TCONS_00004918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004918
Unique NameTCONS_00004918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length915

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004918 ID=TCONS_00004918|Name=TCONS_00004918|organism=Clytia hemisphaerica|type=transcript|length=915bp
TACTTGAGCAGTGAAGTTTTCGACGCCCTTAGCTGGATCATTTTTGCTAT
CAGAAGCAACCATACCACGTTTGATTTCTTttactgaaacatttttcacg
TTGAAACCCACATTATCACCAGGGACAGCTTCAGTTAGCGATTCGTGATG
CATTTCTACCGATTTCACTTCTGTTGATAAGCCTGCAGGTGCAAAAGTCA
CCACCATTCCTGGCTTCATGACACCAGTTTCGACGCGACCGACGGGAACG
GTGCCAATACCTCCGATTTTGTAAACATCTTGTAATGGTAAACGGAGTGG
TTTGGAAACAGGGCGTTTGGGTGGTTGAATGGCGTCCAAAGCTTCCAATA
AAGTTTTGCCACTTTCTTTAAATGGTTTCTTCTCTTCTGTTGTTCCTTCA
GTTGTCCAACCTTTATACCAAGACATATTTGTCGAGGATTCGATCATGTT
GTCTCCATGCCAACCAGAAATGGGAACTATGGCAACGGCTTTGGGGTTGT
AACCGACTTTCTTGACGTAGACGAAGCCACGATAAGAACCGCACAGTCAG
CTTGTGATGTACCAGTGATCATATTCTTGATGAAATCTCGATGTCCTGGA
GCGTCAATGATAGTAATTTCATATTTGttggagaaaaatttccagagcGC
AATATCGATGGTGATACCGCGTTCTCTTTCTGCTTTCAATTTATCCAAAA
CCCAAGCATATTTGAAAGATCCTTTACCCATTTCTTGAgcttctttttca
aacttttcgatagCTCTTTTATCGATTCCTCCACATTTATAGATGAGATG
ACCAGTGGATGTAGATTTTCCAGAATCGACATGTCCAATGACCACGATGC
TCAAGTGAGTTTTGATCTTCTTTTCCAATGGCATATTGAGAAATCAAATG
TGTtctaaactgaaa
Run BLAST on NCBI

