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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050028 ID=TCONS_00050028|Name=TCONS_00050028|organism=Clytia hemisphaerica|type=transcript|length=2783bpRun BLAST on NCBI protein sequence of TCONS_00050028-protein >TCONS_00050028-protein ID=TCONS_00050028-protein|Name=TCONS_00050028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=653bp MASNIGGTGTSGGGSFGILGGEVLPPKGNENKLITSSTANRADDLGEDDVRun BLAST on NCBI transcript from alignment at scaffold_167:248590..265123- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050028 ID=TCONS_00050028|Name=TCONS_00050028|organism=Clytia hemisphaerica|type=transcript|length=16534bp|location=Sequence derived from alignment at scaffold_167:248590..265123- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:248590..265123- >TCONS_00050028 ID=TCONS_00050028|Name=TCONS_00050028|organism=Clytia hemisphaerica|type=CDS|length=17658bp|location=Sequence derived from alignment at scaffold_167:248590..265123- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050028 vs. Swiss-Prot (Human)
Match: DEAF1 (Deformed epidermal autoregulatory factor 1 homolog OS=Homo sapiens GN=DEAF1 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.995e-26 Identity = 60/115 (52.17%), Postives = 78/115 (67.83%), Query Frame = 2
Query: 1028 SKGKWEMAAKANILTVRCREEVAELHKDKFGSGSKGKCIKFGDKWCTPIEFEGLAGRASCKDWKRSIRFHGLHLQKLIEDQFLTLHAISCTCGICCGDETLTGPVKLFQSVKRKR 1372
+K W+ + + L VRCR L+K++ GSG +G+CIK G+ W +P EFE +AGRAS KDWKRSIR+ G LQ LI+D L HA SCTC CC D TL+GPV+LF KR++
Sbjct: 190 TKYNWDPSVYDSELPVRCRNISGTLYKNRLGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAASCTCAACCDDMTLSGPVRLFVPYKRRK 304 The following BLAST results are available for this feature:
BLAST of TCONS_00050028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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