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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050145 ID=TCONS_00050145|Name=TCONS_00050145|organism=Clytia hemisphaerica|type=transcript|length=866bp
GTGAAGTTGGTGGAATTTTGAATGTCGATAGTATCTGTAAAATAGCAAGT
ATCAGAAAAGTCTTGTTGGCTGATTGTGTCAATGAACCTCTGGTGCATCT
TAGAGTAATATTCGTTGGAATCTCTATTCGATTCTTTTAATAGTAATAAG
CCAATACGCTTCCAATTGTAGATTTCCATGTGTTTAGCAAATACTTTTGA
TTCTAGCTCTAAGGAGTCAACTGCAGAAAAGTGATAAAGATGGTTGAAGT
CTNCATGTGTTTAGCAAAAACTTTTGATTCTAGCTCTAAGGAGTCAACTG
CAGAAAAgtgataaacatttttgaagtccCTAATTATTTGACGGTTTTCG
TTCAAAAAAATCACACTCGTATATAGTATTGCCGTcatcaattttgaaaa
taagtcaGTCATTTCTTTATCCAAGTGAACTATGTAGAACCATATTgtgc
ttttatttttaaatggaTGTCTCCCATCAACCATGCCATTATCGTAGAAT
TTGATTAAAGAAGCGTTAAATTGTGAATTTAGTTCACGATCCAATATGAA
AGTGGTTGTTAGACGAATCAGCAGTTCACGATCTTGACAAACATCCAGAC
TTACATATTCAAAGTCATGCAATGCTGAATAACGTTCTTTGGCAAGGTTT
AATGTTTGGTTAATGACATTATCGTAAAGATCAGTTCTCCTTTGAAAGTC
TGTCTGGTTCGAATTTCCATCACATTTTGAAAAGACACCAATGATTTGCT
CTGTGGTGGTGAAAGTTAATGCAACAGCTATGAACAATATTTGCACAATC
ATTCTATCCCTCtatttcagaatattttagttTACCACACTTTAAAACGT
AAAACTTAAAGCCAAA Run BLAST on NCBI protein sequence of TCONS_00050145-protein >TCONS_00050145-protein ID=TCONS_00050145-protein|Name=TCONS_00050145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MIVQILFIAVALTFTTTEQIIGVFSKCDGNSNQTDFQRRTDLYDNVINQT
LNLAKERYSALHDFEYVSLDVCQDRELLIRLTTTFILDRELNSQFNASLI
KFYDNGMVDGRHPFKNKSTIWFYIVHLDKEMTDLFSKLMTAILYTSVIFL
NENRQIIRDFKNVYHFSAVDSLELESKVFAKHMXTSTIFITFLQLTP Run BLAST on NCBI transcript from alignment at scaffold_167:194013..194878 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050145 ID=TCONS_00050145|Name=TCONS_00050145|organism=Clytia hemisphaerica|type=transcript|length=866bp|location=Sequence derived from alignment at scaffold_167:194013..194878 (Clytia hemisphaerica)
TTTGGCTTTAAGTTTTACGTTTTAAAGTGTGGTAaactaaaatattctga
aataGAGGGATAGAATGATTGTGCAAATATTGTTCATAGCTGTTGCATTA
ACTTTCACCACCACAGAGCAAATCATTGGTGTCTTTTCAAAATGTGATGG
AAATTCGAACCAGACAGACTTTCAAAGGAGAACTGATCTTTACGATAATG
TCATTAACCAAACATTAAACCTTGCCAAAGAACGTTATTCAGCATTGCAT
GACTTTGAATATGTAAGTCTGGATGTTTGTCAAGATCGTGAACTGCTGAT
TCGTCTAACAACCACTTTCATATTGGATCGTGAACTAAATTCACAATTTA
ACGCTTCTTTAATCAAATTCTACGATAATGGCATGGTTGATGGGAGACAt
ccatttaaaaataaaagcacAATATGGTTCTACATAGTTCACTTGGATAA
AGAAATGACtgacttattttcaaaattgatgACGGCAATACTATATACGA
GTGTGATTTTTTTGAACGAAAACCGTCAAATAATTAGggacttcaaaaat
gtttatcacTTTTCTGCAGTTGACTCCTTAGAGCTAGAATCAAAAGTTTT
TGCTAAACACATGNAGACTTCAACCATCTTTATCACTTTTCTGCAGTTGA
CTCCTTAGAGCTAGAATCAAAAGTATTTGCTAAACACATGGAAATCTACA
ATTGGAAGCGTATTGGCTTATTACTATTAAAAGAATCGAATAGAGATTCC
AACGAATATTACTCTAAGATGCACCAGAGGTTCATTGACACAATCAGCCA
ACAAGACTTTTCTGATACTTGCTATTTTACAGATACTATCGACATTCAAA
ATTCCACCAACTTCAC Coding sequence (CDS) from alignment at scaffold_167:194013..194878 >TCONS_00050145 ID=TCONS_00050145|Name=TCONS_00050145|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_167:194013..194878 (Clytia hemisphaerica)
ATGATTGTGCAAATATTGTTCATAGCTGTTGCATTAACTTTCACCACCAC
AGAGCAAATCATTGGTGTCTTTTCAAAATGTGATGGAAATTCGAACCAGA
CAGACTTTCAAAGGAGAACTGATCTTTACGATAATGTCATTAACCAAACA
TTAAACCTTGCCAAAGAACGTTATTCAGCATTGCATGACTTTGAATATGT
AAGTCTGGATGTTTGTCAAGATCGTGAACTGCTGATTCGTCTAACAACCA
CTTTCATATTGGATCGTGAACTAAATTCACAATTTAACGCTTCTTTAATC
AAATTCTACGATAATGGCATGGTTGATGGGAGACAtccatttaaaaataa
aagcacAATATGGTTCTACATAGTTCACTTGGATAAAGAAATGACtgact
tattttcaaaattgatgACGGCAATACTATATACGAGTGTGATTTTTTTG
AACGAAAACCGTCAAATAATTAGggacttcaaaaatgtttatcacTTTTC
TGCAGTTGACTCCTTAGAGCTAGAATCAAAAGTTTTTGCTAAACACATGN
AGACTTCAACCATCTTTATCACTTTTCTGCAGTTGACTCCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050145-exon-scaffold_167-1491911889:194013..194878 | TCONS_00050145-exon-scaffold_167-1491911889:194013..194878 | Clytia hemisphaerica | exon |
| TCONS_00050145-exon-scaffold_167-1510915933:194013..194878 | TCONS_00050145-exon-scaffold_167-1510915933:194013..194878 | Clytia hemisphaerica | exon |
| TCONS_00050145-exon-scaffold_167-1575043694:194013..194878 | TCONS_00050145-exon-scaffold_167-1575043694:194013..194878 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:194013..194878 . |
Blast
The following BLAST results are available for this feature:
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