TCONS_00049868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049868
Unique NameTCONS_00049868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049868 ID=TCONS_00049868|Name=TCONS_00049868|organism=Clytia hemisphaerica|type=transcript|length=1527bp
TAGCATTTACACTTGATCCAGATCAAGTATGGCAGCTCAACTACTACGAG
GGAAATAAGACATTCCCAGAAAACAGGACAAGAAACAATACCAATATTGG
AACACTTTATCCTGGCACCGCTATTGAAATCGACTGGAGTATTGAATCTT
ACATTGCTTTCTCCAATGGTCAAAACAGTGGTATAGATATTGATCAGCTC
TCTGGTATATGTTTAACAGACTTATCAACCTGTGTCAATGGGTTTAGTCT
TTCGTTGTGGATAAAATGGGATCAATGGGCCACTGATTTTATTATAAGTT
CTTCAAAATTTAATTGGAAACATTTTACTGAAGATACCATACCTATTGAA
GTTTGGAATGGAGAAGATAAGGCTTGGAGGTTGTTTCATAGTAGAGATAC
CACAAAGAAATGGTCTTTTTACGTTATTACTTGGTCCAAAGATGATGGTA
TCACAGTGTTTGTAGATGGCGTTAAAGATCTAAGAAACACAATCGAAGCT
ACTTCTTCAATGTTCAACCCTTTCAATCAAATGAAACCTCAAAGAATTTC
TTTAGGGAAATCAGCAGCAAAGGTTTCACCCGAATCGCCAAGGCCGAATA
TTTCGTTGAGAAGATTTGCAATATGGAATAAGCAATTATCTGAAGATGAA
GTTCTGACAGTTTATCAACAAGAAGCTTCACCAATGGAATTTACTGGTAT
TTCCAGCGCTGGTCCGATCAGTTATTCTTTATTCACGGAGCATGCAAATC
ACACACTAACTGGCCACACTTTCAAAACTATATTCGTCCAAAACCAAata
gaatgttttgaaaaatgcacAATTGAATACAAAGTCCGGTGTAAGTCCTA
TAATTTTGGTGTGCAGAAAGAAACAAAGATCTGTGAATTAAACGAAAAGC
GAAAATCGGATGTCGCTCGCTGGTTTTTCACTTCAAGTACGgaagaattt
cattttaattattACGAGATTATGGAATAATTTTGTTATTGAGTAATAAT
TTGCATATCCAAAGCATACTTTATCAACCAATGAGTGAAATAATGAAAGT
TCATCATAGCCTAAAGTGAATTGACGAATGAGCTTTACGCCTGGCCCCAA
CCAATTAACAACCAGTTCACTCAAAAGTCGTTTGTCATGTGAACTTATTG
TAAAGTGATACTATACAATACTTTTTTAAAgggcataaactttcgcgggt
attaaatttcgcggttgagcctattcgcgaaattcaaaaattttgcgggg
acttaatttcccGTGTGGCACTATTATAAATTGgatggcaatattttcac
ggtTTTGTGACTtctactgtcaaatcatgcatgttggttgttgaaataca
cattatttgcgcttctttgatacaagtaaccattcaaatagtatttattt
gacatattttgagtattgtttagaaatatttcgcggatgaggcccttcca
aatttccaatgggacttaatttcgcggattttcgcggatgacacccaaat
ccgcaaaatcggcgaaatttaatcccc
Run BLAST on NCBI

protein sequence of TCONS_00049868-protein

>TCONS_00049868-protein ID=TCONS_00049868-protein|Name=TCONS_00049868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
AFTLDPDQVWQLNYYEGNKTFPENRTRNNTNIGTLYPGTAIEIDWSIESY
IAFSNGQNSGIDIDQLSGICLTDLSTCVNGFSLSLWIKWDQWATDFIISS
SKFNWKHFTEDTIPIEVWNGEDKAWRLFHSRDTTKKWSFYVITWSKDDGI
TVFVDGVKDLRNTIEATSSMFNPFNQMKPQRISLGKSAAKVSPESPRPNI
SLRRFAIWNKQLSEDEVLTVYQQEASPMEFTGISSAGPISYSLFTEHANH
TLTGHTFKTIFVQNQIECFEKCTIEYKVRCKSYNFGVQKETKICELNEKR
KSDVARWFFTSSTEEFHFNYYEIME
Run BLAST on NCBI

