TCONS_00050024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050024
Unique NameTCONS_00050024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050024 ID=TCONS_00050024|Name=TCONS_00050024|organism=Clytia hemisphaerica|type=transcript|length=663bp
ATCAAAATGACACGTGATTTGATGCCGCAGTTCATTCGCTTGCATGAGCA
GAGTTACCAACAATCTTCGGAAGATGAGGAGCGAGATTTCTTGATGGAAG
TTGATGAACCTTTCGTTGATCACCACCTTCCTGATGATGTTGAAGACTTC
CTTCTTATGATCACAGAGCTACACCAAAGAGTGGAGCAAATACATGTCTT
GTTAGCTGACCTAAAGAAACATCAAGGAGAAATCATCTCAGAAATTCACA
TGAATAAAAGACTTCACGAAGAACATGATATTTTGGTCAGTGAAATCAAG
AAAGAATCTTCAAGTGTCAACGAACAAATTAAACGTCTAAAGGTGGTTGT
GGAAGGAGAGAAGAGAGATGGCTACATCACAACAGAAGGGAAAATGAAGA
GAGATCAGGTCAATGTGTTGGTCTTGATCTTCCAAGAAGTGATGGAGGAA
TTCAATCGAACGCAAATCGAACATCGCGATCATTGTAAAAGTAGAATCAA
ACGACAGTTTGAAATATGTGGCCATGACGTAGATGGAGAAGATATCGAAG
AAATGCTGGAAAATAATGAAGTCAATGTTTTCACCAAGCATCTGGGTATC
GATGATCTTGCTAAAACACAAAATGCTTTGCGAGAAGTTGAAAATAGACA
CGCTGATATTTTG
Run BLAST on NCBI

protein sequence of TCONS_00050024-protein

>TCONS_00050024-protein ID=TCONS_00050024-protein|Name=TCONS_00050024-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
IKMTRDLMPQFIRLHEQSYQQSSEDEERDFLMEVDEPFVDHHLPDDVEDF
LLMITELHQRVEQIHVLLADLKKHQGEIISEIHMNKRLHEEHDILVSEIK
KESSSVNEQIKRLKVVVEGEKRDGYITTEGKMKRDQVNVLVLIFQEVMEE
FNRTQIEHRDHCKSRIKRQFEICGHDVDGEDIEEMLENNEVNVFTKHLGI
DDLAKTQNALREVENRHADIL
Run BLAST on NCBI

transcript from alignment at scaffold_167:216426..227824-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050024 ID=TCONS_00050024|Name=TCONS_00050024|organism=Clytia hemisphaerica|type=transcript|length=11399bp|location=Sequence derived from alignment at scaffold_167:216426..227824- (Clytia hemisphaerica)
ATCAAAATGACACGTGATTTGATGCCGCAGTTCATTCGCTTGCATGAGCA
GGTAGTTACAATTTAGTCAACAAAGATGGGAAACGAAGTATTGGGGAATC
TCGATAATTAAAAACCGGGATTTGAATATCTACTGATTGAACAGGGAGTT
TTAATTTTACTTCAATAATTCTAACCCCCTTTTGATAATGAGTTTCGAGG
ATTTTACTTTGTAAAACAATTTCTGTCTCTTTCAAAGCTATTTGATGTCC
CAGACTTTTGTTATTAAAGCTGCACTAATTGATTCGATTTACAAGGGAAT
TTGATTTTCATTAAATACAGTGCCGTAGCAACTGGGGGGGCAAGGGGGGG
CTATGCCCACCCCAATAATTTTTTCAAAAATGGCTTTTTTGCAAAATGCA
AAATTTTTCTTTTTTAATTTGTCATAACTGTCTTTTATGTGCATGTTTTG
AGTGTATATTTAAGCAATCTAGAGCTCAAATTTTCAAAATCCCCCCCCCC
TCGGGCCAAACTATGGTTTGCGCTTGCGGTGTCACTAAACTTCAGCCCCC
AATATGAAAATGCTTCCTACGGCACTGTTAAATAAGGGAACGTATCGATA
GTAGTAGTCTGGGAATCAAAAGAAAAGAAACAAAAGATACCTCACCTCAC
TAAGTTCTAAGATTATAGAGCTTGGTGCAGATAGATTAGTCTGATACAGA
ATGTTATAAACAGTCTGTGTGTTAACCCTTGTTGACAGACTTTACGAACT
CTGGAAACCCAGGCAAACACACATAATCAGTTACCATAAAAACTCTTTCA
CAAGCTCTAAAGACTTTCAAAACTACTAAAAACCACATCAAAACATCAGC
CACATGTGTTTAGACTTCCAGTCAACAGCCATTTTGTTTCTAAATGAATC
TATGTTTTCATTTTCATTTGTTTTACTTTTTTTTGCAGAGACAGTTTTTT
CCCTAAATTGTGTGCGTGCATCGAAATTATCATAATGCGCGCGAAAGTAC
TGCTAAGTAATACGCCGAAAGCTGGCCAATCAGGCCGAACCTGCATTGTA
GGGAAAAATCTCCCTACAGGCGAGTTACCTGCGTCAAGCGTTAAACAAGC
AGCAAAAACATCATAAACTAGACTTTGAACAAACTTGAACAAACGCTTGG
ATTCCCAGGCTACGATAGTAGTAGATCGTCAAATTAGAAATCTCCAATTG
TAATAAGAAATGAAGCATGGAGGTATAAAGAAAAACAGGAGCTGAATTTG
TCGGTAATTGGTCGTTAAAGTCTTTTGATTGCTTTAATGAAATATATCAA
