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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049876 ID=TCONS_00049876|Name=TCONS_00049876|organism=Clytia hemisphaerica|type=transcript|length=892bp
CATCATGCTTAAAGAAAGGGAATAATTTTGGTATAAAAACTCAAAAACCA
TGTTGGTCTAAGATACATTAGAGTATTTGACTGTTAATTTAACGGATGAG
AAATCTAGGACAAATTTATAATTCAAAATGGCAGACGAAGCATTGAAGAA
AGCAATGGAGTCATTAGATTTGCTTGAAAATACGGTGAAAGACCAAACAA
GCCACATCAAAAACGTACAAGAATCGGTTGACACTCTTAGAAAGGATCTT
CTAAAAGAGAAAACGGAGAGTGAAAAATATGTCCAAGCAGCTCAGGGAGT
TGTTGATCTTGCAAACACTATAGTCAATAATTGGCAGAAATTTACTTCTA
ACGACCCTTTACAAATCACATCTGGAGCTATTGCAATTATCGGTTCTATT
GCCGGGGCTGTCGGAGGGCCGATTGGTCTTTTGGTCTCTGGCGTATGTGG
CCTCTTGACTGGCTTCTTGTCACTATTTGGTGGTAACAGTGGTCCATCTC
TCGGGGATGTCGTTGATCAAGTGATTCGAAAAGCTCTTAATGATTACAAG
GATGAAACAATCCACGCTCAGGTGATTGGTTCCTTAAAGGAGACAACAGC
TCACATAGCGAATTTGAATGGTGTAGCTTTGTACAATGATGGTCAAATGA
CGGATGTTGAAAAATCATTTCTAACAAGTATAGATTTTTCAACAATTGGA
GTCGAAACTCTTGGTGAACTTCAAGaacaattgaataaaaacaaactgac
TCAAGATCCACCGACAGCGACTAGATTGGCAAATTATTGCTACTTCTACT
GCATGATATCACTATTGAAGCGCATTGTCTTAACCTTGCAGTGTAGCCTT
CTTCGACAAAACAGTATGGAGTCCATCCACGCTGGCGTCGCT Run BLAST on NCBI protein sequence of TCONS_00049876-protein >TCONS_00049876-protein ID=TCONS_00049876-protein|Name=TCONS_00049876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MADEALKKAMESLDLLENTVKDQTSHIKNVQESVDTLRKDLLKEKTESEK
YVQAAQGVVDLANTIVNNWQKFTSNDPLQITSGAIAIIGSIAGAVGGPIG
LLVSGVCGLLTGFLSLFGGNSGPSLGDVVDQVIRKALNDYKDETIHAQVI
GSLKETTAHIANLNGVALYNDGQMTDVEKSFLTSIDFSTIGVETLGELQE
QLNKNKLTQDPPTATRLANYCYFYCMISLLKRIVLTLQCSLLRQNSMESI
HAGVA Run BLAST on NCBI transcript from alignment at scaffold_167:288332..289788+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049876 ID=TCONS_00049876|Name=TCONS_00049876|organism=Clytia hemisphaerica|type=transcript|length=1457bp|location=Sequence derived from alignment at scaffold_167:288332..289788+ (Clytia hemisphaerica)
CATCATGCTTAAAGAAAGGGAATAATTTTGGTATAAAAACTCAAAAACCA
TGTTGGTCTAAGATACATTAGAGTATTTGACTGTTAATTTAACGGATGAG
AAATCTAGGACAAATTTATAATTCAAAATGGCAGACGAAGCATTGAAGAA
AGCAATGGAGTCATTAGATTTGCTTGAAAATACGGTATGTATCGAGCAGA
TTTCAAGTGTTTTTTTGTTGAGATATAGGGAttagaattaaagtctgtct
caaaataatttgagaaaatattcATGTAATCAAAAGAAGTTTATTGCtag
ttgactctataaagtagtaaaaaccgacaaaacgtaaaaaacgatcaatc
aataacaaactttgtttgatatcttttgattgaatgaatatttttgaaaa
tattttttcacagtgattgaagaatttaaatttttgaaattttcaggctt
gCATGTTccgaaattgttcttattctgaTTTGACTTTAGaacatttcatt
cattttaatttattttgaaatgtgtATTTTTCGAGCctttataaaataaa
tttggttggaaaaattggaaaattacaGCGTAAAACGATGTTTATTTATC
TATACTGTTTATCCAGTCCTGCTcttatttattttgttctttagagctga
gcctcagattgttcttaatttgttcttaggttttctcaaattctcagcct
cgtgttctgataaaaaatagCGTGTATTATTCTCTCCTAATATTTTCAGG
TGAAAGACCAAACAAGCCACATCAAAAACGTACAAGAATCGGTTGACACT
CTTAGAAAGGATCTTCTAAAAGAGAAAACGGAGAGTGAAAAATATGTCCA
AGCAGCTCAGGGAGTTGTTGATCTTGCAAACACTATAGTCAATAATTGGC
AGAAATTTACTTCTAACGACCCTTTACAAATCACATCTGGAGCTATTGCA
ATTATCGGTTCTATTGCCGGGGCTGTCGGAGGGCCGATTGGTCTTTTGGT
CTCTGGCGTATGTGGCCTCTTGACTGGCTTCTTGTCACTATTTGGTGGTA
ACAGTGGTCCATCTCTCGGGGATGTCGTTGATCAAGTGATTCGAAAAGCT
CTTAATGATTACAAGGATGAAACAATCCACGCTCAGGTGATTGGTTCCTT
AAAGGAGACAACAGCTCACATAGCGAATTTGAATGGTGTAGCTTTGTACA
