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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050150 ID=TCONS_00050150|Name=TCONS_00050150|organism=Clytia hemisphaerica|type=transcript|length=2046bp
ttttaggatgattttcccaaaaaagttacgaatatccatgatgaaatgga
tttacaccattcttataaaaaaaagcgtgtagacaaaaagaacgacaaac
ttcataaagaacgacaaatttcagaTTACctattcttaaaaaaagtgcAA
GTTAAGGTATTgaaataattctaaaacaagcaaaaaatattacaaaagat
tctaccAAAACGAACTAAAAACAGCCAAGCTCTTGCCTTCAGtgtatgtc
aaattttctttatattaTTGGTTCGCAAGTAAATATGGGAGCACAGTTTA
TTTGATACTAAGCTTTTTCGAGTCGGGCGCCAACAATATCCGTCGAAAAT
GAAAGGGCGCATACCTCCCTCTCCAAATGGCAACTACCACCTCACATTCT
CAAAAATTTGCCGACTTCTTTAAAGCTCTTAGCGTGGACGGTATCTAAAA
CCCCATGGAAATATCCGATTAATTTTGGGTGGGCTAACAAGGAAACGTAT
TTTACGACGGCCAACATTTTTAAAAGGTGTCTCTAATGTTAATCCTCCAC
TACCAAAATGTTGCTCATCGATAGTTAGATACCCATAAGCTCTATTATTG
TATTCGGTCACTGATAACAAATCCTCAATTCTACCATCCGCCCATTCTGT
AGTGAGATGTCGTTCGATTTCTGTTACAACTCCTTTTCTTTCGATTTCCA
AGACAATTTTAGCTTTGACTTGTAAATCCAAATCCAAAAATTGTAATTGT
AAATCCAAAAATATTGTATCTTTGGTAGGATGCTTCACAATGACTGACCT
TAATCGTTTTAGATTCAATTCCTGAATGATTGGTAAGAGCTCTGTTTCAT
TATCATCTGCTTGGACAGATAAAATCACTTCCAAAGACTGGACAATCCTA
CGAATATTTTGTTTGGATTTTAACTGCTTGATTAATTGTTCTTGCGTTAT
TCTAATATTATTATAAAACATTATTTGGTTTTTGATTGGTATTTTAAATA
TCTCCTCTAGATAATTCCCAATGGATTGACCCTCTTGACCACGAAAATGA
TAAGTTGCCAGTACATCACCAGAGCTGATCGATCCAAAGATTCTTGCCGA
CACCAttgtttttatcttattttgctgataCACTTTTTGAAGGTCTACAT
CTTCCGTACTAAAAATGCTCACATCGATTTTATATTGTCCCGCGTCTTTA
TCTACCATCATTAATCCAAAACTATCATCAGTCATTTCCAGACCACTTAG
AGTGAACACTTGCTCATTAATTGGATCCTTGAATTTCTTCTGAATCCAGT
ATTTCAAGTCAATCATACTAAACGTACCTAGTTTTGGTAACAAAATGTCC
AAAGACATTGGATTCAGATCTGAAATCTGGATCTCAATCAATGGTATGAC
TTTCATCTTATATTTCTTGATGCTTTCTTTGTTCAAAGGGAATAGAACTT
TCAATTCCATTGGTTGAGCACGTGGTAAATCAAGTAATAGATCAACAATA
GGTTGTTCATCAATCAAGAAAGAACAATAATGCGGTGGTAACAGTAATCT
GATTTGAGAATGTCCTGAAGGTGCATCAATATCTGAAAGATGAAGACCTT
CTGATATCAAATCGATTCTCAAATTTGCTTGAAGTGCAAGCTTCAATTCT
CGAATAGTGGATGATATATGTGGTTTGAATTCGTAAACGATATTCTTTGA
AGTCAATGTAGTTGTCCGGTATACTTTGACTGTACAGTCACTTCGTTTTA
ACATCTCCATTCGTTCCTTACTGATGTTGTCCATAAGATCACCCCTAGCT
TCAAATTTCACTTTCTCAGACAATCGATTCTcatacaaagtctcataaag
tTCTTCAGTGACCAAACATTCGCCATGATAAACCACAAACTCTTTTAAAG
GATCGATTCTGAATCTCTTTCGTAAGGCTTCTTGGAACTTTTGGAAAGTC
CGGACATCAAACCAATAGAATATAGAAGGTTGGTATCCAGCTATCTTTAA
CACAAAATGGTTCATCATTTTTCTTACATATTATTTTTAAACTGAG Run BLAST on NCBI protein sequence of TCONS_00050150-protein >TCONS_00050150-protein ID=TCONS_00050150-protein|Name=TCONS_00050150-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MMNHFVLKIAGYQPSIFYWFDVRTFQKFQEALRKRFRIDPLKEFVVYHGE
CLVTEELYETLYENRLSEKVKFEARGDLMDNISKERMEMLKRSDCTVKVY
RTTTLTSKNIVYEFKPHISSTIRELKLALQANLRIDLISEGLHLSDIDAP
