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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049880 ID=TCONS_00049880|Name=TCONS_00049880|organism=Clytia hemisphaerica|type=transcript|length=1891bp
TGAAGAATTAGttagaaaatttgattaaatataaaaataatttgaatatc
aatttgcaaaaataattattcatcAAATGCATTGCACATTGGCATACTAT
ATGGGAcattgaaaatgatgatgagAGATATTACTGACTGTGGTGTATCT
TTTTGTCATGGTTAACTGTTTCTACAATTTGATTGACTTCTGGAAAGGTC
TTTTCAAAAATAGTGAAACTAAAGGaaatccaCGCACCGACAGTATGAAC
GGGTCGGCAAACAATTACGGCGTGCGGAACGGGAATGGCCGGTTGGAATT
AGAATTACTGGAGAATATACATGAAAAAAATCGAAGTGAGGGGTTCACAT
ACGTCGATCGATCGTTACTCGAACAAAACAACAATAGCAAGTTAAACGAT
GACGAAGATAATTATTGGCACGAAATTCAATTAAATCGTAAAATGatcat
caaaaagaaaattgaagaatacGTTAATACGTTCACGGTTCACGGGCTCA
CGAAAGTATTCACGGGTGAAAGAGTTGAGTCTGCATTTTGGCTGGTCATG
CTTTTTGGTGGTATATTATTATCAGTTGTCATTGTGCATGGGCTTGTtac
aaaattcttaaaacatgGAATTTACACGGAAATTCGGTCTGAGATTACAG
ACGAGAATTTTTTCCCGAGTGTAACATTTTGCGAGAATCAGCTACTGATT
GATAACTATTTTTCGTACTGTGGCGTTCCGCCTAGAGTTCAACATATCAA
CCATACAGTGGTTTGTGACTACAAAATGAAATACCGCCAAGCGCCCATGA
ATGAATCTCGAAATAAATTCTGGTATAACGGTTTATTTAACGTTACAAAA
TGTGAAACCTGGGGAGGTAAGAAATGCGCCAATAGtgattatttcaaaac
tatgaaaCATTTTAATCATTCATGCATCACTTGGAATTATGCTGGTAATT
TAAGTGATATTTATAGTCATGTTGACATCGAGTTTGAGTTTAAGCCACCA
TCTTGGCTTAACAAAGATGAGGTCATAATCGCTGTACCACATGATCATAC
AATACATGAAATTGATATTACCAACAAAGTGGACATCGAACCATATAAAA
CATATGAAATCAAATTAGACAAaacagaaatcaaaagactACCACACCCT
TTTCCCTCTAACTGCTCTAATAGCAAAGGAGAGGATATTTTTCCTGGTAG
ATATACACGACGCTCGTGTATTGAATCTCACAACTATATCGAAATGTATA
AAAAATGTGGGGACACTTTGGATTACGTACGCCAGTTTATTCCACACGCC
ATTAAGAAGCGTTACAAAGGGAATAAAACCATTAAAGAAGCAGAAATGTG
TATTTGGAGATTTGGGAAAGGAGAAACACAAAAAACCAAAAACTGTGCTT
TCCCCTGTACTGATTTAGACTTAGGGGTGATGCCCTCATTTAACGAACGC
AAAAAGGGTAAATCGCAGACCAAATACCGTATAAGTTTACAATACCAACG
GGTTGACGCTTATAAGGTTATGGAAGAAAAAGAGCTCTACCCTTGGGACC
AAATGGCATGTGAGATTGGAGGTCTTATCGGGTTGGCTATTGGTGCATCC
ATAATTTCTTTGGTAGAGGTTATAGTGTACGCATTTTTGGTGATTGTTAA
TAAAGTGATCTGAGGAAAATTAGCCGCTAACAAAGGCATTTAACTAATAT
GAACAAAACGATATAGCAAAAACGACCTTTTGGAAGGAAAATAGGAGCTg
aagaaatttccaaattctTTTGGAAAAGTCCTGCGTCATAAATTGatact
agccgtcccggcgtcgtccgagacgacttcttactccttttaatacgctc