transcript from alignment at scaffold_167:105881..108005+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049868 ID=TCONS_00049868|Name=TCONS_00049868|organism=Clytia hemisphaerica|type=transcript|length=2125bp|location=Sequence derived from alignment at scaffold_167:105881..108005+ (Clytia hemisphaerica)
TAGCATTTACACTTGATCCAGATCAAGTATGGCAGCTCAACTACTACGAG
GGAAATAAGACATTCCCAGAAAACAGGACAAGAAACAATACCAATATTGG
AACACTTTATCCTGGCACCGCTATTGAAATCGACTGGAGTATTGAATCTT
ACATTGCTTTCTCCAATGGTCAAAACAGTGGTATAGATATTGATCAGCTC
TCTGGTATATGTTTAACAGACTTATCAACCTGTGTCAATGGGTTTAGTCT
TTCGTTGTGGATAAAATGGGATCAATGGGCCACTGATTTTATTATAAGTT
CTTCAAAATTTAATTGGAAACATTTTACTGAAGATACCATACCTATTGAA
GTTTGGAATGGAGAAGATAAGGCTTGGAGGTTGTTTCATAGTAGAGATAC
CACAAAGAAATGGTCTTTTTACGTTATTACTTGGTCCAAAGATGATGGTA
TCACAGTGTTTGTAGATGGCGTTAAAGATCTAAGAAACACAATCGAAGCT
ACTTCTTCAATGTTCAACCCTTTCAATCAAATGAAACCTCAAAGAATTTC
TTTAGGGAAATCAGCAGCAAAGGTTTCACCCGAATCGCCAAGGCCGAATA
TTTCGTTGAGAAGATTTGCAATATGGAATAAGCAATTATCTGAAGATGAA
GTTCTGACAGTTTATCAACAAGAAGGTAAGGAAAGACTTTGTTGGCCTCA
ATTTGTTGAAAGGAAATAACTGTTAGTCGGTAACGAATGATCTTAGTACG
ACTACTTCATATTTTGTCCTTTATATTTACTACACCACTGTCTGTTGACC
GGGTGAGAACTCTCTAGCCAATGAGAATTAATGGGAACGAATCTAACTAC
TCccaaatagaataaaatatcTTGTTATCAGTGAATTTGAATCTGATTCT
AGTTCAAAAGCACAACTGGATCTCAAATGTTATTTTGCAACAACACAGTT
ATACTAGGCTGCGTATTCTCTCACTGGGTGACTCTTTTGTCGCTTTTTTT
CAGTGAATACCAACAGATCCATGACACTGGAGTCATTACTTCATTAAAAG
TCCATTCACTTTAAGTGTGCATTCTTCTTTGTTATCGTGTGGAAACCATA
TCAGCGTAATATAcaagaaatttgcttaagaGTGGTTTCCCAATGGCTTC
AAAAAAGAGtacacacttaaagcgaatagATTTTAGATTGCAAAGTAATG
TCTGAGACATTTCTGTTTTATACCATGGaggaaaatgatattttagttGA
TAATACTGACATTTTCATTCCAGCTTCACCAATGGAATTTACTGGTATTT
CCAGCGCTGGTCCGATCAGTTATTCTTTATTCACGGAGCATGCAAATCAC
ACACTAACTGGCCACACTTTCAAAACTATATTCGTCCAAAACCAAataga
atgttttgaaaaatgcacAATTGAATACAAAGTCCGGTGTAAGTCCTATA
ATTTTGGTGTGCAGAAAGAAACAAAGATCTGTGAATTAAACGAAAAGCGA
AAATCGGATGTCGCTCGCTGGTTTTTCACTTCAAGTACGgaagaatttca
ttttaattattACGAGATTATGGAATAATTTTGTTATTGAGTAATAATTT
GCATATCCAAAGCATACTTTATCAACCAATGAGTGAAATAATGAAAGTTC
ATCATAGCCTAAAGTGAATTGACGAATGAGCTTTACGCCTGGCCCCAACC
AATTAACAACCAGTTCACTCAAAAGTCGTTTGTCATGTGAACTTATTGTA
AAGTGATACTATACAATACTTTTTTAAAgggcataaactttcgcgggtat
taaatttcgcggttgagcctattcgcgaaattcaaaaattttgcggggac
ttaatttcccGTGTGGCACTATTATAAATTGgatggcaatattttcacgg
tTTTGTGACTtctactgtcaaatcatgcatgttggttgttgaaatacaca
ttatttgcgcttctttgatacaagtaaccattcaaatagtatttatttga
catattttgagtattgtttagaaatatttcgcggatgaggcccttccaaa
tttccaatgggacttaatttcgcggattttcgcggatgacacccaaatcc
gcaaaatcggcgaaatttaatcccc

