TCONS_00050017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050017
Unique NameTCONS_00050017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1027

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050017 ID=TCONS_00050017|Name=TCONS_00050017|organism=Clytia hemisphaerica|type=transcript|length=1027bp
gaaaaataaagttttgcGGAACAAAACTACAAACACTTGAGCTATGTAAC
CAAAAAGCTCGCTAAGCGAGATGCCACCAAAATCtGGCAAATCCTCGGac
aagaaatcaaagaaagggAGAGCTGCACAAACCCTCCAAAGatatgcTAA
AGGATGGATAGCAAGATTCTTTTATCGACAGTTCAGACACATTGCAAAAT
TGCGCAAGACGGCTGGGCGTGATTTGATCTCCATTTACAAACAACACATC
TATGATATAATCCTTCGACATGACAATGGTCAAAGTCTTGAAAAGCCAAA
GGTTGCTCTTGATCTTCGCGAACTTTGTGATTACTATATCAAATTAGAca
AATATGAGATTGCGTTTGACGAACTGTCAGAAGAAGACCGTACAACCATC
AAATACCAAGAAGTTCAACTGTACTTTGAAGTGCTCGGACTGACACCCAC
AAAAGCTGAAATAAGAATAGCAACAGATATAATACTACGAGAGGACTCTC
CAAACTATTTAACATATGGTTACACCAAAGAAAATGTAATTGACATAGCA
CTACATATTTTTGTACCGAGAGGAACACATTTACAAAACACAAGAAAATC
AACATGGCTCTGTCCAATCGTTGGCAATGATGACGCACTCAGGTTTGGAG
CTGATAAGATCAAACAAATTACTATGGACAAATGTATGCGGATGACAGCT
CTATCAATACGTGAGAGACAAAATGCATATACGCTGGGCGATATCGAAAA
GATTGAAGAGGCGGAATACAAGGCAGCACAATGGCACAAAGCAAAAATCG
AAGAACACCGGAAACTTTATAAAAGTANGACAGCTCTATCAATACGTGAG
AGACAAAATGCATATACGCTGGGCGATATCGAAAAGATTGAAGAGGCGGA
ATACAAGGCAGCACAATGGCACAAAGCAAAAATCGAAGAACATCGGAAAC
TTTATAAAAGTAATGGGGGAAGTAATAGAAAAGGAAAAAGTgctaaagga
aagaaaaagaaataaggtcataaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_167:133920..139203-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050017 ID=TCONS_00050017|Name=TCONS_00050017|organism=Clytia hemisphaerica|type=transcript|length=5284bp|location=Sequence derived from alignment at scaffold_167:133920..139203- (Clytia hemisphaerica)
GAAAAATAAAGTTTTGCGGAACAAAACTACAAACACTTGAGCTATGTAAC
CAAAAAGCTCGCTAAGCGAGATGCCACCAAAATCGTAAGTATAGAATCAT
TGATTGTTTCAGCTAAAATGTCTTTTTTGAACCATTTCTGATCATTGAAA
CCAAAAAAATAGTTTGAAATGTAACAAAAAAAATTTCTTTTATTTCAGTG
GCAAATCCTCGGACAAGAAATCAAAGAAAGGGAGAGCTGCACAAACCCTC
CAAAGGTATTAATTAATCTAACTCTTTTTATTTTTTTTGACAGCCACCAC
CGCGTTGGTGTTTACACTGCCCCTAAGCAGCCTCAACGACGCTTAACTTT
TTCAAGCCGAGAGGAGCAATTTAGTCAAAAAGAAGAAAATTTTCTAATTT
TTTTGCGCTCTTCCAGTGGGAAGGGTACCCAGTGGGTTTGTGAGAAGGGG
GTGTTATTAGGTCTTAAACAATACCATTTAGGGCACTAACAATTGTATAA
TAAAAATTGATGTTGAAGATTCTAACACAGGTGTATTTCATGATATTCAT
GACGTAATGTTTTCAGTGGTTAAACCAAGGTTTTTCGTCCTAGACGGAAA
ACGGATTTTACATTGCACTTGAAATTTCGGTGAATCATACCGAATTTTGA
GACAGCAATACCTCTTTATATACTTCACTAAAACGGAAATTCGTCTGAGA
CGGAAGAACTTTGAGCACTGAAAACTTTTATACGAAAGCACCCAAAATAG
TCCTGGTGTTTGGTAATATTTTTTATTGTTTAAATTCAAAATTAGTGACA
AACTGGGCTTTTTAGGTGCTTTCGTATAAAACATTACGTCATGAACATCA
CTAACAAAATTGATTCTGAAGATTCTAATACACCCTTTCGACCGTAGCCA
