|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050142 ID=TCONS_00050142|Name=TCONS_00050142|organism=Clytia hemisphaerica|type=transcript|length=2756bp
AGCAAATATTCATGAATTTTTAAACTCTACAAGATTTATAAACATCTAAA
CTTTATACAAAACTAATACATTATATAGAGACAGACTGGTATAAAATTAT
TCTACATCATAATAAGATTAGTAAACAGCTCAATCTAGGATATCGTTAAA
ATAGGGTAATATATATATGAAAATAATATCAATATCGTTTAAAATCTCTT
ACAGTATAGTAAAAATCACAGTTGAATGTTAAAGTTATACCCGGGTGACA
CAAAAGAACATTTGACGCCCAAAGTTACATAGTCTTACTTTAAATTTGAC
ATAtgactttttaagtttgaggTACTGccaatttcaataaaaactggTCA
TATTATGAGCTGTACATGGCttttaaaattattatcaaCAATCATTTATG
CCATAAAACGAGTCAAtccaaaaacaattttcaaatcaattacATGAAGT
TAATACCTTTATTTTACATGACTTCTACCCTTTTTTAAATatgaatttta
acttcaaaagcttataaatATGGCAAATACGAGACAGTTCTAGAAAGTTA
TTCCTCATAATTTTCAAGTAGACAATCCTCAGTTCATAAAAACTTGATTT
TGAGCTTAACCAACACTTTATTTGGTCTCAGCAGGGAtccatcaaaagtt
ttttttagccACCCTGGCAGTATGATTGAATGATTAGCTTACACGTGATA
GCTTTCGCAAAAGTCTGTAGGGCGTACAAGATCTctcaatttttgcaaaa
gttGAGGAAGGTTCATGTTTTTCAGAATCTTAGAAACTTAAATGTTATGC
ATGTTGAAATTTAAGCAAGTTTAAGATTTTGATACTTAATCTCTATTCCA
CTTTCCTAATTTCCCACGCTCGAAAAATCcgatctgtttttttttcgtac
GAAAACTTTCAATTTAACGTCACGGTTTCACAAACGAGCAAAGTTAAGAG
CTAACTTTTACGAACGGggcttttgaattttaaaataattcgaaaggATT
AACTCTCACGACTCGTCCATTTTCCCCCCAgcttttcaccaaattttgtg
AAGCAGAGGAAAAAAAACCGAATAATTTTATAATATTCAAGGCTGAGGAG
TGAAGGTTAAGAAATTTCGTAGGTTTAAGAAAGATCCTTATTTGAGTGAT
TATTGTGCTGTTAACAGCTGTTAAAGATGTTTCTCTTTTACAGTATTTGT
ATAATAGACATTCACTAGCGACCTACCCTCCGTCCTCCTTGTTTGATGTT
TGTTTTaatttatatagttttttcagAAATCATCAGACTGTTGATAGAAT
ccgataaaataaacaaaagttcATCCCTAGTAAAGAATgatcagaaaata
aaaatctgtaAAAGTTTCATGAGAAAACTTATCATAGAAAAATAGTTATC
TAGAtctaaagtaataaaaaataaaattgaagctATGCAGAGCATGTGCT
TcaaatcttaaaatttattGGTCTAAAAGATGAATTATAGCCTCATAAGT
CAAAAAGGTCACTGCAGTGTGAGGTAATTGGCGTAATAAACTAGTGCCAA
ATCCACCATAAAGTCCAGCTCTTCCTTCCTCTCTAGCTACCAGCTTCAAA
CTctggaaaaagtttttatatttCAATCCTCCATTTACATCCAATACATC
TTGCCTTAGCCTAGTCCTTATAACTTCATGGGGATACATTATGGTTGTgg
caaatatttttgaaactgTAGCTGCATAAGTGAAATGTAGGGCTTGAAAC
TTCAACTTTTGTCCATCCATTTTCTTTGAAGAAATCATTCTTTTGAGCTC
TTCATATAAAAGAAAGTAAATCACAGTTTCCAAGACACCCACATAAGATG
CTGTAATTCCTCGAAAGAAACATTTCATTCCATGTTTTCGATAACCCCGC
ACAATGATTTGTCGGACTGTTTTATTTTTACCACTCAATTGCAACTTTGT
CTTAATGTACCATACTGGATTTGTAACTGTACCAGTGAAAATACCTGCAG
ACATTGCAGAGAGTGAATGGACAACATGTTGATGAGATTGTAAAGTTGAA
TTTTGATACAACTTGTGCTTGGCAGTAGCATAGCAAAAGAAGTATGCTGA
TTTTGCTGGAACGATTCCTATCAACCCTGGTGTCAGGCCTTTGTACATGG
ATCTAATTCCTTCATTCTGAACCATATGTCTCATGTATGAAAAAAGCACT
TGGAAATATCCAAAGAATGGCTTTCTCTGTACTTGAATGGCAGGTCCCCC