gcttcgctcgcttttctatttttcagaaacttgtagggaTT Run BLAST on NCBI transcript from alignment at scaffold_167:351875..359997+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049880 ID=TCONS_00049880|Name=TCONS_00049880|organism=Clytia hemisphaerica|type=transcript|length=8123bp|location=Sequence derived from alignment at scaffold_167:351875..359997+ (Clytia hemisphaerica)
TGAAGAATTAGttagaaaatttgattaaatataaaaataatttgaatatc
aatttgcaaaaataattattcatcAAATGCATTGCACATTGGCATACTAT
ATGGGAcattgaaaatgatgatgagAGATATTACTGACTGTGGTGTATCT
TTTTGTCATGGTTAACTGTTTCTACAATTTGATTGACTTCTGGAAAGGTC
TTTTCAAAAATAGTGAAACTAAAGGGTAAGGatgtgattgattgattgat
tgattgatcgatCGATCGATTGATTGATTATAGCTTATATCTAATCCTGA
ACAAACTAACGACTTANTGATTGATTATTTGTATGACACTAGTCTATATC
TAAGCCTGAAGAAACTAACTAACGACTTATTTAAATAACACTGTGTTAGA
CAGAAAACATTTTTGGTCAACAGTTTTGCATACCCCCTCAGTAGCGTTGC
CAGGGGATGTCAGAAAATTTATGTAGGAGAGACAAAGTAACTAACTATTc
ataatttaaaagaaaattacttCGTAACAAAAGtgtgctctcctacacaa
atttccGACATCCCTGAGAACGCTACTGCCCCTACCATAGACAACAAACT
AACCTTCCTATTCAAAACCATCAATGTATGAATCGAATTCGTACATATTC
GAACATGGGGATATCACACACAATCTGTAAACATATATTCATCCAAATTC
GggatgaaaaaattgtaaacattttataaatcaaaaacaatATATTCAAG
TGGAATTGATAATAAATTTTCTGACTCACCACGGGGTAAATTCACAATCT
ATCAGAATACCAATTTTCATCAATTTAAATAAATTCATCGTCTGTAAAGT
ATTAAAATTTATTCCTTTGTAACATCACTCAAAAACAgagtgaaatgaaa
aaatagtttatagtattatttcaggATAATGTTTGATAAACATTAAAACC
GAAATAAAATCGTAAATATGGTATGTTTCGGTTGCAATTATTGCAATCAT
TAAAACTGTTTACGAATTtactttcttattttttttagaaatccaCGCAC
CGACAGTATGAACGGGTCGGCAAACAATTACGGCGTGCGGAACGGGAATG
GCCGGTTGGAATTAGAATTACTGGAGAATATACATGAAAAAAATCGAAGT
GAGGGTAAGATGTTGTTTTCGTATACCAGATATGTTTTTTGGTAGAAATC
GAGTAGAATCTTTAGGTATCGAAAAATGATTTTCTGAGTTTCCGTTAATG
TTGGAGAAAATTTAGACCTTAGCTCCGGTTAAGACTGCCGACTTTCTGCT
CTGTCTTCTTTTCCAAATGTTAGAGTTGATAGAAAGTGGGcagaaaattt
gaagtcagaaTCTCTGCTTGAAAAGGATTCAAAGaaatcattgcattgac
gtcaaaagagtacaatgcattgactttagacagccaactttctgcccact
TTAATGAACAATTAAAATAGGCAGGGCAAAACGTGAGTCCTTTATACCAG
AGCTTACTTTCCAAGACAAACAAAAAACCGTATTTAATTTCCGAATTCAT
TTATCTTGGTAGAGGGGAAGTAGAGCGAAGTGACACAATTTCAATTAAGC
TTGATATCAAAATATTTGGCTAAAACATAATCAGTTTTGGGAAAATTTAC
GTTTCGAATATATCATTAAACATTCTGGAGTCATAGACCTAATTTAAACG
GCCAACTTTCTGTCTCCGTTCGCTGTGAGAGACGGCAGAAGATCGACGGA