CCAATTGTCGCACGGGCATCTTTTTGTCCGTTTTACCACCCTAAAACCGT
CCCAGTCATTTTTCGCATCTAAAGACAATAGAAAAAGTGTAAAAAAAGGA
TTGAATCGAGTTTAGGATGGTAAATTGAATTATAAAGTGGCACGTGCCTG
ATCACTACGACTACGGTCGAAAAGGTGTAATATTTGCTTCTGTAAGGATT
AACTTCTTTTTTTGGAATTTCATTTTCAGATATGCTAAAGGATGGATAGC
AAGATTCTTTTATCGACAGTTCAGACACATTGTAAGTTAGATTTGGAGTT
GAATTGACCTTTCCCGTAATTCACAAAACAGATGCTCGCGCATTGTTTTG
ATGCTCTCCATCGTTTGGTCTCTGGAGGTAAACAAACCCGTTTTTGTCTG
CGTCTCCTTAGAGGAAGTTTACCCCTCGCAGGCAAAAACGCGTTCCAAAC
AATCTTATACACAACGGTGGAGCGCCTGGAAGTTTGAATTACGGGAAAGG
TGTATTGACCAGAAATTTCCTCGAATCGAGTAATAAGTAACCAGCAACGT
ACACTCTAAATTGTGTACGGATTAATTTTCCCCTGATGAAAAATAGACCT
TTTTCTAATCAATTAAAAACTCCAGCATTAAAAAAATAGGTTCTGCATAA
TTAACATAAGCAGTGTGTACTAAATTATTCTTATCATTGTTTTGATGCTG
GAGTCAGCTAAGAGTTCTTAATTATTCAACATGTCATTGTAATTAGGAAA
AGGTCTATAAGCAGGACGAGGATTAACAGTCAAATAGTTTTTGATACGTA
TCTAGAAAAGAACGGCTTACACTCAGAACTTGTGTTTATCAGTATTATCA
AAAACACCTTTTTCACAAGTGCTCTAAGTGTAAACCGGCCTTAAANGTTT
ATCAGCATTATCAAAGACACCTTTTTCACAAGTGCCCTAAGTGTAAACCG
GCCTTAAATTCCCTCACTTACAGGCAAAATTGCGCAAGACGGCTGGGCGT
GATTTGATCTCCATTTACAAACAACACATCTATGATATAATCCTTCGACA
TGACAATGGTCAAAGTCTTGAAAAGCCAAAGGTTGCTCTTGATCTTCGCG
AACTTTGTGATTACTATATCAAATTAGACAGTAAGTCAATATAATTATTT
ATTCCATCATGCTATGCCAGTACGGATTAGTTGTTAAAAAAAACAATCAT
ATCAATGATAATGATTGATACAGCTCAATCTTTATTCTGAATTTTTGCAA
ATGGGAGAATTTCACTTCCAGATAAAAAAAAATCAAATTCAAAATAGGAA
ATTTACAGATATAAATTTGGTCTCATATTAATATGAGACCAAATTTATAG
TTTTGTCAGTATTAACCTATGTTGCTTCTCAGTTACGGAGACGGTTAATT
TACAGAATGATTATACAGTAGAGTCTCTTTGAGCTCGAACCTCCAAAACT
TGAATGTCTCCTTGACGTAAACAAGTTTTCCCGTCCCTCCAGTAAACAAT
GTATTATAAACCTTACTCCATAACTCGAAATTTCCTTAACTCAAATTTGT
GTTCCCTGTGCGTGTTCGAGCTGTGAAGACTACATTGTATTGATAAATGG
CGATGACAACCACAGATTTCAGTAAAGCCCGAAGGGCTAGATGGCTAGAT
GTCGTGCTTTAAGCTATTCCTACCAAAAAATGAATATCGCAAAAAATATT
GCTGCTATTGTTTTCCAAAACCCGCAAAGCTTCTTATTGGTCAAGCGTCA
ATTCTATTGTAATGTCACGTGACTTAGGTAGGATTTCCTACTTAACCTTG
GCACACTTTTCAGCCAAAGCATGACATCTAGACGACATCGGGCTTTATAA
ATCTATGATGGCAACATCCTAAAAACAGTACAAACCTTGGGCTATTTAGG
CTCTCTATTCCAAGAAATCTTCGCATTATAAAGAGGCAATTCAAAACTAA
ACCATGCCATTTTCCCCTCTTGTAGAATATGAGATTGCGTTTGACGAACT
GTCAGAAGAAGACCGTACAACCATCAAATACCAAGAAGTTCAACTGTACT
TTGAAGTGCTCGGACTGACACCCACAAAAGCTGAAATAAGAATAGCAACA
GATATAATACTACGTAGGTTTTACTCATTCAAATTATATTATCTAGTAAA
CAGAAATGTATGTCAAGACTTGAGTTTAATTTAACCCTATTCATACTATG
CTTTTAGGGGCAGGCTAGGGTGGGGGTGTACCACCCCTAAACTTTTGATC
TAGTGGGTCTTTTTGGATAAAATTTGGCACACAAGATCCTTGTCATATAA
GGTAGCCTTTGACAAAGATTTTTTTGATGACGTCATTCATCATGCCCAAA
GTGAGCAAAAACCGAAAAGTTAAGAATTTACAGAAAATTTCATGCCAAAA
ACCGCCCCAAAAGCTTTATTATTTCAAGAGCTATTCACATTAGTTCCACC
CCCGAACAGAAACACCCCCCTAATAGGGTTAAGTTGTAGATAGGTGTNTT