SGHSQIRLLLPPHYCSFLIDEQPIVDLLLDLPRAQPMELKVLFPLNKESI
KKYKMKVIPLIEIQISDLNPMSLDILLPKLGTFSMIDLKYWIQKKFKDPI
NEQVFTLSGLEMTDDSFGLMMVDKDAGQYKIDVSIFSTEDVDLQKVYQQN
KIKTMVSARIFGSISSGDVLATYHFRGQEGQSIGNYLEEIFKIPIKNQIM
FYNNIRITQEQLIKQLKSKQNIRRIVQSLEVILSVQADDNETELLPIIQE
LNLKRLRSVIVKHPTKDTIFLDLQLQFLDLDLQVKAKIVLEIERKGVVTE
IERHLTTEWADGRIEDLLSVTEYNNRAYGYLTIDEQHFGSGGLTLETPFK
NVGRRKIRFLVSPPKINRIFPWGFRYRPR Run BLAST on NCBI transcript from alignment at scaffold_167:307247..309292 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050150 ID=TCONS_00050150|Name=TCONS_00050150|organism=Clytia hemisphaerica|type=transcript|length=2046bp|location=Sequence derived from alignment at scaffold_167:307247..309292 (Clytia hemisphaerica)
CTCAGTTTAAAAATAATATGTAAGAAAAATGATGAACCATTTTGTGTTAA
AGATAGCTGGATACCAACCTTCTATATTCTATTGGTTTGATGTCCGGACT
TTCCAAAAGTTCCAAGAAGCCTTACGAAAGAGATTCAGAATCGATCCTTT
AAAAGAGTTTGTGGTTTATCATGGCGAATGTTTGGTCACTGAAGAacttt
atgagactttgtatgAGAATCGATTGTCTGAGAAAGTGAAATTTGAAGCT
AGGGGTGATCTTATGGACAACATCAGTAAGGAACGAATGGAGATGTTAAA
ACGAAGTGACTGTACAGTCAAAGTATACCGGACAACTACATTGACTTCAA
AGAATATCGTTTACGAATTCAAACCACATATATCATCCACTATTCGAGAA
TTGAAGCTTGCACTTCAAGCAAATTTGAGAATCGATTTGATATCAGAAGG
TCTTCATCTTTCAGATATTGATGCACCTTCAGGACATTCTCAAATCAGAT
TACTGTTACCACCGCATTATTGTTCTTTCTTGATTGATGAACAACCTATT
GTTGATCTATTACTTGATTTACCACGTGCTCAACCAATGGAATTGAAAGT
TCTATTCCCTTTGAACAAAGAAAGCATCAAGAAATATAAGATGAAAGTCA
TACCATTGATTGAGATCCAGATTTCAGATCTGAATCCAATGTCTTTGGAC
ATTTTGTTACCAAAACTAGGTACGTTTAGTATGATTGACTTGAAATACTG
GATTCAGAAGAAATTCAAGGATCCAATTAATGAGCAAGTGTTCACTCTAA
GTGGTCTGGAAATGACTGATGATAGTTTTGGATTAATGATGGTAGATAAA
GACGCGGGACAATATAAAATCGATGTGAGCATTTTTAGTACGGAAGATGT
AGACCTTCAAAAAGTGtatcagcaaaataagataaaaacaaTGGTGTCGG
CAAGAATCTTTGGATCGATCAGCTCTGGTGATGTACTGGCAACTTATCAT
TTTCGTGGTCAAGAGGGTCAATCCATTGGGAATTATCTAGAGGAGATATT
TAAAATACCAATCAAAAACCAAATAATGTTTTATAATAATATTAGAATAA
CGCAAGAACAATTAATCAAGCAGTTAAAATCCAAACAAAATATTCGTAGG
ATTGTCCAGTCTTTGGAAGTGATTTTATCTGTCCAAGCAGATGATAATGA
AACAGAGCTCTTACCAATCATTCAGGAATTGAATCTAAAACGATTAAGGT
CAGTCATTGTGAAGCATCCTACCAAAGATACAATATTTTTGGATTTACAA
TTACAATTTTTGGATTTGGATTTACAAGTCAAAGCTAAAATTGTCTTGGA
AATCGAAAGAAAAGGAGTTGTAACAGAAATCGAACGACATCTCACTACAG
AATGGGCGGATGGTAGAATTGAGGATTTGTTATCAGTGACCGAATACAAT
AATAGAGCTTATGGGTATCTAACTATCGATGAGCAACATTTTGGTAGTGG
AGGATTAACATTAGAGACACCTTTTAAAAATGTTGGCCGTCGTAAAATAC
GTTTCCTTGTTAGCCCACCCAAAATTAATCGGATATTTCCATGGGGTTTT
AGATACCGTCCACGCTAAGAGCTTTAAAGAAGTCGGCAAATTTTTGAGAA
TGTGAGGTGGTAGTTGCCATTTGGAGAGGGAGGTATGCGCCCTTTCATTT
TCGACGGATATTGTTGGCGCCCGACTCGAAAAAGCTTAGTATCAAATAAA
CTGTGCTCCCATATTTACTTGCGAACCAAtaatataaagaaaatttgaca
tacaCTGAAGGCAAGAGCTTGGCTGTTTTTAGTTCGTTTTggtagaatct
tttgtaatattttttgcttgttttagaattatttcAATACCTTAACTTgc
