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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049881 ID=TCONS_00049881|Name=TCONS_00049881|organism=Clytia hemisphaerica|type=transcript|length=2194bp
aaataatttgaatatcaatttgcaaaaataattattcatcAAATGCATTG
CACATTGGCATACTATATGGGAcattgaaaatgatgatgagAGATATTAC
TGACTGTGGTGTATCTTTTTGTCATGGTTAACTGTTTCTACAATTTGATT
GACTTCTGGAAAGGTCTTTTCAAAAATAGTGAAACTAAAGGaaatccaCG
CACCGACAGTATGAACGGGTCGGCAAACAATTACGGCGTGCGGAACGGGA
ATGGCCGGTTGGAATTAGAATTACTGGAGAATATACATGAAAAAAATCGA
AGGTTCACATACGTCGATCGATCGTTACTCGAACAAAACAACAATAGCAA
GTTAAACGATGACGAAGATAATTATTGGCACGAAATTCAATTAAATCGTA
AAATGatcatcaaaaagaaaattgaagaatacGTTAATACGTTCACGGTT
CACGGGCTCACGAAAGTATTCACGGGTGAAAGAGTTGAGTCTGCATTTTG
GCTGGTCATGCTTTTTGGTGGTATATTATTATCAGTTGTCATTGTGCATG
GGCTTGTtacaaaattcttaaaacatgGAATTTACACGGAAATTCGGTCT
GAGATTACAGACGAGAATTTTTTCCCGAGTGTAACATTTTGCGAGAATCA
GCTACTGATTGATAACTATTTTTCGTACTGTGGCGTTCCGCCTAGAGTTC
AACATATCAACCATACAGTGGTTTGTGACTACAAAATGAAATACCGCCAA
GCGCCCATGAATGAATCTCGAAATAAATTCTGGTATAACGGTTTATTTAA
CGTTACAAAATGTGAAACCTGGGGAGGTAAGAAATGCGCCAATAGtgatt
atttcaaaactatgaaaCATTTTAATCATTCATGCATCACTTGGAATTAT
GCTGGTAATTTAAGTGATATTTATAGTCATGTTGACATCGAGTTTGAGTT
TAAGCCACCATCTTGGCTTAACAAAGATGAGGTCATAATCGCTGTACCAC
ATGATCATACAATACATGAAATTGATATTACCAACAAAGTGGACATCGAA
CCATATAAAACATATGAAATCAAATTAGACAAaacagaaatcaaaagact
ACCACACCCTTTTCCCTCTAACTGCTCTAATAGCAAAGGAGAGGATATTT
TTCCTGGTAGATATACACGACGCTCGTGTATTGAATCTCACAACTATATC
GAAATGTATAAAAAATGTGGGGACACTTTGGATTACGTACGCCAGTTTAT
TCCACACGCCATTAAGAAGCGTTACAAAGGGAATAAAACCATTAAAGAAG
CAGAAATGTGTATTTGGAGATTTGGGAAAGGAGAAACACAAAAAACCAAA
AACTGTGCTTTCCCCTGTACTGATTTAGACTTAGGGGTGATGCCCTCATT
TAACGAACGCAAAAAGGGTAAATCGCAGACCAAATACCGTATAAGTTTAC
AATACCAACGGGTTGACGCTTATAAGGTTATGGAAGAAAAAGAGCTCTAC
CCTTGGGACCAAATGGCATGTGAGATTGGAGGTCTTATCGGGTTGGTTAT
TGGTGCATCCATAATTTCTTTGGTAGAGATTATAGCGTACGTATTTTTGG
TGATTgttaataaatttatttgacgGAAATGGAAGAGTAGAAACACCAGT
atgatggttttggtgatttAAGATACGGTGAGAAACGTATAAATGTGCCA
CGAATAGATGAAACTAAAAGCCTTGGTTGAATGCCATGCAAACGATTTGA
GTTAGTAACTTGCTCATCTAATGTCGTCTTTTATCAGGCATTAGTTTAGC
AAGTCGAAAAATACGAAAAAGGTAAAAGAAGcgaaaaatatgtacaaaga
aaagtGGATAAAGAGATGTACTCTTTTGAAATGCGATGCAATCTGGTTAA