AAGAAAATACTAGCCTCTGCTGCCCGCCCGCAAACTTTTTTTCCGTCAGC
GAACGCAGACCTGATTTAGCGGCCGAAGACCTGAATTAACGGCCGAAGAC
CTGATTCTGCACGGCCGAAGACCTGATTTAACAGCCGAAGACCTGATTCT
GCACGACCGAAGACCTGATTTAGCAAGTCACCGGCCGAATACCTGATAGA
TAAGTTAGGGTCAGTTAGACTAGCTTGAACCACTCGGTAAGGCATCAGTT
GCGATGGACCAGTGATTAGTGCAGTGGTATTGAAGACGAAAGATGGGTAG
TTCGAGACGAGTTATTGGCATTAATTTTCATTCTTTTTAGCTTAAAATAT
TTTAACTTAATTTGTTTTCAATACTATTTCCCATTGAAACATCATATAAA
AATCTTGATTGAATTTATAAAAAAGATTTATAACAAATTTCCACAATTCA
TTTTCCCCAGGTCTTCGGCCGTTAACAAGGGTATTCGGCTGCAGCATCAA
GTCTTCGGTTTTTAATTCAGGTCTTCGGACCCTAAACATTCTTACTATCA
GTATTGAAGATTTCGAGCCTTATAATATACGAAAATTAAATAAAACTTCG
TCCACGAAACAAGTATATTCAATTTCGTTGTCTGTTAAATTTTGTTTTTA
AAACATATTTTTTCAAGCCAGAAAATGAAAAGTTCTTTAAAAACACACAC
TATTTCAGACTTAATTTGTAGACATAAAAAGAAATTTGGAGGAAAGTATC
GAGCAATATAGTTCACCTTAAAGAAAACATTGATCGAAAAATCTTGTCAT
TTGACGAAGGATTGCCAAGTTTACAGGCCTTTTTGGCCCCCCCCGGATTT
CTCATACTCAGCTTTATTTTTAGAATTTTGTTAAAAATCAATAAGAATTA
ATGCTGCCCTGTGGTGAATCTTCATTATACTTTGTTTAGAGTTACCAACA
ATCTTCGGAAGATGAGGAGCGAGATTTCTTGATGGAAGTTGATGAACCTT
TCGTTGATCACCACCTTCCTGATGATGTTGAAGACTTCCTTCTTATGGTA
AGTTTTCCATAAAATTACCTTAAAAGTTTCACGTAAAACTTATAGTCATA
CACGTTTTTTTAATATAAGAACATCCAAAATTTTGTTTAAGCCTAAAAAT
GTTCTTATTAACATGTTTTTATTTTGAGCTTTTTTTATTTTTGACCATTT
TCCTAAGAAATAGGATGTTTTTGAGTCTACAAAGCCTATCTTATTAACTT
GTTCTTAACATTTTGGCCATCGAAGTCTTATGTTTTTATATATAGTTTGT
TTTGTTCTTATAAAAAAAACGTGTATACACCTATTCTAGCCCGGAACGAT
TGACTTTTCTGCCAGTAAAGAATTCGTAGAGAAAACAAAACTTAGACTTT
TTCAAAACAGTTTAGTTTTTGAACCATTTTGGTTACATTTTCAGATCACA
GAGCTACACCAAAGAGTGGAGCAAATACATGTCTTGTTAGCTGACCTAAA
GAAACATCAAGGAGAAATCATCTCAGAAATTCACATGAATAAAAGTAAAC
ATTTCTTTTATAAGAACGTCCAATATTTTTGGATGTTCTTAACTTTTTGA
ATTTCAAGCTTAAAAATGTTCTTAAAATATTCTTATTTTCATCATGTTCT
GAGTACTTTTGTTAAGTGTTTTAAGAGATTGGGTGTTAAGAGACCGCAAA
GCCTTAAGTTAACTTGTTCTTAATATTTTTGACCATTGAAGTCTTATGTC
CTTATAGACTGTAGTTTGTTCTTATAAAAAAAATGTATTATTGTATTCAG
TATTCAGTTTTAACGCTCGCTGATACTTTGTATGGTTTGTGTACCTGAAA
TCTTACCAAGGACTCGGTTTCTCTTTGACCGATACTCTTAGGTTCCAAAT
AAACGGCCCCCGCTTGTTAATCTTTCTAAAATTTTCCAACCCCCCGGACC
TTATTAGGACCCCCCCCTCGCTTATTAATTTTTAAGAATTTTTCAGCTTT
CAAAGAGAAGGTCCCTTATTCTGCTCTAAATAGCCTGTTTTTAGCCTATA
TTTACCCTATTTTAGGTTTGTCCCAAGTATAATTTCCCACTCCCCGGCAA
TTAGGTCCCCCCGTTTATTAAAATTTTGAAATTTTTCAACCCCCCCCGTT
TATCTGGAACCTAAGAGTACCTAGCCACTTGAAAGGGGTGTAATTGGATT
GGTACAGGGAAATGAATGACACACCCTTCATTGAGACGAACGCCTATTAG
ATACATAGGTGGAATGGTCGGCTTTAACTCTCTTTATAGCCTTTATAAAT
GCTTTATAAAGGCTTACTACTAATTTGATTGTCACATGTTGTATTATTGT
TTATGGTTCGTTCATTTAACAGGACTTCACGAAGAACATGATATTTTGGT
CAGTGAAATCAAGAAAGAATCTTCAAGTGTCAACGAACAAATTAAACGTA
AGAGAAAGGGGATCCAGGGAATGTTTTTACTTTTTTAACGGAGTCTGGCT
TGAGTCGGGCTTTGACGACCAAGCCTCGTCTACCTATATTGATAAGCTTG
TTTGAAGGAAACTCTGAAATTCCCATGGATCTTAATTTTTAAGGGGTTGA
AAGTTATTCTGAAATTTCCATAGGACTATTTTAGTTTGTCTACTCCTACT
TTTTTTTGTTATGAATTGTAGATTATAATTTTTCCCAAGAGGGTATTTGC
ACAATTTCAAGATTTTTGCTTGATTAACTTGCATCCTTGAATGGATATTA
AATGGAACTGCTCATCAATATCCTTTTGTTTATTGCATTGCTATGCTTAC
ATTTGACCAAACCACTCTTCGGAACAAGCATCATACTGTCATGTAATTAA
GAAAAGGACTGATAGTTTTTATCATAGACATAAACAGATGTTTGCTTAAA
GACCTTTGCATCGTAAATCCAGCCTTAAGTTGACAAGTAAAGAAAATATC