AGCAATAGCAGGAGCTGTTAAGTTTGCACTTGCACCAACATAACTAAAAT
TTAGTTTTGTTGACATTAACCGTGTTTGTACAACATCCAGAGGACAAGTA
ACACATTGGGCAACAGTAGATCCTATCCCACCTGCTAGAAGATGAACAAA
TGGCCCGAGATTGGGTCGATTGGAAGATGAACTAGCAACTTCTTTTGTTG
ATCTGCTTGGGTCCTGGTGCTGCTGCGACATTTAAAATGTCCAATGTCTG
GATCTCTAGAATCTTTTACTCTGTCTTGTATACTGATCTAGATGCATCTG
GTtataatttcaaagaaacaaaaagaaaaaaaaaatattgtgcTCCTCTT
TATTGTCTTGTTTGTGTGCAGAAGATCTTTGTAGTTTGTACTTTTCAGAC
gtctttttgtgttttttttcaacaaaaactatgttttgaaaaaaaactca
agAATATATTTAAGTCGGGTCCATGTTTAACATGTTTGATATTCCGCGCG
TTTTCA Run BLAST on NCBI protein sequence of TCONS_00050142-protein >TCONS_00050142-protein ID=TCONS_00050142-protein|Name=TCONS_00050142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MSQQHQDPSRSTKEVASSSSNRPNLGPFVHLLAGGIGSTVAQCVTCPLDV
VQTRLMSTKLNFSYVGASANLTAPAIAGGPAIQVQRKPFFGYFQVLFSYM
RHMVQNEGIRSMYKGLTPGLIGIVPAKSAYFFCYATAKHKLYQNSTLQSH
QHVVHSLSAMSAGIFTGTVTNPVWYIKTKLQLSGKNKTVRQIIVRGYRKH
GMKCFFRGITASYVGVLETVIYFLLYEELKRMISSKKMDGQKLKFQALHF
TYAATVSKIFATTIMYPHEVIRTRLRQDVLDVNGGLKYKNFFQSLKLVAR
EEGRAGLYGGFGTSLLRQLPHTAVTFLTYEAIIHLLDQ Run BLAST on NCBI transcript from alignment at scaffold_167:71123..73878 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050142 ID=TCONS_00050142|Name=TCONS_00050142|organism=Clytia hemisphaerica|type=transcript|length=2756bp|location=Sequence derived from alignment at scaffold_167:71123..73878 (Clytia hemisphaerica)
TGAAAACGCGCGGAATATCAAACATGTTAAACATGGACCCGACTTAAATA
TATTcttgagttttttttcaaaacatagtttttgttgaaaaaaaacacaa
aaagacGTCTGAAAAGTACAAACTACAAAGATCTTCTGCACACAAACAAG
ACAATAAAGAGGAgcacaatattttttttttctttttgtttctttgaaat
tataACCAGATGCATCTAGATCAGTATACAAGACAGAGTAAAAGATTCTA
GAGATCCAGACATTGGACATTTTAAATGTCGCAGCAGCACCAGGACCCAA
GCAGATCAACAAAAGAAGTTGCTAGTTCATCTTCCAATCGACCCAATCTC
GGGCCATTTGTTCATCTTCTAGCAGGTGGGATAGGATCTACTGTTGCCCA
ATGTGTTACTTGTCCTCTGGATGTTGTACAAACACGGTTAATGTCAACAA
AACTAAATTTTAGTTATGTTGGTGCAAGTGCAAACTTAACAGCTCCTGCT
ATTGCTGGGGGACCTGCCATTCAAGTACAGAGAAAGCCATTCTTTGGATA
TTTCCAAGTGCTTTTTTCATACATGAGACATATGGTTCAGAATGAAGGAA
TTAGATCCATGTACAAAGGCCTGACACCAGGGTTGATAGGAATCGTTCCA
GCAAAATCAGCATACTTCTTTTGCTATGCTACTGCCAAGCACAAGTTGTA
TCAAAATTCAACTTTACAATCTCATCAACATGTTGTCCATTCACTCTCTG
CAATGTCTGCAGGTATTTTCACTGGTACAGTTACAAATCCAGTATGGTAC
ATTAAGACAAAGTTGCAATTGAGTGGTAAAAATAAAACAGTCCGACAAAT
CATTGTGCGGGGTTATCGAAAACATGGAATGAAATGTTTCTTTCGAGGAA
TTACAGCATCTTATGTGGGTGTCTTGGAAACTGTGATTTACTTTCTTTTA
TATGAAGAGCTCAAAAGAATGATTTCTTCAAAGAAAATGGATGGACAAAA
GTTGAAGTTTCAAGCCCTACATTTCACTTATGCAGCTAcagtttcaaaaa