ACAGAAAATTTCATGCCAAAAGCCGCACCAAAAGCTTTATTATTTCAAGA
GCTATTCACATTAGTTCCACCCCGAACAGAAACACCCCCCCCTAATAGAG
TTAAGTTGTAGATAGGAGTGTGATATTTTATGAAGCTTTAGAAAGCAAAT
ATAAATTTCTATCGCATTTTGAGTTTTCCAAAATGCTCCAACTTTACCAT
CTTATTAGCAAGTCTATGTATGTGTGTTTCCTGCAACGGAATAGCTAGAT
CCTGATCAATTGAGGACGATTTCGCGGATCATAAATGCGGGTTATTCTAA
ATCGCTTCTGTTCTCTAAAGTGCAAATACATTAACTCGCTATTTACATCC
CCTTATAATACGTCAAGCTACATTGGGCATTTCCAGAAATAGTCCGTGCC
CCCTGTTGAGGATATCAGATATCCAGGGGGTTAAAGATTTTTGTTCAAAA
GTGGATATCCAGGGGGTTAAATATGTACAAGGGAGGGGATATCTAGGTGG
TAAAGTGTCTTTTCAAGCAAAAAATACGATATCCGGGGGTAAGCATCTTT
ATAAGAGAGGATATCCAGGGGGATGAGCATATTTTTAAGAGTGGATATCC
AGGGGGTCTTTACTAATAAAGTAGGATATCCGGGGGTTCGATACTTCGAA
AAATCAATATCCTCAACAGTGGGGGTAAATTTTTTTTCTGGAAAAGCCCA
TTTTGAATAAAAGACAAGAAAATTATTCATTCCTCCTTACAAATTTAGGA
GAGGACTCTCCAAACTATTTAACATATGGTTACACCAAAGAAAATGTAAT
TGACATAGCACTACATATTTTTGTACCGAGAGGAACACATTTACAAAACA
CAAGAAAATCAACATGGCTCTGTCCAATCGTTGGCAATGATGACGCACTC
AGGTTTGGAGCTGATAAGATCAAACAAATTACTATGGGTGAGTGTGTTTT
TACAGGTGTTTACAGGACTACAGTGGACTTTTGTTAGTTCGAACTTCTAT
TATTCGACTATTTCTGTAATTTAAACAAACTAGTTTTTCACGTTCAAGAT
TTATAAAGCTTTAAGATCAAAGAAGATAATACACATTAGTCAATACGTTT
TATGTATGAAGTTGTACCGTAAATTGGTCTAATGTCGACATCCCTCTTCT
AATTCCGACACCCAGTTTTAGAGATAGGAATAAAAGTAAGGTCAGAATCA
CTGATAGACAGAAGATTTTTTCCTCTCTGGTCTCTAAGCAAAGAAATATA
GTTTCCATAGGTAATTCTGACCTTACCATTATTCCTATCTGTGAAGAAGG
GTGTTGGGATTAGAAGAGGGGTGTCGACATTAGATCAAGTTATGGTATGG
GCTTTGCAAGACGAAATAAATACCTTAATGATGATGTGGTGGTGAGATTT
CAGTATCAACGACCATCAAACCATTATTTGACAAGTCCATTGCTGTGAAT
TTAGTGTTATTTTGTCCTGTAAAGTATACTTGATTGTTAAGAATTTTGAA
AAATTGATTACGTAACCCTTTATATTTCTATTAGACAAATGTATGCGGAT
GACAGCTCTATCAATACGTGAGAGACAAAATGCATATACGCTGGGCGATA
TCGAAAAGATTGAAGAGGCGGAATACAAGGCAGCACAATGGCACAAAGCA
AAAATCGAAGAACACCGGAAACTTTATAAAAGTANGACAGCTCTATCAAT
ACGTGAGAGACAAAATGCATATACGCTGGGCGATATCGAAAAGATTGAAG
AGGCGGAATACAAGGCAGCACAATGGCACAAAGCAAAAATCGAAGAACAT
CGGAAACTTTATAAAAGTAATGGGGGAAGTAATAGAAAAGGAAAAAGTGC
TAAAGGAAAGAAAAAGAAATAAGGTCATAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031685XLOC_031685Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050017-exon-scaffold_167-1575043694:139120..139203TCONS_00050017-exon-scaffold_167-1575043694:139120..139203Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1575043694:138949..139005TCONS_00050017-exon-scaffold_167-1575043694:138949..139005Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1575043694:138023..138074TCONS_00050017-exon-scaffold_167-1575043694:138023..138074Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1575043694:137174..137330TCONS_00050017-exon-scaffold_167-1575043694:137174..137330Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1575043