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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050148 ID=TCONS_00050148|Name=TCONS_00050148|organism=Clytia hemisphaerica|type=transcript|length=972bp
TTGAGTGTGAAGCACCAAAGTGGCAAGATCGGAATCTTCAACCTtcccaa
gcaagaaaaagtgaaaccttaagTTTGCCCCACAATAAGAAATTCTGTTT
GAAAAACACACGGGTCACGTGTTCTGGATCACGGATCTGGATCTTGAAAA
AATGAGTTCAACGCAACCCTACTTTGGAGCATGTGGCATCCCCACTGATA
CAGAAAAACATAAATTATGATTGGTATGTAAAAAGCGAGCTTTTATTAGT
TTATAACTAGATATAAAAGTTAATAGAATAGTCATTAAATAAAATGCtat
aaataaaagaattttgatCATATAGTTGAATGATGATTTATAATTAAAGA
TTTTCTGTCTATAACACAAGTTTTGAGTGGATCTGTATTTACATGATGTT
GTCGTATTAAGCTGTCTTCTTGGCCTGTTTGAAACTGGAAATCGACAGAT
GCGAAAGCAATATTATACATATAAGCGCTAAAAATGGGTCAAGCGATTCA
ATTAACGTTTACGAACTCTTTTATGGATTTCAAGACTTTGGAGATGCAAG
AAGAAGAAACAATTTTGGACCTTAGAATGGAGATTAGTCGATTGACAGGA
GTTAAAGTAAATCTTATTGATGTTTTCGATCAAGATGGTAATGAATTGAG
TGGTTCTTGCCAGTTTTGTGAAGACACAGACTACTTTTCAATATTACAAA
CCAAAGTGAAGATTtacatcgaaatcgaaagaaaaagaGTTGTAACAGAA
ATCGAACGCATCTCACTACAGAATGGGCGAACGGTAGAATTGAAGATTTG
TTATCAGTGACCGAATACAATAATGGAGCCTTTGGGTATCTGGATATTGA
TGAAGAATACATTGAGAATCAAGGACTTGAGTTAGAGACGCCTTTTAAGG
ACGTTGGTGAACGTAAAATACGTTTCGTTGTTGACAGTCCTTACAGAGAA
TGCCTTCTTATGTGAGGATTAC Run BLAST on NCBI protein sequence of TCONS_00050148-protein >TCONS_00050148-protein ID=TCONS_00050148-protein|Name=TCONS_00050148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MGQAIQLTFTNSFMDFKTLEMQEEETILDLRMEISRLTGVKVNLIDVFDQ
DGNELSGSCQFCEDTDYFSILQTKVKIYIEIERKRVVTEIERISLQNGRT
VELKICYQ Run BLAST on NCBI transcript from alignment at scaffold_167:297829..298800 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050148 ID=TCONS_00050148|Name=TCONS_00050148|organism=Clytia hemisphaerica|type=transcript|length=972bp|location=Sequence derived from alignment at scaffold_167:297829..298800 (Clytia hemisphaerica)
GTAATCCTCACATAAGAAGGCATTCTCTGTAAGGACTGTCAACAACGAAA
CGTATTTTACGTTCACCAACGTCCTTAAAAGGCGTCTCTAACTCAAGTCC
TTGATTCTCAATGTATTCTTCATCAATATCCAGATACCCAAAGGCTCCAT
TATTGTATTCGGTCACTGATAACAAATCTTCAATTCTACCGTTCGCCCAT
TCTGTAGTGAGATGCGTTCGATTTCTGTTACAACtctttttctttcgatt
tcgatgtaAATCTTCACTTTGGTTTGTAATATTGAAAAGTAGTCTGTGTC
TTCACAAAACTGGCAAGAACCACTCAATTCATTACCATCTTGATCGAAAA
CATCAATAAGATTTACTTTAACTCCTGTCAATCGACTAATCTCCATTCTA
AGGTCCAAAATTGTTTCTTCTTCTTGCATCTCCAAAGTCTTGAAATCCAT
AAAAGAGTTCGTAAACGTTAATTGAATCGCTTGACCCATTTTTAGCGCTT
ATATGTATAATATTGCTTTCGCATCTGTCGATTTCCAGTTTCAAACAGGC
CAAGAAGACAGCTTAATACGACAACATCATGTAAATACAGATCCACTCAA
AACTTGTGTTATAGACAGAAAATCTTTAATTATAAATCATCATTCAACTA
TATGatcaaaattcttttatttataGCATTTTATTTAATGACTATTCTAT
TAACTTTTATATCTAGTTATAAACTAATAAAAGCTCGCTTTTTACATACC
AATCATAATTTATGTTTTTCTGTATCAGTGGGGATGCCACATGCTCCAAA
GTAGGGTTGCGTTGAACTCATTTTTTCAAGATCCAGATCCGTGATCCAGA
ACACGTGACCCGTGTGTTTTTCAAACAGAATTTCTTATTGTGGGGCAAAc
ttaaggtttcactttttcttgcttgggaAGGTTGAAGATTCCGATCTTGC
CACTTTGGTGCTTCACACTCAA Coding sequence (CDS) from alignment at scaffold_167:297829..298800 >TCONS_00050148 ID=TCONS_00050148|Name=TCONS_00050148|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_167:297829..298800 (Clytia hemisphaerica)
TCACTGATAACAAATCTTCAATTCTACCGTTCGCCCATTCTGTAGTGAGA
TGCGTTCGATTTCTGTTACAACtctttttctttcgatttcgatgtaAATC
TTCACTTTGGTTTGTAATATTGAAAAGTAGTCTGTGTCTTCACAAAACTG
GCAAGAACCACTCAATTCATTACCATCTTGATCGAAAACATCAATAAGAT
TTACTTTAACTCCTGTCAATCGACTAATCTCCATTCTAAGGTCCAAAATT
GTTTCTTCTTCTTGCATCTCCAAAGTCTTGAAATCCATAAAAGAGTTCGT
AAACGTTAATTGAATCGCTTGACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050148-exon-scaffold_167-1491911889:297829..298800 | TCONS_00050148-exon-scaffold_167-1491911889:297829..298800 | Clytia hemisphaerica | exon |
| TCONS_00050148-exon-scaffold_167-1510915933:297829..298800 | TCONS_00050148-exon-scaffold_167-1510915933:297829..298800 | Clytia hemisphaerica | exon |
| TCONS_00050148-exon-scaffold_167-1575043694:297829..298800 | TCONS_00050148-exon-scaffold_167-1575043694:297829..298800 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:297829..298800 . |
Blast
The following BLAST results are available for this feature:
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