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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050134 ID=TCONS_00050134|Name=TCONS_00050134|organism=Clytia hemisphaerica|type=transcript|length=2668bp
CTAAAACGTGTACAAAATGCAACATTTTCGATGACACAATAAAGAATCGA
ACTTCAAGAAAGTCTGGTATTCGTGTGAGGAGCTAAGATCTAATTTATGT
GTAAAGGACAAAAAAGTCCATATAAGCCTCACTACTGCTATGCACAGGTT
AAAAAGTAGCAGTATAAATTTAATTATCTATATACTTGataaagaatatt
taaaaataaattaaacttTAGTAAAAAAACTACGgtcaattaatttgaaa
aatatcatgGACTAGAACTATGTATATACATATTATAAATAAATTAACtt
gttaatataatataaaCTTTGTAAATTAACTTTCAGAAAGCTGCATTTAA
AAGTGAAAACATCTATTTTGACCAACATTATTTAGAATAATTATTCAACG
AGAAAAACTAAGATTTGTGACAAGACAGAAAATCATTAGgattagtctac
acaatagacagctccaggcttttaggccttactcttggtatataggcact
gctataggcggtcACTAGTAGCcaccaccgggaattgctttttaataggt
ttaaacataatagacaacttttcataaaagatttttatcaatttcgTTTC
ATTAAatcctcagtgcgcatgcgatttatcagtagaatttcaatattcaa
aacaagagcagtgctcatatcccgaatGTAATTTATAGTGCTCAAGTATG
CCAAATTTTCACTTCTGTATTACAGTTCAATTATCGGTCAAACATTATTT
CTAGGTTTAGTGTTCCCGGGGACCTCGAGTGTTCGATTAAATTTAGAAAA
CCTCGAACTTAAAAAcgattataaataaatattaaacAATTATATGCTAG
TTAAAAACTACTGATTCGATACAgcacttaattttttgaaaacagaaata
ttacattttaaggattttccTGATCTTAAACATCTGATctatcaaaaaga
aatttctacACCATTAAACTTAGTTTCTCAACATTCAGTTGCAAAGATTT
GTTTCGGATCATCTTCGAGTGAAAAGCACAGATACTCTTAATAAACTCCA
ATAAAATATGATAGGGAAGATAACAATGCTACAGTATTTGANaaaaaatt
ttctgttggaaagttgtttgctgcaaacaaaaaattctcgaaattttttg
tcaatataaaaagactttaattctaagggaaAACATTAGTTTTGCACtac
gtgaaaaatgtgtcacagaaataatcattttttagcttttttttgcaaaa
tcagtccgaaaagcaaccaaaaaataggtggtctccatgacaaattgtcc
caaaagcttttactaccagggtagtaaaatacctcttccaagagtctggg
tggtggtatgtaaaaattcgtaaaaatccttttactactcatatatgtct
gagattttactccCGACCCCCCTGGCACAGATAGTCTTAATAACCTCCAA
TAAAATATGATAGGGAAGATAACAATGCTACagtatttgagaaaataccT
TATCAACTTTGTTGCAGTAAGGAAGTTAAAGCTTATAAACCCTTTTTGAA
GTAGAAGaagctgaagaaaaaaaaacaacaaaagaaccACGGTAGCAAAA
ATGGTTTTAACACTGCTGAGATCTCCTCTAGAGGAAAGTTTTTGAGGAAA
TATGGTACTTGATCTTAATAAttaattaaaataataatttaaaaatgatc
aaaacaaaTTATTGGTAGAAGTAGCATTGGTATTAACCAATTGGTATCTA
GGTCGGTTCGGTATGGAGGAGCTACTTCGTGAAACTGGTACCTTAACATC
GTTATTATTCTTCAGTATAGATAGTGCTAATCGGTCTGCTTGCATTTGGT
AATCTGATTTCAGGGTATGGTAACGGTGTTTTTGACCAGACAGTTTCTTC
TCTAAATTCTCAATCAATGTCTCCTTTTTATTTATGGATTGCGGAGGAGG
ATGTTGACGATAAACGGTACGGTTCAAAtaatcatcaaaataaacagCTT
CAGAGTCTCTTTGTCGCACGTTATTTAGAGTAGAATTATTACAGTCGGAT
ACAGGTCTCTGTTTGATAGTGAGACGATCTTTTTTACGAGGGGTTCGAGT
TCTGTAGTGAGATTGATGCAAGGAACCAATAGAAGCGCTCTCATAACCGC
TCATAACGCTCTTCCTATTGCGGACACTTTCAGCGCGTTCTCTCTGTTTC
TGCTTCGATTTTCTGTATCTCTTCAATCGATCTTTAAGGGAGGTTGTGTT
TGTCGATGTAGAGCTATCGTCAGAATCAGGTTCTGTGGATGAACAGCGTA
CAACAACACGTGAAACCGGAGAAAACTGTTTGGAAGGGCTGTCTGGGATA
GTCGATACACCACTCACTGGACGCAATGATAGCAGTGAAAACTCTACACT
AAACGGTCTTGAGGTGGATGATTCGTAGTCACCTGCTGAAGCATAATCAC
TTTCAGGGTCTCTAGTATTTTCAGCAAGCTCAGTTCTGAATTGTGATCGT
