TCONS_00049823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049823
Unique NameTCONS_00049823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049823 ID=TCONS_00049823|Name=TCONS_00049823|organism=Clytia hemisphaerica|type=transcript|length=1725bp
GAACTCACTAGCAAGCATCGTATTTTatcAATTCAGAACTTTAAAATTTG
TTTATATTGCCAACTGAAAAGAATCAAATACAATGTCAAATATCAACAAT
GAAGATGAGAGaaCTCAACCAACCATAAATACCAatgatgattttcgaaa
atttggaaaaaagatGGTTGATCTTATTGCAGATTACCATGAAAACGTTC
CAAACATGCCGGTACTACCGGATGTGAAACCCGGATATCTTGCAAAATTA
CTGCCGGATGAGGCGCCAAAGGAACCAGAACCTTGGGAAAGCAtttgtga
agattttaagaaagCCATTGTTCCGGGTATCACGCCCTGGAATTCACCGA
ACTTTCATGCTTACTTCCCAACAGCAAACAGTTATGCAGCTGTAATGGGT
GGGATGTTGGCTGATACAATTGGATGTGTTGGTTTTACGTGGATAGCTTC
TCCCGCTTGCACTGAACTCGAAATGCTAACTATGGATTGGCTTGCAAAGA
TGTTTGATTTGCCTGATGTATTTCAACACGCGGCCGAAGGACATGGTGGT
GGGGTTATTCAAGGATCCGCAAGTGAGTCAACATTGGTTGCAATATTAGC
AGCAAAACATCGCAAGTTGAGTCAATATGGTCACGACGAAGATTTCGGAT
CTAAACTAATAGCGTACACCTCAAAACAATCTCATTCGTCAGTTGAAAAA
GATGTGCGATTAGCTGGAACAAAATTAAGATTACTTGAAACAGATGAGAG
ATTTAGGCTGCGAGGGGATGAGCTGAAAAGAGCAATCGAGGAAGATAAAG
CTAAGGGTTTGATTCCTTTCTTTGTGTGTGCGTCCGCCGGTACAACCAAC
GTTTGCGCGTTTGACGCACTCGATGAGATAAGTGCTGTTTCAGGGGAGGA
AGGACTGTGGATGCATGTTGACGCTGCATATGCAGGAGCGGCGATGATTT
GTCCGGAGTATCGATATCTTATGAAGGGAATTGAAAATACCGATTCTCTT
GTTGTTAGCTGTAATAAGTGGCTGATGGTGAATTTCCCATGTGCGGCCAT
GTTTGTTCGGGATTCACTGGATTTGATTAATCTGTTTGATATCAATCCAC
TGTATTTGAAACATGATTATGAACAGGAAATCCCTGACTTCAGGCACTGG
CAAATCCCTCTTGGACGACGTTTTCGATCTTTAAAACTTTGGATGGTGCT
TAAATCGTATGGAGTCAAAGGTCTTCAAGAAAATATACGACGTCAAATTC
AACAAGCTCAATTATTTGAAGGAATGATACGTGATGATGTAAGGTTTGAA
GTGGTCAATGATGTGTTGATGGGTCTCGTTTGTTTCAGATTAATTGGTGA
TAACACACTAAATGACAAGTTGAATAGGCGAGTCAACGAGGCTCGTAAAA
TACACATGACACCTGCATATGTTAATGATCAGTTTGTTTTACGTTTCGTA
ATAGCGTCTCGATTAACCGAAAATAAGGATGTCAAATTTGCAtgggatga
aataaaaaatcatgcaGATATACTTTCAAAGAATGAACATAATAAGCAAA
GAATCAATGAATGATAATCACAGACGCAAAACAAACTCAAGGAGATGAAA
CTCATGgataaaatataaagttttaaatttattaAACATTAGAAAATCAA
ACCATTTCAAGTACATCCCTGTGTCATAGATttgctgggaccccagcccc
actgaaaaatttggcaaaaattgcg
Run BLAST on NCBI

protein sequence of TCONS_00049823-protein

>TCONS_00049823-protein ID=TCONS_00049823-protein|Name=TCONS_00049823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp
MSNINNEDERTQPTINTNDDFRKFGKKMVDLIADYHENVPNMPVLPDVKP
GYLAKLLPDEAPKEPEPWESICEDFKKAIVPGITPWNSPNFHAYFPTANS
YAAVMGGMLADTIGCVGFTWIASPACTELEMLTMDWLAKMFDLPDVFQHA
AEGHGGGVIQGSASESTLVAILAAKHRKLSQYGHDEDFGSKLIAYTSKQS
HSSVEKDVRLAGTKLRLLETDERFRLRGDELKRAIEEDKAKGLIPFFVCA
SAGTTNVCAFDALDEISAVSGEEGLWMHVDAAYAGAAMICPEYRYLMKGI
ENTDSLVVSCNKWLMVNFPCAAMFVRDSLDLINLFDINPLYLKHDYEQEI
PDFRHWQIPLGRRFRSLKLWMVLKSYGVKGLQENIRRQIQQAQLFEGMIR