694:136191..136328TCONS_00050017-exon-scaffold_167-1575043694:136191..136328Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1575043694:134867..135055TCONS_00050017-exon-scaffold_167-1575043694:134867..135055Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1575043694:133920..134269TCONS_00050017-exon-scaffold_167-1575043694:133920..134269Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1510915933:139120..139203TCONS_00050017-exon-scaffold_167-1510915933:139120..139203Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1510915933:138949..139005TCONS_00050017-exon-scaffold_167-1510915933:138949..139005Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1510915933:138023..138074TCONS_00050017-exon-scaffold_167-1510915933:138023..138074Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1510915933:137174..137330TCONS_00050017-exon-scaffold_167-1510915933:137174..137330Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1510915933:136191..136328TCONS_00050017-exon-scaffold_167-1510915933:136191..136328Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1510915933:134867..135055TCONS_00050017-exon-scaffold_167-1510915933:134867..135055Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1510915933:133920..134269TCONS_00050017-exon-scaffold_167-1510915933:133920..134269Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1491911889:139120..139203TCONS_00050017-exon-scaffold_167-1491911889:139120..139203Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1491911889:138949..139005TCONS_00050017-exon-scaffold_167-1491911889:138949..139005Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1491911889:138023..138074TCONS_00050017-exon-scaffold_167-1491911889:138023..138074Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1491911889:137174..137330TCONS_00050017-exon-scaffold_167-1491911889:137174..137330Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1491911889:136191..136328TCONS_00050017-exon-scaffold_167-1491911889:136191..136328Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1491911889:134867..135055TCONS_00050017-exon-scaffold_167-1491911889:134867..135055Clytia hemisphaericaexon
TCONS_00050017-exon-scaffold_167-1491911889:133920..134269TCONS_00050017-exon-scaffold_167-1491911889:133920..134269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:133920..139203 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	6.62836e-09	3.94208	0.877349	1.10808	2.07038	2.26074	0	0	0	0	0	0	0.82046	0.774852	0	0	0	0	0	0.610918	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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