TCONS_00050147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050147
Unique NameTCONS_00050147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050147 ID=TCONS_00050147|Name=TCONS_00050147|organism=Clytia hemisphaerica|type=transcript|length=406bp
NTCAATCGGTGAAAACTGATCAAAACAATTCATTCCATCGTTAAtatatt
ctgaatttttattttccgaAATATCCATTAATTTTACACTTTGATTCTTA
TGATCTTGAGATTTTGACTCATCTTCAAGTTTAATGataatttcacaatt
tttggGGTTTGTTTTTTGGGGTGATGTAACATCGTTCCCCTTTacatttc
tacaagaattttcaaatagtTCACTTTCATGATTTTTGAATGGTTCCATA
TTTTCGTCATCTGGATATCCGATTGATTCATCTTCCAGTTTGATAACAAT
TTCCAAATGTTCAAGATTCGTTTCATCACAACCATGATTTTCTTCTTGtt
caatttttatctttatttcttcaatctcattcattttttaaacaaaatac
tcTAAG
Run BLAST on NCBI

protein sequence of TCONS_00050147-protein

>TCONS_00050147-protein ID=TCONS_00050147-protein|Name=TCONS_00050147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MNEIEEIKIKIEQEENHGCDETNLEHLEIVIKLEDESIGYPDDENMEPFK
NHESELFENSCRNVKGNDVTSPQKTNPKNCEIIIKLEDESKSQDHKNQSV
KLMDISENKNSEYINDGMNCFDQFSPIX
Run BLAST on NCBI

transcript from alignment at scaffold_167:287567..287972

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050147 ID=TCONS_00050147|Name=TCONS_00050147|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at scaffold_167:287567..287972 (Clytia hemisphaerica)
CTTAgagtattttgtttaaaaaatgaatgagattgaagaaataaagataa
aaattgaaCAAGAAGAAAATCATGGTTGTGATGAAACGAATCTTGAACAT
TTGGAAATTGTTATCAAACTGGAAGATGAATCAATCGGATATCCAGATGA
CGAAAATATGGAACCATTCAAAAATCATGAAAGTGAactatttgaaaatt
cttgtagaaatgtAAAGGGGAACGATGTTACATCACCCCAAAAAACAAAC
CccaaaaattgtgaaattatCATTAAACTTGAAGATGAGTCAAAATCTCA
AGATCATAAGAATCAAAGTGTAAAATTAATGGATATTtcggaaaataaaa
attcagaatataTTAACGATGGAATGAATTGTTTTGATCAGTTTTCACCG
ATTGAN

Coding sequence (CDS) from alignment at scaffold_167:287567..287972

>TCONS_00050147 ID=TCONS_00050147|Name=TCONS_00050147|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_167:287567..287972 (Clytia hemisphaerica)
atgaatgagattgaagaaataaagataaaaattgaaCAAGAAGAAAATCA
TGGTTGTGATGAAACGAATCTTGAACATTTGGAAATTGTTATCAAACTGG
AAGATGAATCAATCGGATATCCAGATGACGAAAATATGGAACCATTCAAA
AATCATGAAAGTGAactatttgaaaattcttgtagaaatgtAAAGGGGAA
CGATGTTACATCACCCCAAAAAACAAACCccaaaaattgtgaaattatCA
TTAAACTTGAAGATGAGTCAAAATCTCAAGATCATAAGAATCAAAGTGTA
AAATTAATGGATATTtcggaaaataaaaattcagaatataTTAACGATGG
AATGAATTGTTTTGATCAGTTTTCACCGATTGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031752XLOC_031752Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050147-exon-scaffold_167-1491911889:287567..287972TCONS_00050147-exon-scaffold_167-1491911889:287567..287972Clytia hemisphaericaexon
TCONS_00050147-exon-scaffold_167-1510915933:287567..287972TCONS_00050147-exon-scaffold_167-1510915933:287567..287972Clytia hemisphaericaexon
TCONS_00050147-exon-scaffold_167-1575043694:287567..287972TCONS_00050147-exon-scaffold_167-1575043694:287567..287972Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050147-proteinTCONS_00050147-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:287567..287972 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.37542	5.23402	2.82933	1.94849	8.16311	4.25956	10.0643	10.6878	5.79955	2.62764	3.83772	3.63815	3.02436	3.54657	1.32062	1.13994	3.24463	2.68672	2.04984	0	2.18042	1.56069	6.85386	4.88855	2.91786	2.83351	2.19614	0.62511	3.11301	5.54606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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