transcript from alignment at sc0000049:536385..538458-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004918 ID=TCONS_00004918|Name=TCONS_00004918|organism=Clytia hemisphaerica|type=transcript|length=2074bp|location=Sequence derived from alignment at sc0000049:536385..538458- (Clytia hemisphaerica)
TACTTGAGCAGTGAAGTTTTCGACGCCCTTAGCTGGATCATTTTTGCTAT
CAGAAGCAACCATACCACGTTTGATTTCTTTTACTGAAACATTTTTCACG
TTGAAACCCACATTATCACCAGGGACAGCTTCAGTTAGCGATTCGTGATG
CATTTCTACCGATTTCACTTCTGTTGATAAGCCTGCAGGTGCAAAAGTCA
CCACCATTCCTGGCTTCATGACACCAGTTTCGACGCGACCGACGGGAACG
GTGCCAATACCTCCGATTTTGTAAACATCTTGTAATGGTAAACGGAGTGG
TTTGGAAACAGGGCGTTTGGGTGGTTGAATGGCGTCCAAAGCTTCCAATA
AAGTTTTGCCACTTTCTTTAAATGGTTTCTTCTCTTCTGTTGTTCCTTCA
GTTGTCCAACCTTTATACCAAGACATATTTGTCGAGGATTCGATCATGTT
GTCTCCATGCCAACCAGAAATGGGAACTATGGCAACGGCTTTGGGGTTGT
AACCGACTTTCTTGACGTAGGTACCAATCTCTTTCGAGATTTCTTTGAAT
CTTGTTTCACTGTAGGGCGGTTCAGTGTTGTCGATCTTGTTCACGCCCAC
AATCAGCTGCTTCACGCCTGAAAAATTATAAAAAATTCAGAAATATAGCG
CATTAGTTGTCTACTTGGTTTAAGGGCTCTGACCATAGTGAATTTTTCAT
AATTGCTGTGTTTAAAATGTGTTTTCTGACTGATGTAACCAACAAAACTA
TGGCACGTTATACATTTTCTGTTAGACAAACTATTCCTGAATCTGAAAAT
TCAAAAATTGCATTGAAAAAAATTGATGAAGAAGAAAATGAAGACTTTTG
CGAGGAAGAGTATTTCAACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAA
CATTTTGAAAACTTTTTCGCAGTAGATGGTGTATCTTTAACTGAACAATA
AAAATTTGTGCGGAAAATTTTTGTAAATGCTTCTTTGTCTCGAAATCTTC
AAAATAGTGGTTTTTCATCAATTTTTCATCTGGATTTTGCTTAAAAAAAC
AGTCATAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTA
TAAAGGCAATTATTTGTTAAAAGTGTTAAGGAACCTGAAATATAACTTTT
ATGTTCAAATACCAAAATCAATTTTTGGACTATGGTCAGAGCCCTTAAGT
CAGGCTTTTAAAATGAATAACGCACTTTCCACGAAAATTACAGGGGTCTT
TACTACATACATAAATCGTTCTTTGTTGAGCTGCCTCAGAAGGGGGTATA
CATCGAATTTGTTCACTTTCAATATCAATATTCTTTTCATAAATTTTAGA
ACCACAATTCTCGTACTTTTGCCTTTCATTTTGCAATATGATTATACCAA
TAAAAATCAGCCGAGATAATTAATTGGACGTAACTCACGTAAATCACGAA
GAACAAGTAATTCAACATAGAAATGCGCTAAATTAAGCCCCCTTCCACAT
GCTTTGGAATAGCTTGAGAACTATTAAACCATTTCTAAATGAAACATTTG
CCCAAAGTTTAAGGCTACACTTTTCCTTCTACAAATTTCCCAAAAAAATC
TTACCCAGAGTGTAGGCGAGTAGCGCATGTTCTCGGGTTTGTCCATTCTT
AGATATACCAGCTTCAAATTCACCGGTAGACGAAGCCACGATAAGAACCG
CACAGTCAGCTTGTGATGTACCAGTGATCATATTCTTGATGAAATCTCGA
TGTCCTGGAGCGTCAATGATAGTAATTTCATATTTGTTGGAGAAAAATTT
CCAGAGCGCAATATCGATGGTGATACCGCGTTCTCTTTCTGCTTTCAATT
TATCCAAAACCCAAGCATATTTGAAAGATCCTTTACCCATTTCTTGAGCT
TCTTTTTCAAACTTTTCGATAGCTCTTTTATCGATTCCTCCACATTTATA
GATGAGATGACCAGTGGATGTAGATTTTCCAGAATCGACATGTCCAATGA
CCACGATGCTCAAGTGAGTTTTGATCTTCTTTTCCAATGGCATATTGAGA
AATCAAATGTGTTCTAAACTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002783XLOC_002783Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004918-exon-sc0000049-1575043694:537939..538458TCONS_00004918-exon-sc0000049-1575043694:537939..538458Clytia hemisphaericaexon
TCONS_00004918-exon-sc0000049-1575043694:536385..536779TCONS_00004918-exon-sc0000049-1575043694:536385..536779Clytia hemisphaericaexon
TCONS_00004918-exon-sc0000049-1510915933:537939..538458TCONS_00004918-exon-sc0000049-1510915933:537939..538458Clytia hemisphaericaexon
TCONS_00004918-exon-sc0000049-1510915933:536385..536779TCONS_00004918-exon-sc0000049-1510915933:536385..536779Clytia hemisphaericaexon
TCONS_00004918-exon-sc0000049-1491911889:537939..538458TCONS_00004918-exon-sc0000049-1491911889:537939..538458Clytia hemisphaericaexon
TCONS_00004918-exon-sc0000049-1491911889:536385..536779TCONS_00004918-exon-sc0000049-1491911889:536385..536779Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:536385..538458 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
440.596	438.093	470.444	396.211	4.73637	2.94595	2.12047	2.16095	0.825306	2.64313	0.298011	0	0.0221642	0.0569236	0	0.48408	0.754181	0.274332	0.265885	0.124091	1.63357	1.87315	363.258	314.024	0.158323	0.621682	27.0779	30.042	214.303	246.152
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004161EFTu-like_2
IPR009000Transl_B-barrel
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00004918 vs. Swiss-Prot (Human)
Match: EF1A1 (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 7.119e-77
Identity = 123/173 (71.10%), Postives = 137/173 (79.19%), Query Frame = -1 
Query:    1 YVKKVGYNPKAVAIVPISGWHGDNMIESSTNMSWYXXXXXXXXXXXXXXXXESGKTLLEALDAIQPPKRPVSKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGMVVTFAPAGLSTEVKSVEMHHESLTEAVPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVENFTAQV 519
            Y+KK+GYNP  VA VPISGW+GDNM+E S NM W+KGW              SG TLLEALD I PP RP  KPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFAP  ++TEVKSVEMHHE+L+EA+PGDNVGFNVKNVSVK+++RG VA DSKNDP      FTAQV
Sbjct:  177 YIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNA-----SGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQV 344

HSP 2 Score: 218.394 bits (555), Expect = 1.792e-66
Identity = 103/116 (88.79%), Postives = 111/116 (95.69%), Query Frame = -2 
Query:  522 KIKTHLSIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFFSNKYEITIIDAPGHRDFIKNMITGTSQADCAVLIVAS 869
            K KTH++IVVIGHVDSGKST+TGHLIYKCGGIDKR IEKFEKEA EMGKGSFKYAWVLDKLKAERERGITIDI+LWKF ++KY +TIIDAPGHRDFIKNMITGTSQADCAVLIVA+
Sbjct:    3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 118
The following BLAST results are available for this feature:
BLAST of TCONS_00004918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EF1A17.119e-7771.10Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
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