ATTCATTGAAAGAAGATGTACTACTTGATTGATGTTCTCAATTAATATAA
GCAAAAAGAAACTAAGTTGGTGGGTTGAATTGCTttaacaaaaattggaa
aataatcCAAGAGACCTACCTTGAAGTCTAGCAAAATATGATATGGTATT
ATCACAAAAGTAAGACTCGCCAAAAAACAGTACAATGCTAAATtatattt
tgaacaaaaaatatgattGAAAATATATGACGATATACATGGCTTTTGGA
AGGGGAAACCAAAAACTCAATAACTTATCAAATTTAAGTTTTCT Run BLAST on NCBI transcript from alignment at scaffold_167:351909..356032+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049881 ID=TCONS_00049881|Name=TCONS_00049881|organism=Clytia hemisphaerica|type=transcript|length=4124bp|location=Sequence derived from alignment at scaffold_167:351909..356032+ (Clytia hemisphaerica)
aaataatttgaatatcaatttgcaaaaataattattcatcAAATGCATTG
CACATTGGCATACTATATGGGAcattgaaaatgatgatgagAGATATTAC
TGACTGTGGTGTATCTTTTTGTCATGGTTAACTGTTTCTACAATTTGATT
GACTTCTGGAAAGGTCTTTTCAAAAATAGTGAAACTAAAGGGTAAGGatg
tgattgattgattgattgattgatcgatCGATCGATTGATTGATTATAGC
TTATATCTAATCCTGAACAAACTAACGACTTANTGATTGATTATTTGTAT
GACACTAGTCTATATCTAAGCCTGAAGAAACTAACTAACGACTTATTTAA
ATAACACTGTGTTAGACAGAAAACATTTTTGGTCAACAGTTTTGCATACC
CCCTCAGTAGCGTTGCCAGGGGATGTCAGAAAATTTATGTAGGAGAGACA
AAGTAACTAACTATTcataatttaaaagaaaattacttCGTAACAAAAGt
gtgctctcctacacaaatttccGACATCCCTGAGAACGCTACTGCCCCTA
CCATAGACAACAAACTAACCTTCCTATTCAAAACCATCAATGTATGAATC
GAATTCGTACATATTCGAACATGGGGATATCACACACAATCTGTAAACAT
ATATTCATCCAAATTCGggatgaaaaaattgtaaacattttataaatcaa
aaacaatATATTCAAGTGGAATTGATAATAAATTTTCTGACTCACCACGG
GGTAAATTCACAATCTATCAGAATACCAATTTTCATCAATTTAAATAAAT
TCATCGTCTGTAAAGTATTAAAATTTATTCCTTTGTAACATCACTCAAAA
ACAgagtgaaatgaaaaaatagtttatagtattatttcaggATAATGTTT
GATAAACATTAAAACCGAAATAAAATCGTAAATATGGTATGTTTCGGTTG
CAATTATTGCAATCATTAAAACTGTTTACGAATTtactttcttatttttt
ttagaaatccaCGCACCGACAGTATGAACGGGTCGGCAAACAATTACGGC
GTGCGGAACGGGAATGGCCGGTTGGAATTAGAATTACTGGAGAATATACA
TGAAAAAAATCGAAGTGAGGGTAAGATGTTGTTTTCGTATACCAGATATG
TTTTTTGGTAGAAATCGAGTAGAATCTTTAGGTATCGAAAAATGATTTTC
TGAGTTTCCGTTAATGTTGGAGAAAATTTAGACCTTAGCTCCGGTTAAGA
CTGCCGACTTTCTGCTCTGTCTTCTTTTCCAAATGTTAGAGTTGATAGAA
AGTGGGcagaaaatttgaagtcagaaTCTCTGCTTGAAAAGGATTCAAAG
aaatcattgcattgacgtcaaaagagtacaatgcattgactttagacagc
caactttctgcccactTTAATGAACAATTAAAATAGGCAGGGCAAAACGT
GAGTCCTTTATACCAGAGCTTACTTTCCAAGACAAACAAAAAACCGTATT