AAATCGGCAGTTGAAATCTTTGCTTGGGAAAactgaaagaagtcattgca
ttgacgacAAAAGACATCGCATTGgctttagacagccaactttcTGCCGA
CTTTGTCAAAAATGAGGGAAGGCAAGGCATTAAGTcaaccgtctaaacta
gagctaagttgATGTCATGAAAGGGTTAAGTGATATCCATTTTCCCAGAT
TTCCCAGGGTCTATCTGAACGTTATCACCATAGATTtaaaaagcccgaag
ggctagatgtcgggctttaaaccatcgcaggcaaaaaaaaagtgaatatc
ggaaaaaatatttttgccattgttttcgaaaaccagcgaagcttctgatt
gataaagcgctgaaattttattgtaatgtttcgtgacttaggtaggattt
cctacctaactacggcacacttttcagcaaaagcttgACATCtatagccc
tttgggcttataAGTCTATGGTTATCACTCAATTTTTTACTATGTATCTA
TATTTGCTTTCATAGGGTTCACATACGTCGATCGATCGTTACTCGAACAA
AACAACAATAGCAAGTTAAACGATGACGAAGATAATTATTGGCACGAAAT
TCAATTAAATCGTAAAATGatcatcaaaaagaaaattgaagaatacGTTA
ATACGTTCACGGTTCACGGGCTCACGAAAGTATTCACGGGTGAAAGAGTT
GAGTCTGCATTTTGGCTGGTCATGCTTTTTGGTGGTATATTATTATCAGT
TGTCATTGTGCATGGGCTTGTtacaaaattcttaaaacatgGAATTTACA
CGGAAATTCGGTCTGAGATTACAGACGAGAATTTTTTCCCGAGTGTAACA
TTTTGCGAGAATCAGCTACTGATTGATAACTATTTTTCGTACTGTGGCGT
TCCGCCTAGAGTTCAACATATCAACCATACAGTGGTTTGTGACTACAAAA
TGAAATACCGCCAAGCGCCCATGAATGAATCTCGAAATAAATTCTGGTAT
AACGGTTTATTTAACGTTACAAAATGTGAAACCTGGGGAGGTAAGAAATG
CGCCAATAGtgattatttcaaaactatgaaaCATTTTAATCATTCATGCA
TCACTTGGAATTATGCTGGTAATTTAAGTGATATTTATAGTCATGTTGAC
ATCGAGTTTGAGTTTAAGCCACCATCTTGGCTTAACAAAGATGAGGTCAT
AATCGCTGTACCACATGATCATACAATACATGAAATTGATATTACCAACA
AAGTGGACATCGAACCATATAAAACATATGAAATCAAATTAGACAAaaca
gaaatcaaaagactACCACACCCTTTTCCCTCTAACTGCTCTAATAGCAA
AGGAGAGGATATTTTTCCTGGTAGATATACACGACGCTCGTGTATTGAAT
CTCACAACTATATCGAAATGTATAAAAAATGTGGGGACACTTTGGATTAC
GTACGCCAGTTTATTCCACACGCCATTAAGAAGCGTTACAAAGGGAATAA
AACCATTAAAGAAGCAGAAATGTGTATTTGGAGATTTGGGAAAGGAGAAA
CACAAAAAACCAAAAACTGTGCTTTCCCCTGTACTGATTTAGACTTAGGG
GTGATGCCCTCATTTAACGAACGCAAAAAGGGTAAATCGCAGACCAAATA
CCGTATAAGTTTACAATACCAACGGGTTGACGCTTATAAGGTTATGGAAG
AAAAAGAGCTCTACCCTTGGGACCAAATGGCATGTGAGATTGGAGGTCTT
ATCGGGTTGGTTATTGGTGCATCCATAATTTCTTTGGTAGAGATTATAGC
GTACGTATTTTTGGTGATTgttaataaatttatttgacgGAAATGGAAGA
GTAGAAACACCAGTatgatggttttggtgatttAAGATACGGTGAGAAAC
GTATAAATGTGCCACGAATAGATGAAACTAAAAGCCTTGGTTGAATGCCA
TGCAAACGATTTGAGTTAGTAACTTGCTCATCTAATGTCGTCTTTTATCA
GGCATTAGTTTAGCAAGTCGAAAAATACGAAAAAGGTAAAAGAAGcgaaa
aatatgtacaaagaaaagtGGATAAAGAGATGTACTCTTTTGAAATGCGA