ACTTGCTATAGTTCATTTTGTTTGAATGTCCAATTTAGAAAGAACGTAAT
CTTTGTCATAAAGGTCATTCTTAATTTAATGTGATATTTCGGCACCGCAA
TTTATCCTAGCTTAGTAGGGCAGTGTATTTTAAAAGGGCCTTGTATCGAC
ACTGTGATGTCTGCTTACTTTATTGAGTAACAAAATTTATAAAGCTATGT
AGAACGAGCGAAAAATTTCTCGTCGTTACACGTTTTTTTATAAGAAAATC
CAAATTTTTTGAAGCCTTTTCAAGTTTTAAGTCTAAAAATGTTCTTAACA
TGTTCTTATTTTCGCCGTTTTTTGAGTATTTTTCCTAAGAAATTGGGGTT
TTTTGAGCCCACAAAGCCTTAATGTTCTTAACTTGTTCTTAACATTTTGG
CCATCAAAGCCTTATGTTCTTATATAGTTTGTTGTTAAAAAACGTATTTT
CTGATATTTATCGTCAAAACATACACTCGACATTCCTATAGCTCACCGGA
TGGTCATAAAACTGAGGGAAGGGAAAATAAACATTTAGAAACCGCACGTT
GCAACATGTCACGAGTTAATTACTGTTAAATGTCGTTCATGTTATTGAGC
TTATTACAAACAAAATTTTGTTGTTACTATATAGAGTTGTGTAAGAAGAA
AGTATCTGTTCGGAACTCAAAAGTTATGCTTTCTGGAAAGATTCTGTTAT
ATTTGGTAGCCGTAGATACGTTATCGAGTGTCGATGGTCTAACCAGCAGA
ATACCAATGAAAAAGTTGTTAAACTCTGGACATAATATTGTCAACACTGA
ACGTTTTTATTTGGTAGCTTTTGTCCCAATCAGAATGAAAAGATTTAATC
GTAGTGGTTTTGTATGGCGTGAAGTTTTAAAATACGCTTATTATGAAATG
ATTGAAACGTTCGAAAAAGAGGGGTTGTATTTAAACCTTGATCTGCTTAT
TCTGGACTCAGAGAATCGTTTAGACATTACAACCAGTCATATCATGGATG
TATTATCCAAACAGATGCGTGATTTTCATTCTCCATGTTGTTCTGCCGGA
GCTTTCAACGACCACATTATTGGCTTCATAGGGCCGGCATCTTCATCGAC
GTCTAACCATGTTTTAAACTTATTAGCGTTTGACCACTACCCTGTTATTA
GTTACTCAGCAACAAGTGTCCGTTTTCACGACAAAAAAGAGTACCCAAAT
TTTATGAGAACATTACCGTCAGATGACGTACAAGTCAAACTAATATTGGA
TATTTTATTACGTTACAATTGGACTTACGTTGCTGTTATTGCGCAAGATG
ACGAATACGGACGTACGGGAATGGACGAACTGAAAAGGTTATTTTCAGAA
CATAGAATATGTACAGCTGTAGAAAGAACCATTGCTATTCATAATAAGAC
TCTAATGGTTAAAGAGACTAAAGAAGTCTTGAAGTTGATTCAAAATGATC
TATTGGCCAACGTCGTCATTTTATGGATGGACGGCGTCAAACTACCGACT
TTCTTTGAAACTGCAGAAAAAATAAAGTTCTATAATAAAACTTTCATACT
TTCTGAGTCAGCCAATGAAACTCCAAGTATTCTTAGTTACGACTCAAATA
TCATCCGTGGTTTGTTAAGTATCGTCCCTAAAAGTGGTCAATACAATGCT
TTTGAAGATTATTTTCGACGAATGATGTATAGGAAAGATGCAAAAGATGA
TTGTTTGTTGAGATCATTCTTTGAAGAAAGTGTTGGGATAGACCCTACTT
CTGATGCATCGATTAACGATTACTGGGGAGATCTACCAATGACCAAGAAT
GGGTTTGTTTATGACTCATTACATGCTTATGGGCAAGCAGTAAAAACATT
CGTTAACAAACACAACGGAACTTGTAATCACACACATACTAATGTTTGTC
TTAGAAGCATCACAAGTAATCGTTCAGATTTTATTCAAAATTATTTAAAA
AAAGTTGCGTTTATCAACCTACATAATGAGAAAGTTTCCTTCGATTCTAA
AGGGAATGTCAACTGTACACAATTTTGGATATCGACCATTCAACCTTCCA
CAAAGCACGAGGGATCTTTGTTTTGGAAGCGAATAGGCAACTGGAGTAAC
GATCAAGGTTTAGAAATGAATTTTGAAAATTTCACATGGAATAATGGTCT
AACAATACCCCCGTCTTCGAAATGTGGAGCTAGGTGTGAACCTGGGTATG
AGCATTCGAATGGATCCACCGAGTGCTGTTGGACATGTATACCGTGCCAA
GGAAACACAATCNAATGGCTCCACCGAGTGTTGTTGGACATGTATACCGT
GCCAGGGAAACACAATTAAACAAAACGTTGGGCATGGTTTGTGTATGACG
TGCCAACCTGGTTCGTACACAAACAAACAGCACACCAAATGCGTTATATA
TCTAGAGAAAAGATTCGATTTCAAGAGCAGTATGGGAATCATTTTATTAT
CCTTTTCGATCACCAATTTGATTGTCATCATATCTTTCACCATCGTTTTT
ATCGTTTACCGGAAAACCCCCGTCGTTTTATCCTCGCAATTATCAATCAG
TCTAGCTNTTATCCTTTTCGACCACCAATTTGATTGTCATCATATCTTTC
ACCATCGTTTTTATCGTTTACCGGAAAACCCCCGTCGTTTTATCCTCGCA
ACTATCAATCAGTCTAGCTCAGTTTTTCTTTTTGGCACTCTTGAATCTAA
TAGTACCGTTAAGTATCAATAAACTAATGGGTATCAAATGTTTAGTATAT
GGAACCCTAATACCAATTATTGGTACATTAGCAATTTTACCGACCGTCTT
AAAAACGCAGAGATTGAACAGGATTTTTATGGCTAAACAAAGAATACACC
ATCACCATTACTTTCATACGAAGGACCTGCGTTTGTCAGTTTGTTTGTTA
CTTGCTCAAGTTTTTGTTACCGCGTTTTACAGTATTTTCAACAGTTATGA