tatttgccACAACCATAATGTATCCCCATGAAGTTATAAGGACTAGGCTA
AGGCAAGATGTATTGGATGTAAATGGAGGATTGaaatataaaaacttttt
ccagAGTTTGAAGCTGGTAGCTAGAGAGGAAGGAAGAGCTGGACTTTATG
GTGGATTTGGCACTAGTTTATTACGCCAATTACCTCACACTGCAGTGACC
TTTTTGACTTATGAGGCTATAATTCATCTTTTAGACCaataaattttaag
atttgAAGCACATGCTCTGCATagcttcaattttattttttattacttta
gaTCTAGATAACTATTTTTCTATGATAAGTTTTCTCATGAAACTTTtaca
gatttttattttctgatcATTCTTTACTAGGGATgaacttttgtttattt
tatcggATTCTATCAACAGTCTGATGATTTctgaaaaaactatataaatt
AAAACAAACATCAAACAAGGAGGACGGAGGGTAGGTCGCTAGTGAATGTC
TATTATACAAATACTGTAAAAGAGAAACATCTTTAACAGCTGTTAACAGC
ACAATAATCACTCAAATAAGGATCTTTCTTAAACCTACGAAATTTCTTAA
CCTTCACTCCTCAGCCTTGAATATTATAAAATTATTCGGTTTTTTTTCCT
CTGCTTcacaaaatttggtgaaaagcTGGGGGGAAAATGGACGAGTCGTG
AGAGTTAATcctttcgaattattttaaaattcaaaagccCCGTTCGTAAA
AGTTAGCTCTTAACTTTGCTCGTTTGTGAAACCGTGACGTTAAATTGAAA
GTTTTCgtacgaaaaaaaaacagatcgGATTTTTCGAGCGTGGGAAATTA
GGAAAGTGGAATAGAGATTAAGTATCAAAATCTTAAACTTGCTTAAATTT
CAACATGCATAACATTTAAGTTTCTAAGATTCTGAAAAACATGAACCTTC
CTCaacttttgcaaaaattgagAGATCTTGTACGCCCTACAGACTTTTGC
GAAAGCTATCACGTGTAAGCTAATCATTCAATCATACTGCCAGGGTggct
aaaaaaaacttttgatggaTCCCTGCTGAGACCAAATAAAGTGTTGGTTA
AGCTCAAAATCAAGTTTTTATGAACTGAGGATTGTCTACTTGAAAATTAT
GAGGAATAACTTTCTAGAACTGTCTCGTATTTGCCATatttataagcttt
tgaagttaaaattcatATTTAAAAAAGGGTAGAAGTCATGTAAAATAAAG
GTATTAACTTCATgtaattgatttgaaaattgtttttggaTTGACTCGTT
TTATGGCATAAATGATTGttgataataattttaaaaGCCATGTACAGCTC
ATAATATGAccagtttttattgaaattggCAGTAcctcaaacttaaaaag
tcaTATGTCAAATTTAAAGTAAGACTATGTAACTTTGGGCGTCAAATGTT
CTTTTGTGTCACCCGGGTATAACTTTAACATTCAACTGTGATTTTTACTA
TACTGTAAGAGATTTTAAACGATATTGATATTATTTTCATATATATATTA
CCCTATTTTAACGATATCCTAGATTGAGCTGTTTACTAATCTTATTATGA
TGTAGAATAATTTTATACCAGTCTGTCTCTATATAATGTATTAGTTTTGT
ATAAAGTTTAGATGTTTATAAATCTTGTAGAGTTTAAAAATTCATGAATA
TTTGCT Coding sequence (CDS) from alignment at scaffold_167:71123..73878 >TCONS_00050142 ID=TCONS_00050142|Name=TCONS_00050142|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_167:71123..73878 (Clytia hemisphaerica)
ATGTCGCAGCAGCACCAGGACCCAAGCAGATCAACAAAAGAAGTTGCTAG
TTCATCTTCCAATCGACCCAATCTCGGGCCATTTGTTCATCTTCTAGCAG
GTGGGATAGGATCTACTGTTGCCCAATGTGTTACTTGTCCTCTGGATGTT
GTACAAACACGGTTAATGTCAACAAAACTAAATTTTAGTTATGTTGGTGC
AAGTGCAAACTTAACAGCTCCTGCTATTGCTGGGGGACCTGCCATTCAAG
TACAGAGAAAGCCATTCTTTGGATATTTCCAAGTGCTTTTTTCATACATG
AGACATATGGTTCAGAATGAAGGAATTAGATCCATGTACAAAGGCCTGAC
ACCAGGGTTGATAGGAATCGTTCCAGCAAAATCAGCATACTTCTTTTGCT
ATGCTACTGCCAAGCACAAGTTGTATCAAAATTCAACTTTACAATCTCAT
CAACATGTTGTCCATTCACTCTCTGCAATGTCTGCAGGTATTTTCACTGG