Coding sequence (CDS) from alignment at scaffold_167:105881..108005+

>TCONS_00049868 ID=TCONS_00049868|Name=TCONS_00049868|organism=Clytia hemisphaerica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_167:105881..108005+ (Clytia hemisphaerica)
GCATTTACACTTGATCCAGATCAAGTATGGCAGCTCAACTACTACGAGGG
AAATAAGACATTCCCAGAAAACAGGACAAGAAACAATACCAATATTGGAA
CACTTTATCCTGGCACCGCTATTGAAATCGACTGGAGTATTGAATCTTAC
ATTGCTTTCTCCAATGGTCAAAACAGTGGTATAGATATTGATCAGCTCTC
TGGTATATGTTTAACAGACTTATCAACCTGTGTCAATGGGTTTAGTCTTT
CGTTGTGGATAAAATGGGATCAATGGGCCACTGATTTTATTATAAGTTCT
TCAAAATTTAATTGGAAACATTTTACTGAAGATACCATACCTATTGAAGT
TTGGAATGGAGAAGATAAGGCTTGGAGGTTGTTTCATAGTAGAGATACCA
CAAAGAAATGGTCTTTTTACGTTATTACTTGGTCCAAAGATGATGGTATC
ACAGTGTTTGTAGATGGCGTTAAAGATCTAAGAAACACAATCGAAGCTAC
TTCTTCAATGTTCAACCCTTTCAATCAAATGAAACCTCAAAGAATTTCTT
TAGGGAAATCAGCAGCAAAGGTTTCACCCGAATCGCCAAGGCCGAATATT
TCGTTGAGAAGATTTGCAATATGGAATAAGCAATTATCTGAAGATGAAGT
TCTGACAGTTTATCAACAAGAAGCTTCACCAATGGAATTTACTGGTATTT
CCAGCGCTGGTCCGATCAGTTATTCTTTATTCACGGAGCATGCAAATCAC
ACACTAACTGGCCACACTTTCAAAACTATATTCGTCCAAAACCAAataga
atgttttgaaaaatgcacAATTGAATACAAAGTCCGGTGTAAGTCCTATA
ATTTTGGTGTGCAGAAAGAAACAAAGATCTGTGAATTAAACGAAAAGCGA
AAATCGGATGTCGCTCGCTGGTTTTTCACTTCAAGTACGgaagaatttca
ttttaattattACGAGATTATGGAATAAGCATTTACACTTGATCCAGATC
AAGTATGGCAGCTCAACTACTACGAGGGAAATAAGACATTCCCAGAAAAC
AGGACAAGAAACAATACCAATATTGGAACACTTTATCCTGGCACCGCTAT
TGAAATCGACTGGAGTATTGAATCTTACATTGCTTTCTCCAATGGTCAAA
ACAGTGGTATAGATATTGATCAGCTCTCTGGTATATGTTTAACAGACTTA
TCAACCTGTGTCAATGGGTTTAGTCTTTCGTTGTGGATAAAATGGGATCA
ATGGGCCACTGATTTTATTATAAGTTCTTCAAAATTTAATTGGAAACATT
TTACTGAAGATACCATACCTATTGAAGTTTGGAATGGAGAAGATAAGGCT
TGGAGGTTGTTTCATAGTAGAGATACCACAAAGAAATGGTCTTTTTACGT
TATTACTTGGTCCAAAGATGATGGTATCACAGTGTTTGTAGATGGCGTTA
AAGATCTAAGAAACACAATCGAAGCTACTTCTTCAATGTTCAACCCTTTC
AATCAAATGAAACCTCAAAGAATTTCTTTAGGGAAATCAGCAGCAAAGGT
TTCACCCGAATCGCCAAGGCCGAATATTTCGTTGAGAAGATTTGCAATAT
GGAATAAGCAATTATCTGAAGATGAAGTTCTGACAGTTTATCAACAAGAA
GCTTCACCAATGGAATTTACTGGTATTTCCAGCGCTGGTCCGATCAGTTA
TTCTTTATTCACGGAGCATGCAAATCACACACTAACTGGCCACACTTTCA
AAACTATATTCGTCCAAAACCAAatagaatgttttgaaaaatgcacAATT
GAATACAAAGTCCGGTGTAAGTCCTATAATTTTGGTGTGCAGAAAGAAAC
AAAGATCTGTGAATTAAACGAAAAGCGAAAATCGGATGTCGCTCGCTGGT
TTTTCACTTCAAGTACGgaagaatttcattttaattattACGAGATTATG
GAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031622XLOC_031622Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049868-proteinTCONS_00049868-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049868-exon-scaffold_167-1491911889:105881..106555TCONS_00049868-exon-scaffold_167-1491911889:105881..106555Clytia hemisphaericaexon
TCONS_00049868-exon-scaffold_167-1510915933:105881..106555TCONS_00049868-exon-scaffold_167-1510915933:105881..106555Clytia hemisphaericaexon
TCONS_00049868-exon-scaffold_167-1575043694:105881..106555TCONS_00049868-exon-scaffold_167-1575043694:105881..106555Clytia hemisphaericaexon
TCONS_00049868-exon-scaffold_167-1491911889:107154..108005TCONS_00049868-exon-scaffold_167-1491911889:107154..108005Clytia hemisphaericaexon
TCONS_00049868-exon-scaffold_167-1510915933:107154..108005TCONS_00049868-exon-scaffold_167-1510915933:107154..108005Clytia hemisphaericaexon
TCONS_00049868-exon-scaffold_167-1575043694:107154..108005TCONS_00049868-exon-scaffold_167-1575043694:107154..108005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:105881..108005 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.484611	0.34137	0.442703	0.181143	0.218445	0.376094	0.381702	0.488246	0.296855	0.141128	0.410354	0.145266	2.33394	1.83748	0.0925466	0.099123	0.712297	0.872525	5.96194	5.7127	2.18651	2.22578	0.619372	0.539848	1.15961	1.3277	0.0764731	0.0798585	0.120549	0.153291
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003609Pan_app
IPR013320ConA-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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