TTATTTCTGATTGGCGATGTTGGCTTTCGAAAGGAGCTGAGGATGTATTT
CATTACACGTTGAGTTTCTTCATCCTTAATTATCAATGGAGATTCTTCGT
TTTTGTTTGGGTCGGTACCTCGAACTGGTGAAATCATCAAAGGATCAAGA
ATCTCAGGATCTTGGGAA Run BLAST on NCBI protein sequence of TCONS_00050134-protein >TCONS_00050134-protein ID=TCONS_00050134-protein|Name=TCONS_00050134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
SQDPEILDPLMISPVRGTDPNKNEESPLIIKDEETQRVMKYILSSFRKPT
SPIRNKRSQFRTELAENTRDPESDYASAGDYESSTSRPFSVEFSLLSLRP
VSGVSTIPDSPSKQFSPVSRVVVRCSSTEPDSDDSSTSTNTTSLKDRLKR
YRKSKQKQRERAESVRNRKSVMSGYESASIGSLHQSHYRTRTPRKKDRLT
IKQRPVSDCNNSTLNNVRQRDSEAVYFDDYLNRTVYRQHPPPQSINKKET
LIENLEKKLSGQKHRYHTLKSDYQMQADRLALSILKNNNDVKVPVSRSSS
SIPNRPRYQLVNTNATSTNNLF Run BLAST on NCBI transcript from alignment at scaffold_167:13982..16649 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050134 ID=TCONS_00050134|Name=TCONS_00050134|organism=Clytia hemisphaerica|type=transcript|length=2668bp|location=Sequence derived from alignment at scaffold_167:13982..16649 (Clytia hemisphaerica)
TTCCCAAGATCCTGAGATTCTTGATCCTTTGATGATTTCACCAGTTCGAG
GTACCGACCCAAACAAAAACGAAGAATCTCCATTGATAATTAAGGATGAA
GAAACTCAACGTGTAATGAAATACATCCTCAGCTCCTTTCGAAAGCCAAC
ATCGCCAATCAGAAATAAACGATCACAATTCAGAACTGAGCTTGCTGAAA
ATACTAGAGACCCTGAAAGTGATTATGCTTCAGCAGGTGACTACGAATCA
TCCACCTCAAGACCGTTTAGTGTAGAGTTTTCACTGCTATCATTGCGTCC
AGTGAGTGGTGTATCGACTATCCCAGACAGCCCTTCCAAACAGTTTTCTC
CGGTTTCACGTGTTGTTGTACGCTGTTCATCCACAGAACCTGATTCTGAC
GATAGCTCTACATCGACAAACACAACCTCCCTTAAAGATCGATTGAAGAG
ATACAGAAAATCGAAGCAGAAACAGAGAGAACGCGCTGAAAGTGTCCGCA
ATAGGAAGAGCGTTATGAGCGGTTATGAGAGCGCTTCTATTGGTTCCTTG
CATCAATCTCACTACAGAACTCGAACCCCTCGTAAAAAAGATCGTCTCAC
TATCAAACAGAGACCTGTATCCGACTGTAATAATTCTACTCTAAATAACG
TGCGACAAAGAGACTCTGAAGctgtttattttgatgattaTTTGAACCGT
ACCGTTTATCGTCAACATCCTCCTCCGCAATCCATAAATAAAAAGGAGAC
ATTGATTGAGAATTTAGAGAAGAAACTGTCTGGTCAAAAACACCGTTACC
ATACCCTGAAATCAGATTACCAAATGCAAGCAGACCGATTAGCACTATCT
ATACTGAAGAATAATAACGATGTTAAGGTACCAGTTTCACGAAGTAGCTC
CTCCATACCGAACCGACCTAGATACCAATTGGTTAATACCAATGCTACTT
CTACCAATAAtttgttttgatcatttttaaattattattttaattaaTTA
TTAAGATCAAGTACCATATTTCCTCAAAAACTTTCCTCTAGAGGAGATCT
CAGCAGTGTTAAAACCATTTTTGCTACCGTggttcttttgttgttttttt
ttcttcagcttCTTCTACTTCAAAAAGGGTTTATAAGCTTTAACTTCCTT
ACTGCAACAAAGTTGATAAggtattttctcaaatactGTAGCATTGTTAT
CTTCCCTATCATATTTTATTGGAGGTTATTAAGACTATCTGTGCCAGGGG
GGTCGggagtaaaatctcagacatatatgagtagtaaaaggatttttacg
aatttttacataccaccacccagactcttggaagaggtattttactaccc
tggtagtaaaagcttttgggacaatttgtcatggagaccacctatttttt
ggttgcttttcggactgattttgcaaaaaaaagctaaaaaatgattattt
ctgtgacacatttttcacgtaGTGCAAAACTAATGTTttcccttagaatt
aaagtctttttatattgacaaaaaatttcgagaattttttgtttgcagca
aacaactttccaacagaaaattttttNTCAAATACTGTAGCATTGTTATC
TTCCCTATCATATTTTATTGGAGTTTATTAAGAGTATCTGTGCTTTTCAC
TCGAAGATGATCCGAAACAAATCTTTGCAACTGAATGTTGAGAAACTAAG
TTTAATGGTgtagaaatttctttttgatagATCAGATGTTTAAGATCAgg