TGCAATCTGGTTAAATTCATTGAAAGAAGATGTACTACTTGATTGATGTT
CTCAATTAATATAAGCAAAAAGAAACTAAGTTGGTGGGTTGAATTGCTtt
aacaaaaattggaaaataatcCAAGAGACCTACCTTGAAGTCTAGCAAAA
TATGATATGGTATTATCACAAAAGTAAGACTCGCCAAAAAACAGTACAAT
GCTAAATtatattttgaacaaaaaatatgattGAAAATATATGACGATAT
ACATGGCTTTTGGAAGGGGAAACCAAAAACTCAATAACTTATCAAATTTA
AGTTTTCTGGACTAATACTTAATGCAATGGAAAAAgtttttcgaattttg
tttattcatgatatgcaccactgcaatgacaaaattatgcaacttttctg
tttttgttccagccaacacgtcactttttctattgtttaagtgacagaag
actctccagtcgtggtgcatatcatgaatagatttaCATCACTTGTGCGA
AGGTCTACCTTTCTTGCACTCAATAGAGTGTAACATTCTAGTACTTGAAA
GCTTCATGTAGTTCTTCTTTCANAGGTCTACCTTTCTTGCACTCATTAGA
GTGTAACATTCTACTACTTGAAAGCTTCATGTAGTTCTTCTTTCAACAGT
CATgtatgaatatttttatttcataataAGAAGAatctttgtatattttt
acgTCTGGTAAAACTTCATAACAAGaaaatctcgcgaaaatttagttttt
accCTTAAAAGAACTGATCTTCGCGGGAACgaattttcgcgtttttgggt
gTGTCTACCGTAAAAATTAGGTcagcgaaatgcaatttttactatTAATT
CTCGAAAGGTccaggaaaatgaaagaatttcgaCAAAAAGTGGGTGTCAA
CCGCGAAAATCAGTTCAGCAAAAAACGCAAATTTCGTACCCTCACACCGC
CAAAATAAGTTAGCGAGAAAATTAGTGTCCTTAAGGTATTTCATATGACA
TAATGGAATTTTCTTATGTTAATTTGAATGCGGTGAAGTGAATTTTGACC
GACGTTTGTCGAAATATCGATGAAATTTATCAACTAAATCCAGCATAGGT
GCGAAGTTTTCTTGGGATAAAGTTTTAAGTAAAAGAcactaaaaatttta
tttttaaaacttaattttcttaTAGGAAAAATACGGTAGATCTAGTGTGA
TTTTCATAAAATAGTATAGAGAAAAGTTGAGGGCGAAAATCATTTCAAAT
CCAGCCTTGAGTTTATCATTTCTTTAATGTTTTTACACAGAACTTAGTTT
GAACACTTCCTTTATAAAGGAAGGATATGAGCTAGCATGAAGATGGGGAT
GAGAAATTTTACTAAGGAAAGGAGGACAACAAGGGGGCCTAAGAAACGGT
TGACATCGAGTCCTCTTTTATTTGTTCAGGATTCTGTACTTGCCTGGAAA
TTTCCGTTTCTAGagaaattttagtgttttttgaTTACGATAAGAAACTA
AGGCTTCAATGGCTAAAAAAagaagctaagaacattttaatgctttGTGG
ACTTTTAAAACACCAGATTTCTTAGAAGAATGGACAATATTCAAATATCA
TATACAAATTATTCatcaaatggtgaaaataagaacatgttaagaacatt
tttaggtttaaaagccaaaaaattaagaacatccgaaggcttaaaatttt
ttggatattcttataaaaaaagtgtataaatAAGTTTAGAGTGATGGTAG
CAAGGTAACTCAGTATTTTGGAGGTGTCAAGGCGTGAGTTTAAAAGGGGC
TCAAACATAAATCATAATTTGCAGATTTGCAGATGGTGCAATTTCATAGC
AGTGATCGAAGCTCCTCCATATAATTATCTTTATTCCCTTTCTTTACAAA
GTCAATCCTTTTATCGGCTTACAGTAGGTTTTATCAATGATGATGATATT
AATTTTAATACCCTTTCAAATTGCCTACTTAAAGTGAAAACGAGGACTTT
TAACTTTCCCTCTTTGATAAATCTTTGAATGAATAGTTGATGCTTTTTGT
TGAGACTAAATCACTAGTTAAAACTAAAACGCAGTACGTGCAAATCCTAT