TCAGCCAGTCACTAAGGTTGACCCTGAAACGCAAACATTTACAATCAACT
GTAATTTTAATTGGTTTATTTACATCCAATTCGGTTTCGTTTTCACCATT
GTTTTGTTCTGTGGGATTTCCGCGTTTCGAGCGCGGGTATTACCTCACAA
TTATAATGAAACGCGGATGATCGCGTATTCAATGTTCATCACGTGTGTAA
TCCTCGTTTTTACCGTACCCTTGTTCGTGAGTATCGGCTTGGAATCGCAG
ACCCTTATCCTCCTATGTGCACTTCTCTTGGTAGACTGTAACATTACTCT
TTGTATGTATTCACCTAAAGTGTGGGTCATCATTTTTCGTCCGAACTTAA
ACACGACCAAATATTTCACAATATCGAGAATGAAGCATGTAGAAGAGAGC
GTTGCTAGAGAATATCGGAAATCGCACCTTCTAGTTTCTCAAACATCTAG
CACTGAGAATAGTCCTTCGCGTCACTCTTGTCGGAGCTCAATGTTGGTTA
AGACAAATGAGCCTCTTTTGAAATAAAAGTGATTAATTAAGGATATATAT
TTTTTAATTTTAATAATAGATCTATAATGAAAATAATAAAGAAACATAAC
AAAAAATCGAAAATTTCACACTCCAGCTAAAATGCGTGCCCTTTCTAACG
ATCACCATTTACAATTCACGTTAAGATGTAACCGCTTGACATGACCCACA
CGGAGGCCATCAAGGAGCGTTTAAATAAGGTCAATTTTGGTCTTTAACCT
ACAATCCCCAACAAATATCTTGAGACAGAAGATTTCTAGACATTTTTGGA
AGATAAAAATCCGTCACCCGGACCCCATTATCAGTGTTGAGTCCGGAAAT
GGCCGAGAACTCAACGCTGACAGTGGGGTCTCAAATATAAATTGGGGGAT
TGTAGTTAAGCAAGCAAAATTCTTTAAGTTCATTTACACTTTCTCGTTTA
AATCTGTAAATGCCTACCTTAAGTTGATAAATTTTGGCGGGGATTTAATT
TGGCGATAGATCAAGTTCGTAAAATTTAGCGGGGATTTAATTTGGCGAAT
TGGAAATTTTGTCACACTGAAATGGGTGAACATTACTCAAAAATGTACTA
AAAAGTTGTGATTTTTCACATAATTCTCTTTTTGTTAAATTTGGCGGGGA
TTTAATTTGGAGAATTGCCGAATTTGGAAATTTTGCCGAGGATTTAATTT
GGCAAATTTTGGCAAAATTCGCAAAATTCGCCAAATTTAATCCCCGCCAA
AATTTATTCACTTAAGGTATTCTCGTTTCCAAGCCATTTTTAAAATAGTC
TCTTAAGGTCTTTCTGTGAAAATTTATTTTGAAATCACTTCTACTTCATC
TCTGATTTTTACCTTTAAAGCTAATTATATGATAGTTATAAATTTGTATA
TTTTCTTTGTAGGTCTAAAGGTGGTTGTGGAAGGAGAGAAGAGAGATGGC
TACATCACAACAGAAGGGAAAATGAAGAGAGATCAGGTGACTACTCCCAA
CAGAATCCTATTTCAAACACCCTCAATCATCAGTTGAAACCATAGATTTG
TAAAGCCCGATGGGCTAGATGTCAAGCTTTTGCTAAAAAGTGTGCCGTAT
TTAGGTAGAAAATCCTACCTAAGTCACGTGACACTACAATAGAATTTCAG
CGCTTGACCAATCAGAAGCTTTGCGGACTTTCGAAAACAATAGCAGTAAT
ATTTTTTCCGATATTCACTTTTTTTTTGCTTTGAAGAGCTTAAAGCACGA
CATCTAGAACGATCCCGAAGGCTTTACAAATCAGAATTCTTTACACGATA
GTCTTTCCAATGTGAATTCTAATTTTTCTATAGCTTAAGCCGTATCAAAT
GTTTTCTAAATAGAGCATTTAAGTCACGACGGAACTTAGACAGCATAGTC
TTAGTCTTATCGGTATTTTTGGTTCTTGGTGGATTAAAGTTCGACGTAAA
AATAGGGGGACTGTGTGGTCTGAGAAGGGCGACGGGAGTACAACAAAAAT
GTGCCTGTTTGGAACCATCTTTGCAGGTAGTTCAAACTAAAAATTGAATA
CAAAAGAAAACTATCAAAACGGATGAAATGCTAGGCTATGAACATAGACT
ACTGAATGCTAGAAAATTGGACTATAAACATAGAAAATAATCATTCAGTC
AAAAGATATCAAACAAATAAAAGTTATAAGCTGATTGACGTCTAAAAACG
CTGTTTTCTGCTGGTTTCTGCTGTTTTTTGGGGTCAACCACTTGTTAACT
TTGTATCATAACTTTATATTGAATAAATATTTTAGTGAAATTTTTTCACA
GTGATGACCTCCTAAGATCAAAGAATCTCTCTAGTGAAAATGAAAGTCAT
AGCACTTTTCTACAAGATCTTCATTTTTTTCTTCTTTATTTTCATCTTCG
TTTTTAGAATTTTTTTAAAGACTTTTTTATTTCAAATTTTTCCACTCACA
AATATCTCTCCAACGATACCAAATTTATAAAGATGGAAGAATTCCTTCAA
AAGTTATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAACAGACTTC
AATTAATTAAAATTCACTCTAACTGTTCCTTCTTTAACTGCCTTCGCAGG
TCAATGTGTTGGTCTTGATCTTCCAAGAAGTGATGGAGGAATTCAATCGA
ACGCAAATCGAACATCGCGATCATTGTAAAAGTAGAATCAAACGACAGTT
TGAAATATGTGAGTTATTTTTGTTGTGATATGCTTCTTTAATCTTGAATT
TCTTAAAGCATTCATATCATTCATACCTTTGACAGGTGTTTGAAGATTTA
ATGATCATGGCTCTTGGCAGCAGGTTTTAGGTGCCCCCTAAGAATTCAGG
TGACCCCTAAGATTTAGGTAACCCCTGGTTGCCAAATATTTTAGTTGACC
