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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049866 ID=TCONS_00049866|Name=TCONS_00049866|organism=Clytia hemisphaerica|type=transcript|length=1235bp
AGAAACTATGAAAGTTACGGATTTCTTGTTCAACCCAATgGTAATAATGA
TGGTGCTACCTTTGATATTCGTTGTCATTATGCCTAAAATGATGTCAATG
GCCGATCCTGAAGCCCAAAAGGAAATGCAAGAACAAATGGGAAAATATAA
TCAGCCACAAATTCCTGAACTTTCTGAAATGTTTTCCAACATGTTTGCTG
GGGGAGCTGAGAAGAAACGTACCAAACCATCACTAGCATCATCGGATAGA
GGTCCTGCTAAAAGATCAACTAAAAGACCAAGATAAGAGACTATTATTAA
ATCTAGAGAGAAATCTCTGTTTTCCAATGCTTTAAAAGTCGTAATGGTTC
ATGGTATTATGAGCAACTTTTATTGGCATTTTGACTCGAAGCTGTAGTTC
CAAagggaaaaaacatttttctatttAGCTAAAATGATTTGTAAGCCTTG
CAGAAGCTTACATGATGGAATTTTAAAATATCAACATTATTGAAACgatg
tttttttatcaaagataaatttttcacaaaagttgtcttgaACATGCTcg
aagttttaaatttttggtcTTGTGGTCGAATTTTTCTAATTGATTTTTGG
ATATGCGAAGAAGACGAAAACATTCGTTTGTTATCGATTGTTATAAACAA
TATTCTAAATCTATTTTGACCGTTTTTCCTTAGGTTAGCAAAAATGGAAG
TCCTTATCTACCGaaaaaagggtttaaaatcgaTGTTCTTTATCTGAAAG
ATTAACAGttattaaaatatttctaacaaaaatactcaatcaTCTGTTTA
ACGATTTTTTGGGCAGGTGGTTTTTTCCTCgtatttaattaaaaaaaggg
aTGGGAATCTTTTTCAGAGAGAAGTAAATCcttgttattttttcttctct
tgGTTAATTTTGATTAATTCTTCTTTACTTTCTTTCATCTATCTTCACGT
TAGTATCTCAGTAAAACCAATTTTATTTGTGCGTTTTTTTCCTGATCTTA
AACGGTTGGAAAATCGCATTAAGATTGTTTTAACTTTGATGAAAACTCGA
ATAGAAGTCGGTCGGATTTCTCTTTGAAATCATAATCAGTTTACCTTAAT
GTTTTATTGACCTGAAAGATACCCAAGCGTGACAAACACCACCTGGGACA
TGCTATCAATACTTTTTTTGTGTCAGAATTATTTACTGAAAAGGTGTTAG
TATAGATtttaaaatgattgaataagatATTAAAC Run BLAST on NCBI transcript from alignment at scaffold_167:93226..95364+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049866 ID=TCONS_00049866|Name=TCONS_00049866|organism=Clytia hemisphaerica|type=transcript|length=2139bp|location=Sequence derived from alignment at scaffold_167:93226..95364+ (Clytia hemisphaerica)
AGAAACTATGAAAGTTACGGATTTCTTGTTCAACCCAATggtaatttatt
ttattttgaaaatctcatGTTTCTGGTATTGTTGACAATACTTCCCAAAT
AATTTGAGTAGAGGATTTCTCGGACTTCAATGAGCAGAGACGTGTAAACC
TTACTTTATCTCGTCCAGTCACTAGGATACTACTATTACTACGCAATACT
TGATGATTGACTAAAGTTATTCGAACCAGACTATTCTATTCTAATGTAAG
CTTTAGTTTTCATCATAAACTTCTCAAGTTCATCCAAAATGACCAATTGG
ATCTTTCTTGACGTTGTAGGTAATAATGATGGTGCTACCTTTGATATTCG
TTGTCATTATGCCTAAAATGATGTCAATGGCCGATCCTGAAGCCCAAAAG
GTAAcctaaaaatgaattattttaCTTCTGAAGTAGTCTTCTGAGAGTAT
CAAAGCCGCTAATTTATTATATGTCAATTCCTTTGCTTGGTCAATGGTTT
TTTAgaccctaaattcggttaaagaCCTTTTTTGCAAGCCATATAACATA
TCAAGGAACCGGCCTTGTAATACATGCATTTAGATGTGTCTGAAAGTCAT
ACAATgggttttagaatttttacTTTATCTTTTAAATCAAAGAGGATATA
TCTTTTGGTTTTATGTTGAACGTGACTGGGTAGCTCATTCGGTAGAGCAT
TAACTTTACAAACTAAGGTTGtcggttcgatccccggtcatcACCACCTC
AGCAGATGAGTAGCTTTGATTGGGTAAACTAGGTGATCTAGGCgttaagt
tactgggagcttaGGATAGGTGTGGCGTTCCACCTCAGCATTTGACCTCC
TAGGTCTAGCGTCGATAGGTAGATAAGGGGACATACTGTCTCATTTCCGG
TTTCTTcagccgacagccaccagatgaatatgcTTACTTATTTTATATTG