DDVRFEVVNDVLMGLVCFRLIGDNTLNDKLNRRVNEARKIHMTPAYVNDQ
FVLRFVIASRLTENKDVKFAWDEIKNHADILSKNEHNKQRINE
Run BLAST on NCBI

transcript from alignment at scaffold_166:620011..628183-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049823 ID=TCONS_00049823|Name=TCONS_00049823|organism=Clytia hemisphaerica|type=transcript|length=8173bp|location=Sequence derived from alignment at scaffold_166:620011..628183- (Clytia hemisphaerica)
GAACTCACTAGCAAGCATCGTATTTTGTAAGTAATTTTTACTATTTTTCT
TTAATCGTGAGGATATATTAAAAGGGAATTAAACTGTTAATTATAAACTC
CGGTTAAGGAGTTTCTTAAAATCAGTGTTTTTTCATTTGTAATTGTGCGT
AAATCAGATTAATCGCGATAGTCGGGTTCGATTTCCTGATCTTTCCGGTT
TGATTTCCCGATTTGGTTTGCGTTTGCGCTTGCGCTCACACCATACAGGG
TGTCCCGAAAAAAAGCATCGAGTCGTACCACTTCCATAGAAAGAAAGTTC
TTGTGTGTTGTTTCACTTTCACTATTCTACCTACTAGGCTCGCACCTGCT
AGGATATACTCTTTTAAATTTATTATGTTAGATATATTAAGAAAGACTGA
CCACGATAAGGATGTTTGCACAATTACCAGAGTTTGCAGCCGTCATTACG
CCTGTTTTATTATCGAATCGCATGGGAGGTTTTTTTGGTAATTTTTTAAC
TAAAAGATATTTCAATAATTTGACTTGCAACAGTATGTCTTAGCATTATT
TTGCGACATTTTTCGAAAATTTTTATGTTACTTTTTGGAATTATATTTGA
ATATGTTTGGGATTCTGTAAATTGTAACACTTCTTGGAAATTTTTGATAC
TACACGTCTCGACGGATTAGCATACTACTTCTTTCTTTTAAGAACAATTT
TGTAAAAACACGAGTCTGAAATTTTTCCGCAACCTAAGAACAAATTAAGA
ACAATCGGAGCCTCAGATTTCAGAAATTACTAAGAAACTACTGGATTTTA
ACAGATTTTAAGTAAAGAAACTAAGCGTATTAAGAACATTTTAAGAACAT
ATAAACCTGGAAATTTCAAAAAATTAAAAACAGCTGATTCAAAATTTACT
GGTTGTTATAAAAAAGCGTCCCAGCCGGCACACAACATTGTTTCAACGTC
CATTTAACGTTATATGGACGTTGTGAACGTTAAACGTTGAAACAACGTTG
TGTGCCAGCTGGATAGTCTTGGCGTAGTAGTCTTGGAAACATACGAGCAC
GTTTTGGGATATTTTCACAACACATGGTAATGCAAATATGTTTATGGATG
ATTTTAAAAATATATTCTTTGCTTTTTTATTTTATTTTATTTTTATTTAT
CTTAAATTATATAATTTTTTCAAGATTAGCAGTTTCTTCATTTAATAGTG
GAGTCTCTATAACTGGAACATGCACAGGGATGACAAAATTGTTCGAAACA
CCTGATTTCTTAGGGAATTGGACAAAAATACTTATATTAAGATGAAAATA
AGTACTAAGTCTTCAAAAATTTTGGATGTTTTAATAAAACATGTGTGTTT
CTTTAATGGAATTCGTTAGTTTTAGTACAAGATCTTCTCACATACTTTTG
TTCTTTGATAAATATCCGTTTGCTTTTACAATGTATACAGGCTTTTTTAT
AAGAATGGTGTTTTCCCATTTCATCATATAAAAATATTCTTAACTTTTTG
GGGAAAACCATCTTATAACATTGTTACTGTAATCTAAGATTAGGTTTAGA
ATCTAACCTAAATTTAACATGTAATACATGGCATTTGATTGCATTTTTGT
AAAGGTATTGAGCCTTGGGGGGGGGTGATTGGCAATTTACAATTATAGGT
GCTCTAAAAATGGCGTTCTTAGGTTTAGTTGCCGAATTTCATGATGGTGA
TATTTTCAACTTAATTTTTTGGCCATTTTCATCATGAATATTTTTATAAA
GTAAATTTTCATAAAAAAAGTGTGTAATCATAATGTGGTAATGATGAACC
AATTTGGTCAATTTTCCTCGTGGACAGTGGTGGTGAGAGAAAACCAGATG
TGATAGTGTGATGAGAGGCTATGCTCGAATCGAGACTCCTGGATGCAAAT
GAAGGTGCTTATTTTCCATCCAGAACGCATGCGCGTGTTTTTTTTTACAC
AAACACTTGATTGAAACTAAAATCTATTGCTAGATTTCAAAAAATGCAGC
CCTCAAAAACAAATGAACCGCTAGATACAATCCGTCGATTTCGGCGCGTT
CTAGGCGCGTTCTGGGTGGAAAATAAATGGCTTCACTTTTTCTTGCCTTG