CCTAAGCCGTGCTATTGTACAAATTTTTAGAAATAGCTCAGCGCACACAT
AGTTTTCTCAGAAACACGATTTTTAGACAGAAGACATTCCGTAGTGAAGT
TTATGATGAAAGAAAAACAAGTTCAGAAAAAAATCACCAAACATAGAATC
TAGCCCCCAGGTCCATCTGAAAAAATTTAGGTGACCCCTAACATGGTTAG
TCCCCCCTGTTCCAGCCATGATGATACTTTAAAGTGGAGAAAACATCCTC
CACATTGCCCGATGATGGGAGAAGAATCTTTCGAAACGTAGCCAAACGTA
AATCTTGTGACATTATGAATACCACACTGGGTCGATAAGTTTAAACTTAT
TTAGTCCCACAAGTATCTTTGGCTTTGGAAAAATGAAAACAGCTGAAATT
CGAAACATTTGAATCCACATTCATATATAAACGTCATTAATATATCAAGT
CCACTACTCAGGATATTGTTGTCAATCTAATTTTATGATCCCTATCAACA
CTCCTATCTCACATCCCCGATAAAAATGTTCCTACAGTGGGAATGGTTTT
GGAGATTCATATTAAATATGAAATTGTGATAAACTCAAAGTCAATTTCTC
AATGTGGCTGAAATTGTAGGGTGTTTTTTCCCACCGCCACCGGAGACAAA
ATTTTAGCCAAATTTTTAAGTGATTCGTCTTTTATTCTGTGTACCGTTTG
ACAGGTGGCCATGACGTAGATGGAGAAGATATCGAAGAAATGCTGGAAAA
TAATGAAGTCAATGTTTTCACCAAGCATCTGGTATATACATAAACAACAT
TTTCGTAAAGACGACTGAATGTCGTGTTGAATAATTAAAAGCTCCATTAA
AGAAATATCCTAATAATGCATAATTAGTGCATACTAAATATTTTCTTGCC
ATTGTTTCGATGCTGACGCTTTTTCAATAATTCAACATGACATCGGTCTT
AAGAAAAAGCCTGTTGATTTTCTCTGTATTTATTTTTGTTCCTTCTTTTT
AGGTGTTATTGGTTAAATTCTTCTCTCTGACTCAAAAAGAATGTGTTTGC
TTTCTTACGACTCTTACAACGTCGAGAGATCGAGAGCAAAGTCAACAAGT
GCCTTGTCTTTTCACTAACTATAAATCAGGAAAATTGAAATGAAAACATA
ATTTTTAGGTTAGAATATTGAGAAGGTATTTGGTGAACAATGAAAGAGAT
TACAATAATAAATTATTGTATTTATGACAGGGTATCGATGATCTTGCTAA
AACACAAAATGCTTTGCGAGAAGTTGAAAATAGACACGCTGATATTTTG

Coding sequence (CDS) from alignment at scaffold_167:216426..227824-

>TCONS_00050024 ID=TCONS_00050024|Name=TCONS_00050024|organism=Clytia hemisphaerica|type=CDS|length=5304bp|location=Sequence derived from alignment at scaffold_167:216426..227824- (Clytia hemisphaerica)
GGTATCGATGATCTTGCTAAAACACAAAATGCTTTGCGAGAAGTTGAAAA
TAGACACGCTGATATTTTGGTGGCCATGACGTAGATGGAGAAGATATCGA
AGAAATGCTGGAAAATAATGAAGTCAATGTTTTCACCAAGCATCTGGTCA
ATGTGTTGGTCTTGATCTTCCAAGAAGTGATGGAGGAATTCAATCGAACG
CAAATCGAACATCGCGATCATTGTAAAAGTAGAATCAAACGACAGTTTGA
AATATGTCTAAAGGTGGTTGTGGAAGGAGAGAAGAGAGATGGCTACATCA
CAACAGAAGGGAAAATGAAGAGAGATCAGGACTTCACGAAGAACATGATA
TTTTGGTCAGTGAAATCAAGAAAGAATCTTCAAGTGTCAACGAACAAATT
AAACATCACAGAGCTACACCAAAGAGTGGAGCAAATACATGTCTTGTTAG
CTGACCTAAAGAAACATCAAGGAGAAATCATCTCAGAAATTCACATGAAT
AAAAAGTTACCAACAATCTTCGGAAGATGAGGAGCGAGATTTCTTGATGG
AAGTTGATGAACCTTTCGTTGATCACCACCTTCCTGATGATGTTGAAGAC
TTCCTTCTTATGATCAAAATGACACGTGATTTGATGCCGCAGTTCATTCG
CTTGCATGAGCAGGGTATCGATGATCTTGCTAAAACACAAAATGCTTTGC
GAGAAGTTGAAAATAGACACGCTGATATTTTGGTGGCCATGACGTAGATG
GAGAAGATATCGAAGAAATGCTGGAAAATAATGAAGTCAATGTTTTCACC
AAGCATCTGGTCAATGTGTTGGTCTTGATCTTCCAAGAAGTGATGGAGGA
ATTCAATCGAACGCAAATCGAACATCGCGATCATTGTAAAAGTAGAATCA
AACGACAGTTTGAAATATGTCTAAAGGTGGTTGTGGAAGGAGAGAAGAGA
GATGGCTACATCACAACAGAAGGGAAAATGAAGAGAGATCAGGACTTCAC
GAAGAACATGATATTTTGGTCAGTGAAATCAAGAAAGAATCTTCAAGTGT
CAACGAACAAATTAAACATCACAGAGCTACACCAAAGAGTGGAGCAAATA
CATGTCTTGTTAGCTGACCTAAAGAAACATCAAGGAGAAATCATCTCAGA
AATTCACATGAATAAAAAGTTACCAACAATCTTCGGAAGATGAGGAGCGA
GATTTCTTGATGGAAGTTGATGAACCTTTCGTTGATCACCACCTTCCTGA
TGATGTTGAAGACTTCCTTCTTATGATCAAAATGACACGTGATTTGATGC
CGCAGTTCATTCGCTTGCATGAGCAGGGTATCGATGATCTTGCTAAAACA
CAAAATGCTTTGCGAGAAGTTGAAAATAGACACGCTGATATTTTGGTGGC