CATCAATATTGAGATTAAAAGGTATTGATCACAAAATTGCTTTTAGTTAA
ATAATGTCATGACTATCACATACTAAGCAAGGACAGACTAAACTTGTGGT
TTGAATTTGTAAACTGTAGAGAGCTCGTTTGGAAGAAAAGTCAAATCAAT
ATAATGGACCAAAATTCAGGTAAGCTTTTTAATAACATACGAAATACTAA
TGTATATTCTTTTGAAATCAACGAGGAAGGGATTAAATAAGCTCTAAGAT
AGTAAGTGCGGAGCTGTCATTATAAGCTGTCATAGGCACACAAGTTTCCG
ACTGCATTCAAGGGCGATACGAAGactcccttttctctagctgtctactC
GAAGATAGGGCAATGAGCAACTCCTTTCCcaggatttctccacttaccct
tgatctgtctctttaattgctgagcatcaagtaaAGAGGCattaagtacc
attttgggaatcttccAGTATGACCTTGGATGGGGGTCGAACCACCCACA
ACTTGCGCACCGAAACTGGAAGCTCTATCTTCAATCTGGCAGTCAAAGCT
GGCATACAGAGTTATAATAGTATATATAATAAATGTaaattgtaataaaa
tatttcttatctAGGATCCCGGTATGTGGAAAGTTCTCTGATGACATTGA
TCGAAGATGAAGACGATAATAAGTGGCATGAACAGCAATTAAGTCGTAAA
ATGGTCATTAAAACGAAAACAGAAGAATACATTAACACTTTCACCTTCCA
TGGTCTTACCAGAGTGTTCAAAGGTGAACGGATCGAATCTGTATTTTGGT
TATTTATGATATTAGGTGGTGTGTCATTATCGGGAGTTGTCGTTAATCGC
CTAGTTACCAGAtatcaaaaacatgaaatttacaCGGAGATTCAAACTAA
AATCACAGATGAAAACTTCTTCCCAAGTGTGACATTTTGTGAGAATCAGC
TATTAATTGATAGCTATTTTTCATATTGTGGCGTTGCACCGAGACATGGA
CATGAAAATCATCACAAAGTTTGTGACTACATAATGAAAGAACCGGAAGA
ATCCATCGAGGAATCTCGAAATAAATTCTGGTATAACGGTCTATTTAACA
TTACAAAATGCGAAACATGGGGAGGCAAGAAATGCGCCAGTAGTGATTAT
TTCAAGACTCTAAACCATTTCAACCATTCATGTATCACTTGGAATTATGC
AGGTAATTTGAGTGATGTCTATAGCCATGTTGATATTGAGTTTGATGTTA
AGCCACTATCTTGGCTTGGTAAAAACGAAGGTATACGAGAACATTTACGA
GAAGGTATATTTGCACTGCCACATGACCATAGAATATACGAAATTGACAT
AGTGAACAAATTAGACATTGAACCGTATAAAACATATGAAATCAAATTAG
ACACAACCGTTATAAAAAGACTACCACACCCTTTCCCCTCTAAGTGCGCA
AGTAGTAAGGGTGATGAcatttttcctggaaaataCACGCGAAGATCATG
CATTGAATCACACAACTATATCGAAATGTACAAAAAATGTGGGGACACTT
TGGATTACGTACGCCAATTTATTCCACCTGATATTAAGAAACAATACAAA
GGGAATAAAACTATTAGAGAAGCAGAAAAGTGTGTTTGGTTATTTGGGAA
AGGAGAAacacaaaaaactaaaaactgtAATCTTCCTTGCCAAGAACTGC
AATTGGCGATAACGACTTCATCTAGCGAACGCAAAAAGGACAAATCACGA
ACCAAGTACCGTATAAGTTTGCAACATCAACTGATTGATGCTTATAAGGT
TATGGAAGAGAAAGAGCTATATCCTTGGGACCAAATGGCATGTGAAATTG
GAGGTCTTATCGGGTTGGCTATTGGTGCATCCATAATTTCTTTGGTAGAG
GTTATAGTGTACGCATTTTTGGTGATTGTTAATAAAGTGATCTGAGGAAA
ATTAGCCGCTAACAAAGGCATTTAACTAATATGAACAAAACGATATAGCA
AAAACGACCTTTTGGAAGGAAAATAGGAGCTgaagaaatttccaaattct
TTTGGAAAAGTCCTGCGTCATAAATTGatactagccgtcccggcgtcgtc