TAATTTCCGAATTCATTTATCTTGGTAGAGGGGAAGTAGAGCGAAGTGAC
ACAATTTCAATTAAGCTTGATATCAAAATATTTGGCTAAAACATAATCAG
TTTTGGGAAAATTTACGTTTCGAATATATCATTAAACATTCTGGAGTCAT
AGACCTAATTTAAACGGCCAACTTTCTGTCTCCGTTCGCTGTGAGAGACG
GCAGAAGATCGACGGAAAATCGGCAGTTGAAATCTTTGCTTGGGAAAact
gaaagaagtcattgcattgacgacAAAAGACATCGCATTGgctttagaca
gccaactttcTGCCGACTTTGTCAAAAATGAGGGAAGGCAAGGCATTAAG
TcaaccgtctaaactagagctaagttgATGTCATGAAAGGGTTAAGTGAT
ATCCATTTTCCCAGATTTCCCAGGGTCTATCTGAACGTTATCACCATAGA
TTtaaaaagcccgaagggctagatgtcgggctttaaaccatcgcaggcaa
aaaaaaagtgaatatcggaaaaaatatttttgccattgttttcgaaaacc
agcgaagcttctgattgataaagcgctgaaattttattgtaatgtttcgt
gacttaggtaggatttcctacctaactacggcacacttttcagcaaaagc
ttgACATCtatagccctttgggcttataAGTCTATGGTTATCACTCAATT
TTTTACTATGTATCTATATTTGCTTTCATAGGGTTCACATACGTCGATCG
ATCGTTACTCGAACAAAACAACAATAGCAAGTTAAACGATGACGAAGATA
ATTATTGGCACGAAATTCAATTAAATCGTAAAATGatcatcaaaaagaaa
attgaagaatacGTTAATACGTTCACGGTTCACGGGCTCACGAAAGTATT
CACGGGTGAAAGAGTTGAGTCTGCATTTTGGCTGGTCATGCTTTTTGGTG
GTATATTATTATCAGTTGTCATTGTGCATGGGCTTGTtacaaaattctta
aaacatgGAATTTACACGGAAATTCGGTCTGAGATTACAGACGAGAATTT
TTTCCCGAGTGTAACATTTTGCGAGAATCAGCTACTGATTGATAACTATT
TTTCGTACTGTGGCGTTCCGCCTAGAGTTCAACATATCAACCATACAGTG
GTTTGTGACTACAAAATGAAATACCGCCAAGCGCCCATGAATGAATCTCG
AAATAAATTCTGGTATAACGGTTTATTTAACGTTACAAAATGTGAAACCT
GGGGAGGTAAGAAATGCGCCAATAGtgattatttcaaaactatgaaaCAT
TTTAATCATTCATGCATCACTTGGAATTATGCTGGTAATTTAAGTGATAT
TTATAGTCATGTTGACATCGAGTTTGAGTTTAAGCCACCATCTTGGCTTA
ACAAAGATGAGGTCATAATCGCTGTACCACATGATCATACAATACATGAA
ATTGATATTACCAACAAAGTGGACATCGAACCATATAAAACATATGAAAT
CAAATTAGACAAaacagaaatcaaaagactACCACACCCTTTTCCCTCTA
ACTGCTCTAATAGCAAAGGAGAGGATATTTTTCCTGGTAGATATACACGA
CGCTCGTGTATTGAATCTCACAACTATATCGAAATGTATAAAAAATGTGG
GGACACTTTGGATTACGTACGCCAGTTTATTCCACACGCCATTAAGAAGC
GTTACAAAGGGAATAAAACCATTAAAGAAGCAGAAATGTGTATTTGGAGA
TTTGGGAAAGGAGAAACACAAAAAACCAAAAACTGTGCTTTCCCCTGTAC
TGATTTAGACTTAGGGGTGATGCCCTCATTTAACGAACGCAAAAAGGGTA
AATCGCAGACCAAATACCGTATAAGTTTACAATACCAACGGGTTGACGCT
TATAAGGTTATGGAAGAAAAAGAGCTCTACCCTTGGGACCAAATGGCATG
TGAGATTGGAGGTCTTATCGGGTTGGTTATTGGTGCATCCATAATTTCTT
TGGTAGAGATTATAGCGTACGTATTTTTGGTGATTgttaataaatttatt
tgacgGAAATGGAAGAGTAGAAACACCAGTatgatggttttggtgatttA