CATGACGTAGATGGAGAAGATATCGAAGAAATGCTGGAAAATAATGAAGT
CAATGTTTTCACCAAGCATCTGGTCAATGTGTTGGTCTTGATCTTCCAAG
AAGTGATGGAGGAATTCAATCGAACGCAAATCGAACATCGCGATCATTGT
AAAAGTAGAATCAAACGACAGTTTGAAATATGTCTAAAGGTGGTTGTGGA
AGGAGAGAAGAGAGATGGCTACATCACAACAGAAGGGAAAATGAAGAGAG
ATCAGGACTTCACGAAGAACATGATATTTTGGTCAGTGAAATCAAGAAAG
AATCTTCAAGTGTCAACGAACAAATTAAACATCACAGAGCTACACCAAAG
AGTGGAGCAAATACATGTCTTGTTAGCTGACCTAAAGAAACATCAAGGAG
AAATCATCTCAGAAATTCACATGAATAAAAAGTTACCAACAATCTTCGGA
AGATGAGGAGCGAGATTTCTTGATGGAAGTTGATGAACCTTTCGTTGATC
ACCACCTTCCTGATGATGTTGAAGACTTCCTTCTTATGATCAAAATGACA
CGTGATTTGATGCCGCAGTTCATTCGCTTGCATGAGCAGGGTATCGATGA
TCTTGCTAAAACACAAAATGCTTTGCGAGAAGTTGAAAATAGACACGCTG
ATATTTTGGTGGCCATGACGTAGATGGAGAAGATATCGAAGAAATGCTGG
AAAATAATGAAGTCAATGTTTTCACCAAGCATCTGGTCAATGTGTTGGTC
TTGATCTTCCAAGAAGTGATGGAGGAATTCAATCGAACGCAAATCGAACA
TCGCGATCATTGTAAAAGTAGAATCAAACGACAGTTTGAAATATGTCTAA
AGGTGGTTGTGGAAGGAGAGAAGAGAGATGGCTACATCACAACAGAAGGG
AAAATGAAGAGAGATCAGGACTTCACGAAGAACATGATATTTTGGTCAGT
GAAATCAAGAAAGAATCTTCAAGTGTCAACGAACAAATTAAACATCACAG
AGCTACACCAAAGAGTGGAGCAAATACATGTCTTGTTAGCTGACCTAAAG
AAACATCAAGGAGAAATCATCTCAGAAATTCACATGAATAAAAAGTTACC
AACAATCTTCGGAAGATGAGGAGCGAGATTTCTTGATGGAAGTTGATGAA
CCTTTCGTTGATCACCACCTTCCTGATGATGTTGAAGACTTCCTTCTTAT
GATCAAAATGACACGTGATTTGATGCCGCAGTTCATTCGCTTGCATGAGC
AGGGTATCGATGATCTTGCTAAAACACAAAATGCTTTGCGAGAAGTTGAA
AATAGACACGCTGATATTTTGGTGGCCATGACGTAGATGGAGAAGATATC
GAAGAAATGCTGGAAAATAATGAAGTCAATGTTTTCACCAAGCATCTGGT
CAATGTGTTGGTCTTGATCTTCCAAGAAGTGATGGAGGAATTCAATCGAA
CGCAAATCGAACATCGCGATCATTGTAAAAGTAGAATCAAACGACAGTTT
GAAATATGTCTAAAGGTGGTTGTGGAAGGAGAGAAGAGAGATGGCTACAT
CACAACAGAAGGGAAAATGAAGAGAGATCAGGACTTCACGAAGAACATGA
TATTTTGGTCAGTGAAATCAAGAAAGAATCTTCAAGTGTCAACGAACAAA
TTAAACATCACAGAGCTACACCAAAGAGTGGAGCAAATACATGTCTTGTT
AGCTGACCTAAAGAAACATCAAGGAGAAATCATCTCAGAAATTCACATGA
ATAAAAAGTTACCAACAATCTTCGGAAGATGAGGAGCGAGATTTCTTGAT
GGAAGTTGATGAACCTTTCGTTGATCACCACCTTCCTGATGATGTTGAAG
ACTTCCTTCTTATGATCAAAATGACACGTGATTTGATGCCGCAGTTCATT
CGCTTGCATGAGCAGGGTATCGATGATCTTGCTAAAACACAAAATGCTTT
GCGAGAAGTTGAAAATAGACACGCTGATATTTTGGTGGCCATGACGTAGA
TGGAGAAGATATCGAAGAAATGCTGGAAAATAATGAAGTCAATGTTTTCA
CCAAGCATCTGGTCAATGTGTTGGTCTTGATCTTCCAAGAAGTGATGGAG
GAATTCAATCGAACGCAAATCGAACATCGCGATCATTGTAAAAGTAGAAT
CAAACGACAGTTTGAAATATGTCTAAAGGTGGTTGTGGAAGGAGAGAAGA
GAGATGGCTACATCACAACAGAAGGGAAAATGAAGAGAGATCAGGACTTC
ACGAAGAACATGATATTTTGGTCAGTGAAATCAAGAAAGAATCTTCAAGT
GTCAACGAACAAATTAAACATCACAGAGCTACACCAAAGAGTGGAGCAAA
TACATGTCTTGTTAGCTGACCTAAAGAAACATCAAGGAGAAATCATCTCA
GAAATTCACATGAATAAAAAGTTACCAACAATCTTCGGAAGATGAGGAGC
GAGATTTCTTGATGGAAGTTGATGAACCTTTCGTTGATCACCACCTTCCT
GATGATGTTGAAGACTTCCTTCTTATGATCAAAATGACACGTGATTTGAT
GCCGCAGTTCATTCGCTTGCATGAGCAGGGTATCGATGATCTTGCTAAAA
CACAAAATGCTTTGCGAGAAGTTGAAAATAGACACGCTGATATTTTGGTG
GCCATGACGTAGATGGAGAAGATATCGAAGAAATGCTGGAAAATAATGAA
GTCAATGTTTTCACCAAGCATCTGGTCAATGTGTTGGTCTTGATCTTCCA
AGAAGTGATGGAGGAATTCAATCGAACGCAAATCGAACATCGCGATCATT
GTAAAAGTAGAATCAAACGACAGTTTGAAATATGTCTAAAGGTGGTTGTG
GAAGGAGAGAAGAGAGATGGCTACATCACAACAGAAGGGAAAATGAAGAG
