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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049862 ID=TCONS_00049862|Name=TCONS_00049862|organism=Clytia hemisphaerica|type=transcript|length=942bp
ATGGTTGGGGTTGAGAAAGTcaacaaacaaaaaatctttgaaaaagttat
tttgatttttacttttcttgagtTGATATGGTTACAGCAAGACTTTGCGA
TGCTATAAAATGTCACTTTCACAGTTTGATTTACTTTGTAGCTCTTTGAT
GTTCGAGATGTAGCTGATGAATTCAAAGATCAGAAATGTCTGATCCTTTG
CGCTGGTATACTAAAAGAGAAACTATTGACGCAAAATCCTGTCCCTAATG
CTAACGTTCGTCTAAAGAATTTGTTGCTGTATTTACAAAAGAACCATCAT
ATATTCTTTGTTGGATCAAGcgTTTTGGACGACTATTACATTCTGTATAC
CATTCTGTACCACAATTTCGACATTGGGTTTGTATCACGTGACTTACTTC
GTGACCATCTGTATCACCTGGATTCCACGAGTCGTGTCGACTTCCAACGC
TGGCAAGCTGCCAATCAATATATTTTGCAATCTTTCACTGATGATAATAA
ACCTGTGTTTTCTGGGAGACTGGAAACAAAAATCAGTGTGCAAAGTTCGC
CCACTGGTTGGCATATACCAAAATCCACATCAAATTGGATCTGTGTTCAA
GAGGAATAGAAGAGGTTTGAATCAGTGGCTCCGCTTGGTTTGTTATATTT
GGACAAAATTACTTTTCGTTTTTGAATCTAAAATAGCTGTTTATTTTGCA
TTGAGGATTTAGTTGCTTTTTACAAAGGTTTTTTCTTGACCCTTCGTGCA
TTACCCATCTATAAGAGCAACTCGGAGCAAATATTAAGTGCTATTCGGCG
TAACATGCTTTTAAAAGCAGGAAATATTTCATTGATAActataataataa
caaaaagTGTATAGAAGAGTGTTTAGTGTTATTCTTCTAAAAAATATGGT
CGGATTCGACTGAAACTTAGCACACTTGTTCTTTTGGTAAAT Run BLAST on NCBI transcript from alignment at scaffold_167:20367..24946+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049862 ID=TCONS_00049862|Name=TCONS_00049862|organism=Clytia hemisphaerica|type=transcript|length=4580bp|location=Sequence derived from alignment at scaffold_167:20367..24946+ (Clytia hemisphaerica)
ATGGTTGGGGTTGAGAAAGTcaacaaacaaaaaatctttgaaaaagttat
tttgatttttacttttcttgagtTGATATGGTTACAGCAAGACTTTGCGA
TGCTATAAAATGTCACTTTCACAGTTTGATTTACTTTGTAGCTCTTTGAT
GTAAGTATCTACTTAGAGAGTTCTGAGAGTTTTTTTGCTTTTGGATAACA
TGCAACGAAGGGACTTCAACGGGATAAATCCGTTGTACAAtcgtctcgag
gtgggatacgggatatacagtgATCATTTAAAACCGTATTGATGACGAGG
CTTCGTATCCTACCTCGAGTAATAAAGTAAGACgtttaatacacctttcc
cgagatGTTGTCGACTTTTTTGTTACAATGTTTTAAGTGCTTCGTTttgg
taaaataaaaatctgtaaaaaatacaaaacaaataaaaaaaggattgtCT
AAAAAGCTAGTCTGTTatcagcttttctcgagattggttcattagttttt
tctgatttttggcacaaagggtGCAAAATAgtgatgcccaaaatgtgacg
gagcccgattttcgaaaaaaaaattttccggccgaaaatctCGGAAATAT
AAAACCtgctttttggcattttctcgagatttcatcactagttttttccg
atttttcgcACAAagagcaatgcccaaaacatggctgagtccgatttttg
agaaaattttttttccggtcgaaaatgccggagatatgccggaaaaaccg
tttttcggcattttattgagattttatcattagttttttctgactttttg
cgcaaagatgcgtattagcaatgcccaaaacacgATCAGAGTCCgaattt
tgagaacatttttttccgggccgaaaatgccggaaatcgccgttttagca
gattttcattggactttttcctcatattcctttgttttttcactcaaaag
catttttgataacaatgcccaccattaaGCATGATTCGATTGttgataaa
actgatttttgcaaccggaactttcttaTTCTATTTTCCCTACCCTATTT
TCTCTCtactctccccccatcaacaatcaatgattaaatttaatgtgtta
tgcatttttTGCTAAACTATATATCTTCTAACTGATTGTTTCATTTATTT