ATGATGGTCAAATGACGGATGTTGAAAAATCATTTCTAACAAGTATAGAT
TTTTCAACAATTGGAGTCGAAACTCTTGGTGAACTTCAAGaacaattgaa
taaaaacaaactgacTCAAGATCCACCGACAGCGACTAGATTGGCAAATT
ATTGCTACTTCTACTGCATGATATCACTATTGAAGCGCATTGTCTTAACC
TTGCAGTGTAGCCTTCTTCGACAAAACAGTATGGAGTCCATCCACGCTGG
CGTCGCT Coding sequence (CDS) from alignment at scaffold_167:288332..289788+ >TCONS_00049876 ID=TCONS_00049876|Name=TCONS_00049876|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_167:288332..289788+ (Clytia hemisphaerica)
ATGGCAGACGAAGCATTGAAGAAAGCAATGGAGTCATTAGATTTGCTTGA
AAATACGGTGAAAGACCAAACAAGCCACATCAAAAACGTACAAGAATCGG
TTGACACTCTTAGAAAGGATCTTCTAAAAGAGAAAACGGAGAGTGAAAAA
TATGTCCAAGCAGCTCAGGGAGTTGTTGATCTTGCAAACACTATAGTCAA
TAATTGGCAGAAATTTACTTCTAACGACCCTTTACAAATCACATCTGGAG
CTATTGCAATTATCGGTTCTATTGCCGGGGCTGTCGGAGGGCCGATTGGT
CTTTTGGTCTCTGGCGTATGTGGCCTCTTGACTGGCTTCTTGTCACTATT
TGGTGGTAACAGTGGTCCATCTCTCGGGGATGTCGTTGATCAAGTGATTC
GAAAAGCTCTTAATGATTACAAGGATGAAACAATCCACGCTCAGGTGATT
GGTTCCTTAAAGGAGACAACAGCTCACATAGCGAATTTGAATGGTGTAGC
TTTGTACAATGATGGTCAAATGACGGATGTTGAAAAATCATTTCTAACAA
GTATAGATTTTTCAACAATTGGAGTCGAAACTCTTGGTGAACTTCAAGaa
caattgaataaaaacaaactgacTCAAGATCCACCGACAGCGACTAGATT
GGCAAATTATTGCTACTTCTACTGCATGATATCACTATTGAAGCGCATTG
TCTTAACCTTGCAGTGTAGCCTTCTTCGACAAAACAGTATGGAGTCCATC
CACGCTGGCGTCGCTATGGCAGACGAAGCATTGAAGAAAGCAATGGAGTC
ATTAGATTTGCTTGAAAATACGGTGAAAGACCAAACAAGCCACATCAAAA
ACGTACAAGAATCGGTTGACACTCTTAGAAAGGATCTTCTAAAAGAGAAA
ACGGAGAGTGAAAAATATGTCCAAGCAGCTCAGGGAGTTGTTGATCTTGC
AAACACTATAGTCAATAATTGGCAGAAATTTACTTCTAACGACCCTTTAC
AAATCACATCTGGAGCTATTGCAATTATCGGTTCTATTGCCGGGGCTGTC
GGAGGGCCGATTGGTCTTTTGGTCTCTGGCGTATGTGGCCTCTTGACTGG
CTTCTTGTCACTATTTGGTGGTAACAGTGGTCCATCTCTCGGGGATGTCG
TTGATCAAGTGATTCGAAAAGCTCTTAATGATTACAAGGATGAAACAATC
CACGCTCAGGTGATTGGTTCCTTAAAGGAGACAACAGCTCACATAGCGAA
TTTGAATGGTGTAGCTTTGTACAATGATGGTCAAATGACGGATGTTGAAA
AATCATTTCTAACAAGTATAGATTTTTCAACAATTGGAGTCGAAACTCTT
GGTGAACTTCAAGaacaattgaataaaaacaaactgacTCAAGATCCACC
GACAGCGACTAGATTGGCAAATTATTGCTACTTCTACTGCATGATATCAC
TATTGAAGCGCATTGTCTTAACCTTGCAGTGTAGCCTTCTTCGACAAAAC
AGTATGGAGTCCATCCACGCTGGCGTCGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049876-exon-scaffold_167-1491911889:288332..288515 | TCONS_00049876-exon-scaffold_167-1491911889:288332..288515 | Clytia hemisphaerica | exon |
| TCONS_00049876-exon-scaffold_167-1510915933:288332..288515 | TCONS_00049876-exon-scaffold_167-1510915933:288332..288515 | Clytia hemisphaerica | exon |
| TCONS_00049876-exon-scaffold_167-1575043694:288332..288515 | TCONS_00049876-exon-scaffold_167-1575043694:288332..288515 | Clytia hemisphaerica | exon |
| TCONS_00049876-exon-scaffold_167-1491911889:289081..289788 | TCONS_00049876-exon-scaffold_167-1491911889:289081..289788 | Clytia hemisphaerica | exon |
| TCONS_00049876-exon-scaffold_167-1510915933:289081..289788 | TCONS_00049876-exon-scaffold_167-1510915933:289081..289788 | Clytia hemisphaerica | exon |
| TCONS_00049876-exon-scaffold_167-1575043694:289081..289788 | TCONS_00049876-exon-scaffold_167-1575043694:289081..289788 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:288332..289788 + |
Blast
The following BLAST results are available for this feature:
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