AGATACGGTGAGAAACGTATAAATGTGCCACGAATAGATGAAACTAAAAG
CCTTGGTTGAATGCCATGCAAACGATTTGAGTTAGTAACTTGCTCATCTA
ATGTCGTCTTTTATCAGGCATTAGTTTAGCAAGTCGAAAAATACGAAAAA
GGTAAAAGAAGcgaaaaatatgtacaaagaaaagtGGATAAAGAGATGTA
CTCTTTTGAAATGCGATGCAATCTGGTTAAATTCATTGAAAGAAGATGTA
CTACTTGATTGATGTTCTCAATTAATATAAGCAAAAAGAAACTAAGTTGG
TGGGTTGAATTGCTttaacaaaaattggaaaataatcCAAGAGACCTACC
TTGAAGTCTAGCAAAATATGATATGGTATTATCACAAAAGTAAGACTCGC
CAAAAAACAGTACAATGCTAAATtatattttgaacaaaaaatatgattGA
AAATATATGACGATATACATGGCTTTTGGAAGGGGAAACCAAAAACTCAA
TAACTTATCAAATTTAAGTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049881-exon-scaffold_167-1491911889:351909..352099 | TCONS_00049881-exon-scaffold_167-1491911889:351909..352099 | Clytia hemisphaerica | exon |
| TCONS_00049881-exon-scaffold_167-1510915933:351909..352099 | TCONS_00049881-exon-scaffold_167-1510915933:351909..352099 | Clytia hemisphaerica | exon |
| TCONS_00049881-exon-scaffold_167-1575043694:351909..352099 | TCONS_00049881-exon-scaffold_167-1575043694:351909..352099 | Clytia hemisphaerica | exon |
| TCONS_00049881-exon-scaffold_167-1491911889:352913..353022 | TCONS_00049881-exon-scaffold_167-1491911889:352913..353022 | Clytia hemisphaerica | exon |
| TCONS_00049881-exon-scaffold_167-1510915933:352913..353022 | TCONS_00049881-exon-scaffold_167-1510915933:352913..353022 | Clytia hemisphaerica | exon |
| TCONS_00049881-exon-scaffold_167-1575043694:352913..353022 | TCONS_00049881-exon-scaffold_167-1575043694:352913..353022 | Clytia hemisphaerica | exon |
| TCONS_00049881-exon-scaffold_167-1491911889:354140..356032 | TCONS_00049881-exon-scaffold_167-1491911889:354140..356032 | Clytia hemisphaerica | exon |
| TCONS_00049881-exon-scaffold_167-1510915933:354140..356032 | TCONS_00049881-exon-scaffold_167-1510915933:354140..356032 | Clytia hemisphaerica | exon |
| TCONS_00049881-exon-scaffold_167-1575043694:354140..356032 | TCONS_00049881-exon-scaffold_167-1575043694:354140..356032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:351909..356032 + |
Blast
The following BLAST results are available for this feature:
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