CCTTATTGCTATCTTACTTTCACTATCAGGTAGGTCTATTTAGCATCTAC
AATCAGTttcaaaatacttggcacaaaagggaaattccccacgaaatttt
ataaccacaaacaatttggaaacgctctaaattaggttggaagggtaaaa
gttcaaaaatggtccagtaggcttgaaatatagcctagaaaccataAATC
CCCCCATGTcaaaatattcgatgaaatcaagttgaatgcccgaaattgac
attctcgctggaacttcaattttcgaaaaatggtaaaatagccaaaattg
ccaatatgttatggcactgattgtagcttGTTATGAGACATTTGACCATG
AATAAACATAGCCATATACAGTAATAGAAAAGAgcttttgagctcaaatt
ttcaggaTTGATTCGTCTCTATAATACAATTATAAATATAGAAATGTTGA
TGTGATCGGAAATTTCGTAATGAGGAGGGGGtaagtttcaaaagtttcac
cttCCTTCCGATGAAAATTATGAGTGTAAGACAAGGAACCTCTGTCTCGA
TGAAGTATATAAAGAGGCTTCTCCGTctcaaaatgggcttttccagaaaa
aaaccgtgcaccccctgttgaggaggtccaaccttttgtgacctactccc
ttggaattccaggcaattttaggatcatacccctctggaattccgaattt
ttacaaattttcaatcattacccccttggaattccgcttatttttgaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNccttatggaattccactgcatttcaaac
cttacccccttggaacagaaatggacctcctcaacagggggtgcacgatt
tttttctggaaaagcccaattctgcataattcaccatGATTTCAAGAACA
TGTGCTAATTTGccgtgtaaaatccatttttcgTCTCAGGCGGTAAACCT
TGCTTTGATCATAAATTTTGGTTTAACAATTTTAGGTTCGAGATGTAGCT
GATGAATTCAAAGATCAGAAATGTCTGATCCTTTGCGCTGGTATACTAAA
AGAGAAACTATTGACGCAAAATCCTGTCCCTAATGCTAACGTTCGTCTAA
AGAATTTGTTGCTGTATTTACAAAAGAACCATCATATATTCTTTGTTGGA
TCAAGGTAAGATGTTTTCTAAGactgaagattttttttttcagttctcAT
TCTATTTTTCCTATTTATAGGGATCTGGTTTCTGAAATTATTTTAAGGCT
ACATTggaccatgaaggtaataaagatagatggagagtcaatgccttttg
ttctattctgatttatcatcggaagcaaacagctgtttggttgctttggg
aataacatgattaattttgggtatactcgtgggaatatttaagatggatg
aaaagacattacatttttaacattgtatattgaaatataatagccttgtc
atgaaaaattgaaaaaaaacttcacataataagcacaatactctaaACTT
CTatgggaagctgcccataaagccatcgatagattttaaaaagaattacg
tgttacgattaggaaccttgtatcgatcattttgtcagagtatgaaaacc
gctgcccacttagacgtgaagattttaagataagaaactttcaatgataa
tgtgatgcgactctcaatgttcacaaaatgccagcccaaaaataNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcaca
aaatgccagcccaaaaatatatccttatgaaattaatatattcttttatc
cttaaatcagttgaaactatttcgaatcgcattttaactaagatttctca
gaaaattaagtttttcaaaatcaacggatcagcctctttctgttcttata
aagttataaattgatgttttttgcttccaatgatggtacatcaaagaaaa
gccgctttgaatagatttatgaaagatttcaacgaccgtttaggtcatta
ccgagacgttttctctccatctgtatCTTTATTCCTTCATGATTGGACGA
TAACTTGAGGATATTGAGAAATGTGATTGCTTGTCAATTatcattttttc
atgtttttctttatatttttttcagcgTTTTGGACGACTATTACATTCTG
TATACCATTCTGTACCACAATTTCGACATTGGGTTTGTATCACGTGACTT
ACTTCGTGACCATCTGTATCACCTGGATTCCACGAGTCGTGTCGACTTCC
AACGCTGGCAAGCTGCCAATCAATATATTTTGCAATCTTTCACTGATGAT
AATAAACCTGTGTTTTCTGTAAGGACCCTTCTTTTTCCTTTTACCTATGA
GATCTTATATCGTCGACATCCGGAATTAATTTTGACATACTATTTAACCT
TTATACATATAAGGAGCGCTTAGGATTTAAATTTGGGAACTTTTCGGATT
TTTGAGGTGTGGCACCTGGACTAGGTAAAGAATGTACTTGTTCTGTGAGA
GCGTAGAAAGAATACACCTTTTAGACCGTAGTCGcgtggtcaggcgcgtg
ccacttcaTTATTTAATTtgccaccctaAACTCGATCCAATTCTTTTTTA