GAAAGGTTAGAGATTCTACTCTAGCCCTTTGGGATTTAAACTCAATGGGG
TGTCATATGAAGCTCTACCGTATCTATTTGGACTGAAAGATATTTCGAAA
AAAAAATTTTTAAACCCTCTTCATTAAATTTAAGATTGTCTCCCGAAGCC
TCACATCAGTAAAAGAAGTTCTTCTTGTGAGAATGTTTTACATATCAAGG
TTTCCAAGCAGGATTTATAGATCTTTTGATTCAAAGATTTAATTTCGAAT
TTATTTTTTATTTAGATCAATTCAGAACTTTAAAATTTGTTTATATTGCC
AACTGAAAAGAATCAAATACAATGTCAAATATCAACAATGAAGATGAGAG
GTAATTAATTCTAATTGACTTTTTCACTGTTCCTTATCATTTAAAGGGAC
ATTAAACAAGGCTGGTGTACCGTGGTTGATATGGGCAACCCTGTCCCTAT
CTTGATGCTTGCTTGATGAGCGGTCAAAGTTAGGCGGCCGCCCATAATCT
ATTTTTTTAGGCGGTCGCCTATCTCATTGTTTCTGGTCTGTATTTTTATC
GTCTTAACTTAGGCGGCCACCTATCTTAAGTCAGGCGGCCGCCTCTCTTA
AGTCAGGCGGCCGCCTATCTTTGGCTTGAAATTTTTTTAATTCTTGCACG
TTTTCGAAAAAACCAAAACAAACATGGCGTCGACAAGAGATTGATGACAT
TGCAAATCTCAAGGTGGTCAAGGTCTTCAAGTTTGAATAATATTTAACCA
AATCCAAAGTAGATGAATTTTTTGTTCTGCTCACCTCTAATACTGTATCC
ATGGTAAAAATGATATTTATTTAAAATTTTATTGTACAGCAGCCAAAAAG
TTAACCAAGCCAAACCAGTCTAAAAGTCAATAGAGGCGGCCATCTAAGTC
AAAATAGTTGAGTTGAGACGATAATCTGCGAACCAGATATTTCGAAGATA
GGCGGCCGTCTAACTTTGACCGCCCACCTAAGACAGGGACAGGGTTGCCC
ATGTCAGCCACGGTACTTGTGAGAAGTTTCCAGGGACTTACAACCATTAA
AATCTATTGTATGAATATATACAGCTTTTTCTAAAACACCCCTGTATCAA
CGATCCCTTGAAGTTTCTCTGGCTTTAATCTTCCGGAGGGGTTTTAGGAC
ATTATTTTAGCATAGCAACGATTGTAGAACCTTTTATTTACGATTTTGCA
TTATTGTCCATAACCGCCTGATGGTACAAAAGATTTATGAAATTTATCAC
CTAGTATACTTTTGTCAGACTTTTTGTTTGCGATTTCCTTCATATTCTAG
GAAAGTTTCCTGAATGGGCTTTTTATTCCAGAAAAAAAATTGTACCCCCT
ATGTCGAGGAGGTCTATTTTAGAAAAGGTGACCCCCTGGATTTTTACACT
CGAAAAGCCAGACCAACCTGAATTTTTTATTTTTCGTCACACCTCCTCAA
CATAGGAGGTACAGACTATTTCTGAAATACAGTAGTAACCTNAAAAGATA
TTTCGAAAAAAAAATTTTTAAACCCTCTTCATTAAATTTAAGATTGTCTC
CCGAAGCCTCACATCAGTAAAAGAAGTTCTTCTTGTGCGAATGTTTTACC
ATGGTAACATATCAAGGTTTCCAAGCAGGATTTATAGATCTTTTGATTCA
AAGATTTAATTTCGTACTTTTTTTATTTAGATCAATTCAGAACTAAAATT
TGTTTATATTGCCAACTGAAAAGAATCAAATACAATGTCAAATATCAACA
ATGAAGATGAGAGGTAATTAATTCTAATTGAATTTTTCACTGTTCCTTAT
CATTTAAGATAGACTACTAAACAAGGCTGGTGTACCGTGGCTGATATGGG
CAACCCTGTCCCTATCTTGATGCTTGCTTGATGAGCGGTCAAAGTTAGGC
GGCCGCCCATAATCTATATTTTTAGGCGGTCGCCTATCTCATTGTTTCTG
GTCTGTATTTTTATCGTCTTAACTTAGGCGGCCACCTATCATAAGTCAGG
CGGCCGCCTCTCTTAAGTCAGGCGGCCGCCTATCTTTGGCTTGAAATTTT
TTTAATTCTTGCACGTTCTCGAAAAAACCAAAACAAACATGGCGTCGACA
AGAGATTGATGACATTGCAAATCTCAAGGTGGTCAAGGTCTTCAAGTTTG
AATAATATTTAACCAAATCCAAAGTAGATGAATTTTTTGTTCTGCTCACC
TCTAATACTGTATCCATGGTAAAAATGATATTTATTTAAAATTTTATTGT
ACAGCAGCCAAAAAGTTAACCAAGCCAAACCAGTCTAAAAGTCAATAGAG
GCGGCCATCTAAGTCAAAATAGTTGAGTTGAGACGATAATCTGCGAACCA
GATATTTCGAAGATAGGCGGCCGTCTAACTTTGACCGCCCACCTAAGACA
GGGACAGGGTTGCCCATGTCAGCCACGGTACTTGTGAGAAGTTTCCAGGG
ACTTACAACCATTAAAATCTATTGTATGAATATATACAGCTTTTTCTAAA
ACACCCCTGTATCAACGATCCCTTGAAGTTTCTCTGGCTTTAATCTTCCG