AGATCAGGACTTCACGAAGAACATGATATTTTGGTCAGTGAAATCAAGAA
AGAATCTTCAAGTGTCAACGAACAAATTAAACATCACAGAGCTACACCAA
AGAGTGGAGCAAATACATGTCTTGTTAGCTGACCTAAAGAAACATCAAGG
AGAAATCATCTCAGAAATTCACATGAATAAAAAGTTACCAACAATCTTCG
GAAGATGAGGAGCGAGATTTCTTGATGGAAGTTGATGAACCTTTCGTTGA
TCACCACCTTCCTGATGATGTTGAAGACTTCCTTCTTATGATCAAAATGA
CACGTGATTTGATGCCGCAGTTCATTCGCTTGCATGAGCAGGGTATCGAT
GATCTTGCTAAAACACAAAATGCTTTGCGAGAAGTTGAAAATAGACACGC
TGATATTTTGGTGGCCATGACGTAGATGGAGAAGATATCGAAGAAATGCT
GGAAAATAATGAAGTCAATGTTTTCACCAAGCATCTGGTCAATGTGTTGG
TCTTGATCTTCCAAGAAGTGATGGAGGAATTCAATCGAACGCAAATCGAA
CATCGCGATCATTGTAAAAGTAGAATCAAACGACAGTTTGAAATATGTCT
AAAGGTGGTTGTGGAAGGAGAGAAGAGAGATGGCTACATCACAACAGAAG
GGAAAATGAAGAGAGATCAGGACTTCACGAAGAACATGATATTTTGGTCA
GTGAAATCAAGAAAGAATCTTCAAGTGTCAACGAACAAATTAAACATCAC
AGAGCTACACCAAAGAGTGGAGCAAATACATGTCTTGTTAGCTGACCTAA
AGAAACATCAAGGAGAAATCATCTCAGAAATTCACATGAATAAAAAGTTA
CCAACAATCTTCGGAAGATGAGGAGCGAGATTTCTTGATGGAAGTTGATG
AACCTTTCGTTGATCACCACCTTCCTGATGATGTTGAAGACTTCCTTCTT
ATGATCAAAATGACACGTGATTTGATGCCGCAGTTCATTCGCTTGCATGA
GCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031690XLOC_031690Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050024-proteinTCONS_00050024-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050024-exon-scaffold_167-1575043694:227774..227824TCONS_00050024-exon-scaffold_167-1575043694:227774..227824Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1575043694:225478..225585TCONS_00050024-exon-scaffold_167-1575043694:225478..225585Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1575043694:224981..225080TCONS_00050024-exon-scaffold_167-1575043694:224981..225080Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1575043694:224078..224152TCONS_00050024-exon-scaffold_167-1575043694:224078..224152Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1575043694:219139..219212TCONS_00050024-exon-scaffold_167-1575043694:219139..219212Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1575043694:217917..218025TCONS_00050024-exon-scaffold_167-1575043694:217917..218025Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1575043694:216944..217020TCONS_00050024-exon-scaffold_167-1575043694:216944..217020Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1575043694:216426..216494TCONS_00050024-exon-scaffold_167-1575043694:216426..216494Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1510915933:227774..227824TCONS_00050024-exon-scaffold_167-1510915933:227774..227824Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1510915933:225478..225585TCONS_00050024-exon-scaffold_167-1510915933:225478..225585Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1510915933:224981..225080TCONS_00050024-exon-scaffold_167-1510915933:224981..225080Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1510915933:224078..224152TCONS_00050024-exon-scaffold_167-1510915933:224078..224152Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1510915933:219139..219212TCONS_00050024-exon-scaffold_167-1510915933:219139..219212Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