CACTtcttctattgtctttaggtgcgaaaaaagactgggacggttttagg
gtggtaaaacggacaaaaaatgcccgcgcggtaattggcGGCTAAGGTCG
GAAAGGTGTATTCAGATAGGATCATCATCCATACCACCATAGCCTTTTTC
GCAAGACTTGACATGAAGTTTgatctctttctttctttctcttccttttc
attgaaaattgtatGAGCTTGTTgaactttttttgaaacttttctttaTA
GGGGAGACTGGAAACAAAAATCAGTGTGCAAAGTTCGCCCACTGGTTGGC
ATATACCAAAATCCACATCAAATTGGATCTGTGTTCAAGAGGAATAGAAG
AGGTTTGAATCAGTGGCTCCGCTTGGTTTGTTATATTTGGACAAAATTAC
TTTTCGTTTTTGAATCTAAAATAGCTGTTTATTTTGCATTGAGGATTTAG
TTGCTTTTTACAAAGGTTTTTTCTTGACCCTTCGTGCATTACCCATCTAT
AAGAGCAACTCGGAGCAAATATTAAGTGCTATTCGGCGTAACATGCTTTT
AAAAGCAGGAAATATTTCATTGATAActataataataacaaaaagTGTAT
AGAAGAGTGTTTAGTGTTATTCTTCTAAAAAATATGGTCGGATTCGACTG
AAACTTAGCACACTTGTTCTTTTGGTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049862-exon-scaffold_167-1491911889:20367..20516 | TCONS_00049862-exon-scaffold_167-1491911889:20367..20516 | Clytia hemisphaerica | exon |
| TCONS_00049862-exon-scaffold_167-1510915933:20367..20516 | TCONS_00049862-exon-scaffold_167-1510915933:20367..20516 | Clytia hemisphaerica | exon |
| TCONS_00049862-exon-scaffold_167-1575043694:20367..20516 | TCONS_00049862-exon-scaffold_167-1575043694:20367..20516 | Clytia hemisphaerica | exon |
| TCONS_00049862-exon-scaffold_167-1491911889:22602..22771 | TCONS_00049862-exon-scaffold_167-1491911889:22602..22771 | Clytia hemisphaerica | exon |
| TCONS_00049862-exon-scaffold_167-1510915933:22602..22771 | TCONS_00049862-exon-scaffold_167-1510915933:22602..22771 | Clytia hemisphaerica | exon |
| TCONS_00049862-exon-scaffold_167-1575043694:22602..22771 | TCONS_00049862-exon-scaffold_167-1575043694:22602..22771 | Clytia hemisphaerica | exon |
| TCONS_00049862-exon-scaffold_167-1491911889:23792..23984 | TCONS_00049862-exon-scaffold_167-1491911889:23792..23984 | Clytia hemisphaerica | exon |
| TCONS_00049862-exon-scaffold_167-1510915933:23792..23984 | TCONS_00049862-exon-scaffold_167-1510915933:23792..23984 | Clytia hemisphaerica | exon |
| TCONS_00049862-exon-scaffold_167-1575043694:23792..23984 | TCONS_00049862-exon-scaffold_167-1575043694:23792..23984 | Clytia hemisphaerica | exon |
| TCONS_00049862-exon-scaffold_167-1491911889:24518..24946 | TCONS_00049862-exon-scaffold_167-1491911889:24518..24946 | Clytia hemisphaerica | exon |
| TCONS_00049862-exon-scaffold_167-1510915933:24518..24946 | TCONS_00049862-exon-scaffold_167-1510915933:24518..24946 | Clytia hemisphaerica | exon |
| TCONS_00049862-exon-scaffold_167-1575043694:24518..24946 | TCONS_00049862-exon-scaffold_167-1575043694:24518..24946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:20367..24946 + |
Blast
The following BLAST results are available for this feature:
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