GAGGGGTTTTAGGACATTATTTTAGCATAGCAACGATTGTAGAACCTTTT
ATTTACGATTTTGCATTATTGTCCATAACCGCCTGATGGTACAAAAGATT
TATGAAATTTATCACCTAGTATACTTTTGTCAGACTTTTTGTTTGCGATT
TCCTTCATATTCTAGGAAAGTTTCCTGAATGGGCTTTTTATTCCAGAAAA
AAAATTGTACCCCCTATGTCGAGGAGGTCTATTTTAGAAAAGGTGACCCC
CTGGATTTTTACACTCGAAAAGCCAGACCAACCTGAATTTTTTATTTTTC
GTCACACCTCCTCAACATAGGAGGTACAGACTATTTCTGAAATACAGTAG
TAACCTTTGAAAATATAACTTGACCAAAATCGTATGATTTTATTTTAGAA
CTCAACCAACCATAAATACCAATGATGATTTTCGAAAATTTGGAAAAAAG
ATGGTTGATCTNACAAGGCTGGTGTACCGTGGCTGATATGGGCAACCCTG
TCCCTATCTTGATGCTTGCTTGATGAGCGGTCAAAGTTAGGCGGCCGCCC
ATAATCTATATTTTTAGGCGGTCGCCTATCTCATTGTTTCTGGTCTGTAT
TTTTATCGTCTTAACTTAGGCGGCCACCTATCATAAGTCAGGCGGCCGCC
TCTCTTAAGTCAGGCGGCCGCCTATCTTTGGCTTGAAATTTTTTTAATTC
TTGCACGTTCTCGAAAAAACCAAAACAAACATGGCGTCGACAAGAGATTG
ATGACATTGCAAATCTCAAGGTGGTCAAGGTCTTCAAGTTTGAATAATAT
TTAACCAAATCCAAAGTAGATGAATTTTTTGTTCTGCTCACCTCTAATAC
TGTATCCATGGTAAAAATGATATTTATTTAAAATTTTATTGCACAGCAGC
CAAAAAGTTAACCAAGCCAAACCAGTCTAAAAGTCAATAGAGGCGGCCAT
CTAAGTCAAAATAGTTGAGTTGAGACGATAATCTGCGAACCAGATATTTC
GAAGATAGGCGGCCGTCTAACTTTGACCGCCCACCTAAGACAGGGACAGG
GTTGCCCATGTCAGCCACGGTACTTGTGAGAAGTTTCCAGGGACTTACAA
CCATTAAAATCTATTGTATGAATATATACAGCTTTTTCTAAAACACCCCT
GTATCAACGATCCCTTGAAGTTTCTCTGGCTTTAATCTTCCGGAGGGGTT
TTAGGACATTATTTTAGCATAGCAACGATTGTAGAACCTTTTATTTACGA
TTTTGCATTATTGTCCATAACCGCCTGATGGTACAAAAGATTTATGAAAT
TTATCACCTAGTATACTTTTGTCAGACTTTTTGTTTGCGATTTCCTTCAT
ATTCTAGGAAAGTTTCCTGAATGGGCTTTTTATTCCAGAAAAAAAATTGT
ACCCCCTATGTCGAGGAGGTCTATTTTAGAAAAGGTGACCCCCTGGATTT
TTACACTCGAAAAGCCAGACCAACCTGAATTTTTTATTTTTCGTCACACC
TCCTCAACATAGGAGGTACAGACTATTTCTGAAATACAGTAGTAACCTTT
GAAAATATAACTTGACCAAAATCGTATGATTTTATTTTAGAACTCAACCA
ACCATAAATACCAATGATGATTTTCGAAAATTTGGAAAAAAGATGGTTGA
TCTTATTGCAGATTACCATGAAAACGTTCCAAACATGCCGGTACTACCGG
ATGTGAAACCCGGATATCTTGCAAAATTACTGCCGGATGAGGCGCCAAAG
GAACCAGAACCTTGGGAAAGCATTTGTGAAGATTTTAAGAAAGCCATTGT
TCCGGGTATCACGCCCTGGAATTCACCGAACTTTCATGCGTAAGTTGATT
GCTTAAGACTTCCAGATTCGAGAATTTTGATCAATTTCGACCGGGTTAGC
ATAACTCTGGTACAAAAATATTAATTAAAATTTAATATTTTGACAATACA
ATTATTTCGAACTTAGATAAAAAATATGTTAATTAAATAAAAAACAAAAA
AAATTTGCAGCTTTTTCTATGTTTACTTTTTGAGATATTTAGGTTTTCAA
TTTCGACATGGTATTTCTGGACCACCCGGTATATTTCATTTCAACAAATT
ATCAGAGGATTAATATTTAACAGAGTATTTAAAAACAAATATTTCCCTAT
CATTTTAGTTACTTCCCAACAGCAAACAGTTATGCAGCTGTAATGGGTGG
GATGTTGGCTGATACAATTGGATGTGTTGGTTTTACGTGGATAGCTTCTC
CCGCTTGCACTGAACTCGAAATGCTAACTATGGATTGGCTTGCAAAGATG
TTTGATTTGCCTGATGTATTTCAACACGCGGCCGAAGGACATGGTGGTGG
GGTTATTCAAGGATCCGCAAGTGAGTCAACATTGGTTGCAATATTAGCAG
CAAAACATCGCAAGTTGAGTCAATATGGTCACGACGAAGATTTCGGATCT
AAACTAATAGCGTACACCTCAAAACAATCTCATTCGTCAGTTGAAAAAGA
TGTGCGATTAGCTGGAACAAAATTAAGATTACTTGAAACAGATGAGAGAT