1510915933:217917..218025TCONS_00050024-exon-scaffold_167-1510915933:217917..218025Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1510915933:216944..217020TCONS_00050024-exon-scaffold_167-1510915933:216944..217020Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1510915933:216426..216494TCONS_00050024-exon-scaffold_167-1510915933:216426..216494Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1491911889:227774..227824TCONS_00050024-exon-scaffold_167-1491911889:227774..227824Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1491911889:225478..225585TCONS_00050024-exon-scaffold_167-1491911889:225478..225585Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1491911889:224981..225080TCONS_00050024-exon-scaffold_167-1491911889:224981..225080Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1491911889:224078..224152TCONS_00050024-exon-scaffold_167-1491911889:224078..224152Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1491911889:219139..219212TCONS_00050024-exon-scaffold_167-1491911889:219139..219212Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1491911889:217917..218025TCONS_00050024-exon-scaffold_167-1491911889:217917..218025Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1491911889:216944..217020TCONS_00050024-exon-scaffold_167-1491911889:216944..217020Clytia hemisphaericaexon
TCONS_00050024-exon-scaffold_167-1491911889:216426..216494TCONS_00050024-exon-scaffold_167-1491911889:216426..216494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:216426..227824 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.312579	0.22861	0	0	0	0.249824	7.03272	9.87593	9.41671	7.25949	5.06695	5.56871	4.67745	4.26387	2.35178	2.2381	1.81855	2.22472	8.80538	6.43255	3.70219	3.09565	1.07519	1.54772	2.51702	2.99517	0.107152	0.114356	1.30102	1.06043
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006011Syntaxin_N
IPR010989SNARE
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
Blast
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BLAST of TCONS_00050024 vs. Swiss-Prot (Human)
Match: STX1B (Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.739e-21
Identity = 52/175 (29.71%), Postives = 104/175 (59.43%), Query Frame = 1 
Query:  139 VEDFLLMITELHQRVEQIHVLLADLKKHQGEIISEIHMNKRLHEEHDILVSEIKKESSSVNEQIKRLKVVVEGEKRDGYITTEGKMKRDQVNVLVLIFQEVMEEFNRTQIEHRDHCKSRIKRQFEICGHDVDGEDIEEMLENNEVNVFTKHLGIDDLAKTQNALREVENRHADIL 663
            +++F   + E+   +E++   +  +KK    I++  + +++  +E + L ++IKK ++ V  ++K ++  +E E+     + + ++++ Q + L   F EVM E+N TQ ++RD CK RI+RQ EI G     E++E+MLE+ ++ +FT  + +D    T+ AL E+E RH +I+
Sbjct:   29 MDEFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRSKLKAIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLAIFTDDIKMDS-QMTKQALNEIETRHNEII 202
The following BLAST results are available for this feature:
BLAST of TCONS_00050024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX1B2.739e-2129.71Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1[more]
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