TACAGTTACAAATCCAGTATGGTACATTAAGACAAAGTTGCAATTGAGTG
GTAAAAATAAAACAGTCCGACAAATCATTGTGCGGGGTTATCGAAAACAT
GGAATGAAATGTTTCTTTCGAGGAATTACAGCATCTTATGTGGGTGTCTT
GGAAACTGTGATTTACTTTCTTTTATATGAAGAGCTCAAAAGAATGATTT
CTTCAAAGAAAATGGATGGACAAAAGTTGAAGTTTCAAGCCCTACATTTC
ACTTATGCAGCTAcagtttcaaaaatatttgccACAACCATAATGTATCC
CCATGAAGTTATAAGGACTAGGCTAAGGCAAGATGTATTGGATGTAAATG
GAGGATTGaaatataaaaactttttccagAGTTTGAAGCTGGTAGCTAGA
GAGGAAGGAAGAGCTGGACTTTATGGTGGATTTGGCACTAGTTTATTACG
CCAATTACCTCACACTGCAGTGACCTTTTTGACTTATGAGGCTATAATTC
ATCTTTTAGACCaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050142-exon-scaffold_167-1491911889:71123..73878 | TCONS_00050142-exon-scaffold_167-1491911889:71123..73878 | Clytia hemisphaerica | exon |
| TCONS_00050142-exon-scaffold_167-1510915933:71123..73878 | TCONS_00050142-exon-scaffold_167-1510915933:71123..73878 | Clytia hemisphaerica | exon |
| TCONS_00050142-exon-scaffold_167-1575043694:71123..73878 | TCONS_00050142-exon-scaffold_167-1575043694:71123..73878 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:71123..73878 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023395 | Mt_carrier_dom |
| IPR018108 | Mitochondrial_sb/sol_carrier |
Blast
BLAST of TCONS_00050142 vs. Swiss-Prot (Human)
Match: S2536 (Solute carrier family 25 member 36 OS=Homo sapiens GN=SLC25A36 PE=1 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 3.305e-66 Identity = 129/324 (39.81%), Postives = 189/324 (58.33%), Query Frame = -3
Query: 1471 FVHLLAGGIGSTVAQCVTCPLDVVQTRLMSTKLNFSYVGASANLTAPAIAGGPAIQVQRKPFFGYFQVLFSYMRHMVQNEGIRSMYKGLTPGLIGIVPAKSAYFFCYATAKHKLYQNSTLQSHQHVVHSLSAMSAGIFTGTVTNPVWYIKTKLQLSGKNKTVRQI-----IVRGYRKHGMKCFFRGITASYVGVLETVIYFLLYEELKRMI------SSKKMDGQKLKFQALHFT---YAATVSKIFATTIMYPHEVIRTRLRQDVLDVNGGLKYKNFFQSLKLVAREEGRAGLYGGFGTSLLRQLPHTAVTFLTYEAIIHLLD 2400
VHL AGG G TV +TCPL+VV+TRL S+ + N A A V R G L + +++ EG RS+++GL P L+G+ P+++ YF Y+ K KL N VH +SA AG T TNP+W IKT+LQL +N+ R++ + + Y+ G+K F+RG++ASY G+ ETVI+F++YE +K+ + S+ + D + +K +A F AA SK ATTI YPHEV+RTRLR++ G KY++FFQ+L L+ +EEG LY G T L+RQ+P+TA+ TYE +++LL+
Sbjct: 7 LVHLFAGGCGGTVGAILTCPLEVVKTRLQSSSVTLYISEVQLNTMAGA-------SVNRVVSPGPLHCL----KVILEKEGPRSLFRGLGPNLVGVAPSRAIYFAAYSNCKEKL--NDVFDPDSTQVHMISAAMAGFTAITATNPIWLIKTRLQLDARNRGERRMGAFECVRKVYQTDGLKGFYRGMSASYAGISETVIHFVIYESIKQKLLEYKTASTMENDEESVK-EASDFVGMMLAAATSKTCATTIAYPHEVVRTRLREE------GTKYRSFFQTLSLLVQEEGYGSLYRGLTTHLVRQIPNTAIMMATYELVVYLLN 310
The following BLAST results are available for this feature:
|