TTAGGCTGCGAGGGGATGAGCTGAAAAGAGCAATCGAGGAAGATAAAGCT
AAGGGTTTGATTCCTTTCTTTGTGTGTGCGTCCGCCGGTACAACCAACGT
TTGCGCGTTTGACGCACTCGATGAGATAAGTGCTGTTTCAGGGGAGGAAG
GACTGTGGATGCATGTTGACGCTGCATATGCAGGAGCGGCGATGATTTGT
CCGGAGTATCGATATCTTATGAAGGGAATTGAAAATACCGATTCTCTTGT
TGTTAGCTGTAATAAGTGGCTGATGGTGAATTTCCCATGTGCGGCCATGT
TTGTTCGGGATTCACTGGATTTGATTAATCTGTTTGATATCAATCCACTG
TATTTGAAACATGATTATGAACAGGAAATCCCTGACTTCAGGCACTGGCA
AATCCCTCTTGGACGACGTTTTCGATCTTTAAAACTTTGGATGGTGCTTA
AATCGTATGGAGTCAAAGGTCTTCAAGAAAATATACGACGTCAAATTCAA
CAAGCTCAATTATTTGAAGGAATGATACGTGATGATGTAAGGTTTGAAGT
GGTCAATGATGTGTTGATGGGTCTCGTTTGTTTCAGATTAATTGGTGATA
ACACACTAAATGACAAGTTGAATAGGCGAGTCAACGAGGCTCGTAAAATA
CACATGACACCTGCATATGTTAATGATCAGTTTGTTTTACGTTTCGTAAT
AGCGTCTCGATTAACCGAAAATAAGGATGTCAAATTTGCATGGGATGAAA
TAAAAAATCATGCAGATATACTTTCAAAGAATGAACATAATAAGCAAAGA
ATCAATGAATGATAATCACAGACGCAAAACAAACTCAAGGAGATGAAACT
CATGGATAAAATATAAAGTTTTAAATTTATTAAACATTAGAAAATCAAAC
CATTTCAAGTACATCCCTGTGTCATAGATTTGCTGGGACCCCAGCCCCAC
TGAAAAATTTGGCAAAAATTGCG

Coding sequence (CDS) from alignment at scaffold_166:620011..628183-

>TCONS_00049823 ID=TCONS_00049823|Name=TCONS_00049823|organism=Clytia hemisphaerica|type=CDS|length=4446bp|location=Sequence derived from alignment at scaffold_166:620011..628183- (Clytia hemisphaerica)
TTACTTCCCAACAGCAAACAGTTATGCAGCTGTAATGGGTGGGATGTTGG
CTGATACAATTGGATGTGTTGGTTTTACGTGGATAGCTTCTCCCGCTTGC
ACTGAACTCGAAATGCTAACTATGGATTGGCTTGCAAAGATGTTTGATTT
GCCTGATGTATTTCAACACGCGGCCGAAGGACATGGTGGTGGGGTTATTC
AAGGATCCGCAAGTGAGTCAACATTGGTTGCAATATTAGCAGCAAAACAT
CGCAAGTTGAGTCAATATGGTCACGACGAAGATTTCGGATCTAAACTAAT
AGCGTACACCTCAAAACAATCTCATTCGTCAGTTGAAAAAGATGTGCGAT
TAGCTGGAACAAAATTAAGATTACTTGAAACAGATGAGAGATTTAGGCTG
CGAGGGGATGAGCTGAAAAGAGCAATCGAGGAAGATAAAGCTAAGGGTTT
GATTCCTTTCTTTGTGTGTGCGTCCGCCGGTACAACCAACGTTTGCGCGT
TTGACGCACTCGATGAGATAAGTGCTGTTTCAGGGGAGGAAGGACTGTGG
ATGCATGTTGACGCTGCATATGCAGGAGCGGCGATGATTTGTCCGGAGTA
TCGATATCTTATGAAGGGAATTGAAAATACCGATTCTCTTGTTGTTAGCT
GTAATAAGTGGCTGATGGTGAATTTCCCATGTGCGGCCATGTTTGTTCGG
GATTCACTGGATTTGATTAATCTGTTTGATATCAATCCACTGTATTTGAA
ACATGATTATGAACAGGAAATCCCTGACTTCAGGCACTGGCAAATCCCTC
TTGGACGACGTTTTCGATCTTTAAAACTTTGGATGGTGCTTAAATCGTAT
GGAGTCAAAGGTCTTCAAGAAAATATACGACGTCAAATTCAACAAGCTCA
ATTATTTGAAGGAATGATACGTGATGATGTAAGGTTTGAAGTGGTCAATG
ATGTGTTGATGGGTCTCGTTTGTTTCAGATTAATTGGTGATAACACACTA
AATGACAAGTTGAATAGGCGAGTCAACGAGGCTCGTAAAATACACATGAC
ACCTGCATATGTTAATGATCAGTTTGTTTTACGTTTCGTAATAGCGTCTC
GATTAACCGAAAATAAGGATGTCAAATTTGCATGGGATGAAATAAAAAAT
CATGCAGATATACTTTCAAAGAATGAACATAATAAGCAAAGAATCAATGA
ATGAAACTCAACCAACCATAAATACCAATGATGATTTTCGAAAATTTGGA