cgagacgacttcttactccttttaatacgctcgcttcgctcgcttttcta
tttttcagaaacttgtagggaTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049880-exon-scaffold_167-1491911889:351875..352099 | TCONS_00049880-exon-scaffold_167-1491911889:351875..352099 | Clytia hemisphaerica | exon |
| TCONS_00049880-exon-scaffold_167-1510915933:351875..352099 | TCONS_00049880-exon-scaffold_167-1510915933:351875..352099 | Clytia hemisphaerica | exon |
| TCONS_00049880-exon-scaffold_167-1575043694:351875..352099 | TCONS_00049880-exon-scaffold_167-1575043694:351875..352099 | Clytia hemisphaerica | exon |
| TCONS_00049880-exon-scaffold_167-1491911889:352913..353028 | TCONS_00049880-exon-scaffold_167-1491911889:352913..353028 | Clytia hemisphaerica | exon |
| TCONS_00049880-exon-scaffold_167-1510915933:352913..353028 | TCONS_00049880-exon-scaffold_167-1510915933:352913..353028 | Clytia hemisphaerica | exon |
| TCONS_00049880-exon-scaffold_167-1575043694:352913..353028 | TCONS_00049880-exon-scaffold_167-1575043694:352913..353028 | Clytia hemisphaerica | exon |
| TCONS_00049880-exon-scaffold_167-1491911889:354140..355369 | TCONS_00049880-exon-scaffold_167-1491911889:354140..355369 | Clytia hemisphaerica | exon |
| TCONS_00049880-exon-scaffold_167-1510915933:354140..355369 | TCONS_00049880-exon-scaffold_167-1510915933:354140..355369 | Clytia hemisphaerica | exon |
| TCONS_00049880-exon-scaffold_167-1575043694:354140..355369 | TCONS_00049880-exon-scaffold_167-1575043694:354140..355369 | Clytia hemisphaerica | exon |
| TCONS_00049880-exon-scaffold_167-1491911889:359678..359997 | TCONS_00049880-exon-scaffold_167-1491911889:359678..359997 | Clytia hemisphaerica | exon |
| TCONS_00049880-exon-scaffold_167-1510915933:359678..359997 | TCONS_00049880-exon-scaffold_167-1510915933:359678..359997 | Clytia hemisphaerica | exon |
| TCONS_00049880-exon-scaffold_167-1575043694:359678..359997 | TCONS_00049880-exon-scaffold_167-1575043694:359678..359997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:351875..359997 + |
Blast
The following BLAST results are available for this feature:
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