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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050140 ID=TCONS_00050140|Name=TCONS_00050140|organism=Clytia hemisphaerica|type=transcript|length=1226bp
attacaaaacattacttaaacataaaatatagtatatatatagtaatatT
TGGCTTACCCAAAACCAGAACGAAGCATTGAATGGTATCCTTTGGTCCAA
ATGTTCTAAAACTAAATTTGTTGGTCGTAAGCGCGTTCTTCTTGCGGTAT
GCGACACAATTAATCAATTTAACTCAGGGGCAGGAAACAAGGTTGTCTAA
TTCATCTAATTCATTGTATGGATTCCAAAAGGAAGATGCCACGAGAGTCA
GTACAGCTGAACGCAAAGTCTCGATTAAGTCAAGAATGGCAAGACAAGAT
TCGGgccaaaaagaaatcaaagggGGGATCATCCAAAACCACCTATTTCC
CAGGAGCATTTGGAACCTCAGCAGAACCAGAAATTAACATTGATGgtgaa
aagcaaccaaaaaaagCCAAGGTgaagcaaaaaaacataaaacgcAAAGC
CGTCAAGCCGAAAGAGCAACCTGTACTCATCAATAGCGCGCAAAAGCCAA
AAAGCCGAAAAAGGACTCCAAATCGGATGATGATGACCTACCTTTGATTA
GCCTCTTGGAAGTTAAAATTACATTTGTCAGTGATGAAACTGTTACAATA
ATAACTTCTAAGCATTAGGAACATGTATTGTtgtgtttttcataaaaatt
tgttaGATTTTTGGTTTTACACAAAATATCTGTACTTTCTAACTGTTGCG
GTACTTTCTGGGCGGGCCTACCGAATGAtatattttggtcaaaattttgg
gtTTGGAGGATTTTGGCACTTTTTCCATCAGAATTTCTGAAAAGTAGCTT
TGAAATGATtgaattgtgcaaaaaattccaTTTGAAAAGCTTTTCATCCC
TTTTTTCTACGGTTATCTAACTTTTAGAGCCCGTTTACGCAAAACATGAA
ATCCGGGGGTTCGCAATCTCTTGGCGGAAATATCTCAGGATTGGCTGTTc
cgattgacttgaaattttcagcacaGGTTTCTCTCATGGTAAGGTGTGAT
CTGAATGAAACAGAATCAACAAAAAATGTTCAGTTGATTTTATaattaac
aagcaacatgctgaatggacctacctaatgattaacatcagatgaaaata
agaaaaaagtgacaataattgtaaaaaaattcagaatggaaaaataaagc
ttgtgtgttgaataatgtaaaatggtaaaaaggaatttccccaaatacga
aaatcacttaaaccattcaggcccaa Run BLAST on NCBI protein sequence of TCONS_00050140-protein >TCONS_00050140-protein ID=TCONS_00050140-protein|Name=TCONS_00050140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MDSKRKMPRESVQLNAKSRLSQEWQDKIRAKKKSKGGSSKTTYFPGAFGT
SAEPEINIDGEKQPKKAKVKQKNIKRKAVKPKEQPVLINSAQKPKSRKRT
PNRMMMTYL Run BLAST on NCBI transcript from alignment at scaffold_167:45056..46281 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050140 ID=TCONS_00050140|Name=TCONS_00050140|organism=Clytia hemisphaerica|type=transcript|length=1226bp|location=Sequence derived from alignment at scaffold_167:45056..46281 (Clytia hemisphaerica)
ttgggcctgaatggtttaagtgattttcgtatttggggaaattccttttt
accattttacattattcaacacacaagctttatttttccattctgaattt
ttttacaattattgtcacttttttcttattttcatctgatgttaatcatt
aggtaggtccattcagcatgttgcttgttaattATAAAATCAACTGAACA
TTTTTTGTTGATTCTGTTTCATTCAGATCACACCTTACCATGAGAGAAAC
CtgtgctgaaaatttcaagtcaatcggAACAGCCAATCCTGAGATATTTC
CGCCAAGAGATTGCGAACCCCCGGATTTCATGTTTTGCGTAAACGGGCTC
TAAAAGTTAGATAACCGTAGAAAAAAGGGATGAAAAGCTTTTCAAAtgga
attttttgcacaattcaATCATTTCAAAGCTACTTTTCAGAAATTCTGAT
GGAAAAAGTGCCAAAATCCTCCAAacccaaaattttgaccaaaatataTC
ATTCGGTAGGCCCGCCCAGAAAGTACCGCAACAGTTAGAAAGTACAGATA
TTTTGTGTAAAACCAAAAATCtaacaaatttttatgaaaaacacaACAAT
ACATGTTCCTAATGCTTAGAAGTTATTATTGTAACAGTTTCATCACTGAC
AAATGTAATTTTAACTTCCAAGAGGCTAATCAAAGGTAGGTCATCATCAT
CCGATTTGGAGTCCTTTTTCGGCTTTTTGGCTTTTGCGCGCTATTGATGA
GTACAGGTTGCTCTTTCGGCTTGACGGCTTTgcgttttatgtttttttgc
ttcACCTTGGctttttttggttgcttttcacCATCAATGTTAATTTCTGG
TTCTGCTGAGGTTCCAAATGCTCCTGGGAAATAGGTGGTTTTGGATGATC
CCccctttgatttctttttggcCCGAATCTTGTCTTGCCATTCTTGACTT
AATCGAGACTTTGCGTTCAGCTGTACTGACTCTCGTGGCATCTTCCTTTT
GGAATCCATACAATGAATTAGATGAATTAGACAACCTTGTTTCCTGCCCC
TGAGTTAAATTGATTAATTGTGTCGCATACCGCAAGAAGAACGCGCTTAC
GACCAACAAATTTAGTTTTAGAACATTTGGACCAAAGGATACCATTCAAT
GCTTCGTTCTGGTTTTGGGTAAGCCAAatattactatatatatactatat
tttatgtttaagtaatgttttgtaat Coding sequence (CDS) from alignment at scaffold_167:45056..46281 >TCONS_00050140 ID=TCONS_00050140|Name=TCONS_00050140|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_167:45056..46281 (Clytia hemisphaerica)
TCAAAGGTAGGTCATCATCATCCGATTTGGAGTCCTTTTTCGGCTTTTTG
GCTTTTGCGCGCTATTGATGAGTACAGGTTGCTCTTTCGGCTTGACGGCT
TTgcgttttatgtttttttgcttcACCTTGGctttttttggttgcttttc
acCATCAATGTTAATTTCTGGTTCTGCTGAGGTTCCAAATGCTCCTGGGA
AATAGGTGGTTTTGGATGATCCCccctttgatttctttttggcCCGAATC
TTGTCTTGCCATTCTTGACTTAATCGAGACTTTGCGTTCAGCTGTACTGA
CTCTCGTGGCATCTTCCTTTTGGAATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050140-exon-scaffold_167-1491911889:45056..46281 | TCONS_00050140-exon-scaffold_167-1491911889:45056..46281 | Clytia hemisphaerica | exon |
| TCONS_00050140-exon-scaffold_167-1510915933:45056..46281 | TCONS_00050140-exon-scaffold_167-1510915933:45056..46281 | Clytia hemisphaerica | exon |
| TCONS_00050140-exon-scaffold_167-1575043694:45056..46281 | TCONS_00050140-exon-scaffold_167-1575043694:45056..46281 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:45056..46281 . |
Blast
The following BLAST results are available for this feature:
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