AAAAAGATGGTTGATCTTATTGCAGATTACCATGAAAACGTTCCAAACAT
GCCGGTACTACCGGATGTGAAACCCGGATATCTTGCAAAATTACTGCCGG
ATGAGGCGCCAAAGGAACCAGAACCTTGGGAAAGCATTTGTGAAGATTTT
AAGAAAGCCATTGTTCCGGGTATCACGCCCTGGAATTCACCGAACTTTCA
TGCATGTCAAATATCAACAATGAAGATGAGAGTTACTTCCCAACAGCAAA
CAGTTATGCAGCTGTAATGGGTGGGATGTTGGCTGATACAATTGGATGTG
TTGGTTTTACGTGGATAGCTTCTCCCGCTTGCACTGAACTCGAAATGCTA
ACTATGGATTGGCTTGCAAAGATGTTTGATTTGCCTGATGTATTTCAACA
CGCGGCCGAAGGACATGGTGGTGGGGTTATTCAAGGATCCGCAAGTGAGT
CAACATTGGTTGCAATATTAGCAGCAAAACATCGCAAGTTGAGTCAATAT
GGTCACGACGAAGATTTCGGATCTAAACTAATAGCGTACACCTCAAAACA
ATCTCATTCGTCAGTTGAAAAAGATGTGCGATTAGCTGGAACAAAATTAA
GATTACTTGAAACAGATGAGAGATTTAGGCTGCGAGGGGATGAGCTGAAA
AGAGCAATCGAGGAAGATAAAGCTAAGGGTTTGATTCCTTTCTTTGTGTG
TGCGTCCGCCGGTACAACCAACGTTTGCGCGTTTGACGCACTCGATGAGA
TAAGTGCTGTTTCAGGGGAGGAAGGACTGTGGATGCATGTTGACGCTGCA
TATGCAGGAGCGGCGATGATTTGTCCGGAGTATCGATATCTTATGAAGGG
AATTGAAAATACCGATTCTCTTGTTGTTAGCTGTAATAAGTGGCTGATGG
TGAATTTCCCATGTGCGGCCATGTTTGTTCGGGATTCACTGGATTTGATT
AATCTGTTTGATATCAATCCACTGTATTTGAAACATGATTATGAACAGGA
AATCCCTGACTTCAGGCACTGGCAAATCCCTCTTGGACGACGTTTTCGAT
CTTTAAAACTTTGGATGGTGCTTAAATCGTATGGAGTCAAAGGTCTTCAA
GAAAATATACGACGTCAAATTCAACAAGCTCAATTATTTGAAGGAATGAT
ACGTGATGATGTAAGGTTTGAAGTGGTCAATGATGTGTTGATGGGTCTCG
TTTGTTTCAGATTAATTGGTGATAACACACTAAATGACAAGTTGAATAGG
CGAGTCAACGAGGCTCGTAAAATACACATGACACCTGCATATGTTAATGA
TCAGTTTGTTTTACGTTTCGTAATAGCGTCTCGATTAACCGAAAATAAGG
ATGTCAAATTTGCATGGGATGAAATAAAAAATCATGCAGATATACTTTCA
AAGAATGAACATAATAAGCAAAGAATCAATGAATGAAACTCAACCAACCA
TAAATACCAATGATGATTTTCGAAAATTTGGAAAAAAGATGGTTGATCTT
ATTGCAGATTACCATGAAAACGTTCCAAACATGCCGGTACTACCGGATGT
GAAACCCGGATATCTTGCAAAATTACTGCCGGATGAGGCGCCAAAGGAAC
CAGAACCTTGGGAAAGCATTTGTGAAGATTTTAAGAAAGCCATTGTTCCG
GGTATCACGCCCTGGAATTCACCGAACTTTCATGCATGTCAAATATCAAC
AATGAAGATGAGAGTTACTTCCCAACAGCAAACAGTTATGCAGCTGTAAT
GGGTGGGATGTTGGCTGATACAATTGGATGTGTTGGTTTTACGTGGATAG
CTTCTCCCGCTTGCACTGAACTCGAAATGCTAACTATGGATTGGCTTGCA
AAGATGTTTGATTTGCCTGATGTATTTCAACACGCGGCCGAAGGACATGG
TGGTGGGGTTATTCAAGGATCCGCAAGTGAGTCAACATTGGTTGCAATAT
TAGCAGCAAAACATCGCAAGTTGAGTCAATATGGTCACGACGAAGATTTC
GGATCTAAACTAATAGCGTACACCTCAAAACAATCTCATTCGTCAGTTGA
AAAAGATGTGCGATTAGCTGGAACAAAATTAAGATTACTTGAAACAGATG
AGAGATTTAGGCTGCGAGGGGATGAGCTGAAAAGAGCAATCGAGGAAGAT
AAAGCTAAGGGTTTGATTCCTTTCTTTGTGTGTGCGTCCGCCGGTACAAC
CAACGTTTGCGCGTTTGACGCACTCGATGAGATAAGTGCTGTTTCAGGGG
AGGAAGGACTGTGGATGCATGTTGACGCTGCATATGCAGGAGCGGCGATG
ATTTGTCCGGAGTATCGATATCTTATGAAGGGAATTGAAAATACCGATTC
TCTTGTTGTTAGCTGTAATAAGTGGCTGATGGTGAATTTCCCATGTGCGG
CCATGTTTGTTCGGGATTCACTGGATTTGATTAATCTGTTTGATATCAAT
CCACTGTATTTGAAACATGATTATGAACAGGAAATCCCTGACTTCAGGCA
CTGGCAAATCCCTCTTGGACGACGTTTTCGATCTTTAAAACTTTGGATGG