GCCGCACTTCGTTTATGGTCCAAAACCTGTGAATGATAGCTAAAGATAAT
AAACTTTGTGACTTTTCTTCCACAGGAAATGCAAGAACAAATGGGAAAAT
ATAATCAGCCACAAATTCCTGAACTTTCTGAAATGTTTTCCAACATGTTT
GCTGGGGGAGCTGAGAAGAAACGTACCAAACCATCACTAGCATCATCGGA
TAGAGGTCCTGCTAAAAGATCAACTAAAAGACCAAGATAAGAGACTATTA
TTAAATCTAGAGAGAAATCTCTGTTTTCCAATGCTTTAAAAGTCGTAATG
GTTCATGGTATTATGAGCAACTTTTATTGGCATTTTGACTCGAAGCTGTA
GTTCCAAagggaaaaaacatttttctatttAGCTAAAATGATTTGTAAGC
CTTGCAGAAGCTTACATGATGGAATTTTAAAATATCAACATTATTGAAAC
gatgtttttttatcaaagataaatttttcacaaaagttgtcttgaACATG
CTcgaagttttaaatttttggtcTTGTGGTCGAATTTTTCTAATTGATTT
TTGGATATGCGAAGAAGACGAAAACATTCGTTTGTTATCGATTGTTATAA
ACAATATTCTAAATCTATTTTGACCGTTTTTCCTTAGGTTAGCAAAAATG
GAAGTCCTTATCTACCGaaaaaagggtttaaaatcgaTGTTCTTTATCTG
AAAGATTAACAGttattaaaatatttctaacaaaaatactcaatcaTCTG
TTTAACGATTTTTTGGGCAGGTGGTTTTTTCCTCgtatttaattaaaaaa
agggaTGGGAATCTTTTTCAGAGAGAAGTAAATCcttgttattttttctt
ctcttgGTTAATTTTGATTAATTCTTCTTTACTTTCTTTCATCTATCTTC
ACGTTAGTATCTCAGTAAAACCAATTTTATTTGTGCGTTTTTTTCCTGAT
CTTAAACGGTTGGAAAATCGCATTAAGATTGTTTTAACTTTGATGAAAAC
TCGAATAGAAGTCGGTCGGATTTCTCTTTGAAATCATAATCAGTTTACCT
TAATGTTTTATTGACCTGAAAGATACCCAAGCGTGACAAACACCACCTGG
GACATGCTATCAATACTTTTTTTGTGTCAGAATTATTTACTGAAAAGGTG
TTAGTATAGATtttaaaatgattgaataagatATTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049866-exon-scaffold_167-1491911889:93226..93265 | TCONS_00049866-exon-scaffold_167-1491911889:93226..93265 | Clytia hemisphaerica | exon |
| TCONS_00049866-exon-scaffold_167-1510915933:93226..93265 | TCONS_00049866-exon-scaffold_167-1510915933:93226..93265 | Clytia hemisphaerica | exon |
| TCONS_00049866-exon-scaffold_167-1575043694:93226..93265 | TCONS_00049866-exon-scaffold_167-1575043694:93226..93265 | Clytia hemisphaerica | exon |
| TCONS_00049866-exon-scaffold_167-1491911889:93545..93625 | TCONS_00049866-exon-scaffold_167-1491911889:93545..93625 | Clytia hemisphaerica | exon |
| TCONS_00049866-exon-scaffold_167-1510915933:93545..93625 | TCONS_00049866-exon-scaffold_167-1510915933:93545..93625 | Clytia hemisphaerica | exon |
| TCONS_00049866-exon-scaffold_167-1575043694:93545..93625 | TCONS_00049866-exon-scaffold_167-1575043694:93545..93625 | Clytia hemisphaerica | exon |
| TCONS_00049866-exon-scaffold_167-1491911889:94251..95364 | TCONS_00049866-exon-scaffold_167-1491911889:94251..95364 | Clytia hemisphaerica | exon |
| TCONS_00049866-exon-scaffold_167-1510915933:94251..95364 | TCONS_00049866-exon-scaffold_167-1510915933:94251..95364 | Clytia hemisphaerica | exon |
| TCONS_00049866-exon-scaffold_167-1575043694:94251..95364 | TCONS_00049866-exon-scaffold_167-1575043694:94251..95364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:93226..95364 + |
Blast
The following BLAST results are available for this feature:
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