aaaatccttaaaatgtaatatttctgttttcaaaaaattaagtgcTGTAT
CGAATCAGTAGTTTTTAACTAGCATATAATTgtttaatatttatttataa
tcgTTTTTAAGTTCGAGGTTTTCTAAATTTAATCGAACACTCGAGGTCCC
CGGGAACACTAAACCTAGAAATAATGTTTGACCGATAATTGAACTGTAAT
ACAGAAGTGAAAATTTGGCATACTTGAGCACTATAAATTACattcgggat
atgagcactgctcttgttttgaatattgaaattctactgataaatcgcat
gcgcactgaggatTTAATGAAAcgaaattgataaaaatcttttatgaaaa
gttgtctattatgtttaaacctattaaaaagcaattcccggtggtgGCTA
CTAGTgaccgcctatagcagtgcctatataccaagagtaaggcctaaaag
cctggagctgtctattgtgtagactaatcCTAATGATTTTCTGTCTTGTC
ACAAATCTTAGTTTTTCTCGTTGAATAATTATTCTAAATAATGTTGGTCA
AAATAGATGTTTTCACTTTTAAATGCAGCTTTCTGAAAGTTAATTTACAA
AGtttatattatattaacaaGTTAATTTATTTATAATATGTATATACATA
GTTCTAGTCcatgatatttttcaaattaattgacCGTAGTTTTTTTACTA
aagtttaatttatttttaaatattctttatCAAGTATATAGATAATTAAA
TTTATACTGCTACTTTTTAACCTGTGCATAGCAGTAGTGAGGCTTATATG
GACTTTTTTGTCCTTTACACATAAATTAGATCTTAGCTCCTCACACGAAT
ACCAGACTTTCTTGAAGTTCGATTCTTTATTGTGTCATCGAAAATGTTGC
ATTTTGTACACGTTTTAG Coding sequence (CDS) from alignment at scaffold_167:13982..16649 >TCONS_00050134 ID=TCONS_00050134|Name=TCONS_00050134|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_167:13982..16649 (Clytia hemisphaerica)
TCCCAAGATCCTGAGATTCTTGATCCTTTGATGATTTCACCAGTTCGAGG
TACCGACCCAAACAAAAACGAAGAATCTCCATTGATAATTAAGGATGAAG
AAACTCAACGTGTAATGAAATACATCCTCAGCTCCTTTCGAAAGCCAACA
TCGCCAATCAGAAATAAACGATCACAATTCAGAACTGAGCTTGCTGAAAA
TACTAGAGACCCTGAAAGTGATTATGCTTCAGCAGGTGACTACGAATCAT
CCACCTCAAGACCGTTTAGTGTAGAGTTTTCACTGCTATCATTGCGTCCA
GTGAGTGGTGTATCGACTATCCCAGACAGCCCTTCCAAACAGTTTTCTCC
GGTTTCACGTGTTGTTGTACGCTGTTCATCCACAGAACCTGATTCTGACG
ATAGCTCTACATCGACAAACACAACCTCCCTTAAAGATCGATTGAAGAGA
TACAGAAAATCGAAGCAGAAACAGAGAGAACGCGCTGAAAGTGTCCGCAA
TAGGAAGAGCGTTATGAGCGGTTATGAGAGCGCTTCTATTGGTTCCTTGC
ATCAATCTCACTACAGAACTCGAACCCCTCGTAAAAAAGATCGTCTCACT
ATCAAACAGAGACCTGTATCCGACTGTAATAATTCTACTCTAAATAACGT
GCGACAAAGAGACTCTGAAGctgtttattttgatgattaTTTGAACCGTA
CCGTTTATCGTCAACATCCTCCTCCGCAATCCATAAATAAAAAGGAGACA
TTGATTGAGAATTTAGAGAAGAAACTGTCTGGTCAAAAACACCGTTACCA
TACCCTGAAATCAGATTACCAAATGCAAGCAGACCGATTAGCACTATCTA
TACTGAAGAATAATAACGATGTTAAGGTACCAGTTTCACGAAGTAGCTCC
TCCATACCGAACCGACCTAGATACCAATTGGTTAATACCAATGCTACTTC
TACCAATAAtttgttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050134-exon-scaffold_167-1491911889:13982..16649 | TCONS_00050134-exon-scaffold_167-1491911889:13982..16649 | Clytia hemisphaerica | exon |
| TCONS_00050134-exon-scaffold_167-1510915933:13982..16649 | TCONS_00050134-exon-scaffold_167-1510915933:13982..16649 | Clytia hemisphaerica | exon |
| TCONS_00050134-exon-scaffold_167-1575043694:13982..16649 | TCONS_00050134-exon-scaffold_167-1575043694:13982..16649 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:13982..16649 . |
Blast
The following BLAST results are available for this feature:
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