TGCTTAAATCGTATGGAGTCAAAGGTCTTCAAGAAAATATACGACGTCAA
ATTCAACAAGCTCAATTATTTGAAGGAATGATACGTGATGATGTAAGGTT
TGAAGTGGTCAATGATGTGTTGATGGGTCTCGTTTGTTTCAGATTAATTG
GTGATAACACACTAAATGACAAGTTGAATAGGCGAGTCAACGAGGCTCGT
AAAATACACATGACACCTGCATATGTTAATGATCAGTTTGTTTTACGTTT
CGTAATAGCGTCTCGATTAACCGAAAATAAGGATGTCAAATTTGCATGGG
ATGAAATAAAAAATCATGCAGATATACTTTCAAAGAATGAACATAATAAG
CAAAGAATCAATGAATGAAACTCAACCAACCATAAATACCAATGATGATT
TTCGAAAATTTGGAAAAAAGATGGTTGATCTTATTGCAGATTACCATGAA
AACGTTCCAAACATGCCGGTACTACCGGATGTGAAACCCGGATATCTTGC
AAAATTACTGCCGGATGAGGCGCCAAAGGAACCAGAACCTTGGGAAAGCA
TTTGTGAAGATTTTAAGAAAGCCATTGTTCCGGGTATCACGCCCTGGAAT
TCACCGAACTTTCATGCATGTCAAATATCAACAATGAAGATGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031582XLOC_031582Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049823-proteinTCONS_00049823-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049823-exon-scaffold_166-1575043694:628158..628183TCONS_00049823-exon-scaffold_166-1575043694:628158..628183Clytia hemisphaericaexon
TCONS_00049823-exon-scaffold_166-1575043694:625734..625818TCONS_00049823-exon-scaffold_166-1575043694:625734..625818Clytia hemisphaericaexon
TCONS_00049823-exon-scaffold_166-1575043694:621695..621943TCONS_00049823-exon-scaffold_166-1575043694:621695..621943Clytia hemisphaericaexon
TCONS_00049823-exon-scaffold_166-1575043694:620011..621375TCONS_00049823-exon-scaffold_166-1575043694:620011..621375Clytia hemisphaericaexon
TCONS_00049823-exon-scaffold_166-1510915933:628158..628183TCONS_00049823-exon-scaffold_166-1510915933:628158..628183Clytia hemisphaericaexon
TCONS_00049823-exon-scaffold_166-1510915933:625734..625818TCONS_00049823-exon-scaffold_166-1510915933:625734..625818Clytia hemisphaericaexon
TCONS_00049823-exon-scaffold_166-1510915933:621695..621943TCONS_00049823-exon-scaffold_166-1510915933:621695..621943Clytia hemisphaericaexon
TCONS_00049823-exon-scaffold_166-1510915933:620011..621375TCONS_00049823-exon-scaffold_166-1510915933:620011..621375Clytia hemisphaericaexon
TCONS_00049823-exon-scaffold_166-1491911889:628158..628183TCONS_00049823-exon-scaffold_166-1491911889:628158..628183Clytia hemisphaericaexon
TCONS_00049823-exon-scaffold_166-1491911889:625734..625818TCONS_00049823-exon-scaffold_166-1491911889:625734..625818Clytia hemisphaericaexon
TCONS_00049823-exon-scaffold_166-1491911889:621695..621943TCONS_00049823-exon-scaffold_166-1491911889:621695..621943Clytia hemisphaericaexon