actttttttaagaatagGTAAtctgaaatttgtcgttctttatgaagttt
gtcgttctttttgtctacacgcttttttttataagaatggtgtaaatcca
tttcatcatggatattcgtaacttttttgggaaaatcatcctaaaa Coding sequence (CDS) from alignment at scaffold_167:307247..309292 >TCONS_00050150 ID=TCONS_00050150|Name=TCONS_00050150|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_167:307247..309292 (Clytia hemisphaerica)
ATGATGAACCATTTTGTGTTAAAGATAGCTGGATACCAACCTTCTATATT
CTATTGGTTTGATGTCCGGACTTTCCAAAAGTTCCAAGAAGCCTTACGAA
AGAGATTCAGAATCGATCCTTTAAAAGAGTTTGTGGTTTATCATGGCGAA
TGTTTGGTCACTGAAGAactttatgagactttgtatgAGAATCGATTGTC
TGAGAAAGTGAAATTTGAAGCTAGGGGTGATCTTATGGACAACATCAGTA
AGGAACGAATGGAGATGTTAAAACGAAGTGACTGTACAGTCAAAGTATAC
CGGACAACTACATTGACTTCAAAGAATATCGTTTACGAATTCAAACCACA
TATATCATCCACTATTCGAGAATTGAAGCTTGCACTTCAAGCAAATTTGA
GAATCGATTTGATATCAGAAGGTCTTCATCTTTCAGATATTGATGCACCT
TCAGGACATTCTCAAATCAGATTACTGTTACCACCGCATTATTGTTCTTT
CTTGATTGATGAACAACCTATTGTTGATCTATTACTTGATTTACCACGTG
CTCAACCAATGGAATTGAAAGTTCTATTCCCTTTGAACAAAGAAAGCATC
AAGAAATATAAGATGAAAGTCATACCATTGATTGAGATCCAGATTTCAGA
TCTGAATCCAATGTCTTTGGACATTTTGTTACCAAAACTAGGTACGTTTA
GTATGATTGACTTGAAATACTGGATTCAGAAGAAATTCAAGGATCCAATT
AATGAGCAAGTGTTCACTCTAAGTGGTCTGGAAATGACTGATGATAGTTT
TGGATTAATGATGGTAGATAAAGACGCGGGACAATATAAAATCGATGTGA
GCATTTTTAGTACGGAAGATGTAGACCTTCAAAAAGTGtatcagcaaaat
aagataaaaacaaTGGTGTCGGCAAGAATCTTTGGATCGATCAGCTCTGG
TGATGTACTGGCAACTTATCATTTTCGTGGTCAAGAGGGTCAATCCATTG
GGAATTATCTAGAGGAGATATTTAAAATACCAATCAAAAACCAAATAATG
TTTTATAATAATATTAGAATAACGCAAGAACAATTAATCAAGCAGTTAAA
ATCCAAACAAAATATTCGTAGGATTGTCCAGTCTTTGGAAGTGATTTTAT
CTGTCCAAGCAGATGATAATGAAACAGAGCTCTTACCAATCATTCAGGAA
TTGAATCTAAAACGATTAAGGTCAGTCATTGTGAAGCATCCTACCAAAGA
TACAATATTTTTGGATTTACAATTACAATTTTTGGATTTGGATTTACAAG
TCAAAGCTAAAATTGTCTTGGAAATCGAAAGAAAAGGAGTTGTAACAGAA
ATCGAACGACATCTCACTACAGAATGGGCGGATGGTAGAATTGAGGATTT
GTTATCAGTGACCGAATACAATAATAGAGCTTATGGGTATCTAACTATCG
ATGAGCAACATTTTGGTAGTGGAGGATTAACATTAGAGACACCTTTTAAA
AATGTTGGCCGTCGTAAAATACGTTTCCTTGTTAGCCCACCCAAAATTAA
TCGGATATTTCCATGGGGTTTTAGATACCGTCCACGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050150-exon-scaffold_167-1491911889:307247..309292 | TCONS_00050150-exon-scaffold_167-1491911889:307247..309292 | Clytia hemisphaerica | exon |
| TCONS_00050150-exon-scaffold_167-1510915933:307247..309292 | TCONS_00050150-exon-scaffold_167-1510915933:307247..309292 | Clytia hemisphaerica | exon |
| TCONS_00050150-exon-scaffold_167-1575043694:307247..309292 | TCONS_00050150-exon-scaffold_167-1575043694:307247..309292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_167 | supercontig | scaffold_167:307247..309292 . |
Blast
The following BLAST results are available for this feature:
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