TCONS_00049823-exon-scaffold_166-1491911889:620011..621375TCONS_00049823-exon-scaffold_166-1491911889:620011..621375Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:620011..628183 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.930862	0	3.46425	0	2.17087	7.23531	1.89651	1.50023	0.411131	0.882326	0	0	0	0	0	0	0	0	0	0.101708	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010977Aromatic_deC
IPR015421PyrdxlP-dep_Trfase_major_sub1
IPR002129PyrdxlP-dep_de-COase
IPR015422PyrdxlP-dep_Trfase_sub2
IPR021115Pyridoxal-P_BS
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Biological Process
TermDefinition
GO:0006520cellular amino acid metabolic process
GO:0019752carboxylic acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016831carboxy-lyase activity
GO:0003824catalytic activity
GO:0030170pyridoxal phosphate binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019752 carboxylic acid metabolic process
biological_process GO:0006520 cellular amino acid metabolic process
molecular_function GO:0016831 carboxy-lyase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
Blast
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BLAST of TCONS_00049823 vs. Swiss-Prot (Human)
Match: DDC (Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2)

HSP 1 Score: 513.457 bits (1321), Expect = 6.428e-177
Identity = 245/476 (51.47%), Postives = 332/476 (69.75%), Query Frame = 2 
Query:  137 DDFRKFGKKMVDLIADYHENVPNMPVLPDVKPGYLAKLLPDEAPKEPEPWESICEDFKKAIVPGITPWNSPNFHAYFPTANSYAAVMGGMLADTIGCVGFTWIASPACTELEMLTMDWLAKMFDLPDVFQHAAEGHGGGVIQGSASESTLVAILAAK----HR------KLSQYGHDEDFGSKLIAYTSKQSHSSVEKDVRLAGTKLRLLETDERFRLRGDELKRAIEEDKAKGLIPFFVCASAGTTNVCAFDALDEISAVSGEEGLWMHVDAAYAGAAMICPEYRYLMKGIENTDSLVVSCNKWLMVNFPCAAMFVRDSLDLINLFDINPLYLKHDYEQE--IPDFRHWQIPLGRRFRSLKLWMVLKSYGVKGLQENIRRQIQQAQLFEGMIRDDVRFEVVNDVLMGLVCFRLIGDNTLNDKLNRRVNEARKIHMTPAYVNDQFVLRFVIASRLTENKDVKFAWDEIKN-HADIL 1525
             +FR+ GK+MVD +A+Y E +    V PDV+PGYL  L+P  AP+EP+ +E I  D +K I+PG+T W+SP F AYFPTA+SY A++  ML   IGC+GF+W ASPACTELE + MDWL KM +LP  F +   G GGGVIQGSASE+TLVA+LAA+    HR      +L+Q    E    KL+AY+S Q+HSSVE+   + G KL+ + +D  F +R   L+ A+E DKA GLIPFF+ A+ GTT  C+FD L E+  +  +E +W+HVDAAYAG+A ICPE+R+L+ G+E  DS   + +KWL+VNF C+AM+V+   DL   F ++P YLKH ++    I D+RHWQIPLGRRFRSLK+W V + YGVKGLQ  IR+ +Q +  FE ++R D RFE+  +V++GLVCFRL G N +N+ L +R+N A+KIH+ P ++ D+FVLRF I SR  E+  V+ AW+ IK   AD+L
Sbjct:    4 SEFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIME----KLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKELAADVL 475
The following BLAST results are available for this feature:
BLAST of TCONS_00049823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDC6.428e-17751.47Aromatic-L-amino-acid decarboxylase OS=Homo sapien... [more]
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