TCONS_00050038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050038
Unique NameTCONS_00050038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050038 ID=TCONS_00050038|Name=TCONS_00050038|organism=Clytia hemisphaerica|type=transcript|length=1483bp
TccccagaaaaaaattaaaagtacaACTTTGAAAAGTTTGCATAACATAG
CTCTGggaaatatttgtaaaaatatgGGATATTGGATGGAATTTTTGCCA
ACAGACCCTCATAAATTTCTTTATGTTATTAGCCCATTCGATGTTTTAAA
GATGGACTTTGATATTTTGCCAAATGGTTGGAATTACATGAAATCAATGT
TCAATAGATGCAAGAGAATCAAGAGGCTGAAAGtaacaaattcaaaaata
tccAAAGAGCTTATCAAAAGAATTCCAACATCATATCCCGGTATTGAAGA
ACTCAATTTGGGAGGTCCCCATCAAGACCTTAtcgataatttgaaaaatt
gttgtAAATTAAAGTCACTTCATTTTACTGCCAGTTCATTATCTGTTTTG
AAGATAACATTTCCACCAGAGATACAATCCCTCACAATGAAACATTTAGC
TGGTGATGCGAATGATTCAGACCATCTTTGGAGTATCTTAAATGAATTAA
AGTCATTATCCAGGCTATCTCTCCATGGATCTGAGTTACATTTTTCCACT
CTTCCAGATGATATCAAATTCCCAAACGTCAAAGCGTTGGATCTCTCAAA
TTGCACAGGTTTAACAAACCAAAATCTAATTTCCATATTGGAGGCTGTAA
TCAATATCGCTGACCTAAATTTGAATGGACTGTCCTGTGATGATACAAAG
ATTTTTAATTCTATTGAAAAACTACCaaatttgttgattttaaaaattgc
ttATTTGTTTGTGGTTTTTGACAATAATGtcaaattttgcttgaaaacaa
taggaAGTCAACTGGTTACTTTGGATATATCTGGGAATCTAGCTATAGAC
ATTGATTTCATTAGAATGCACTGTCCAAATTTAGAAAGCCTCTTATTGTC
ACAATGTACTTTTTTGAATCCTGATTTCTTTGAACAAAGAATTATCGAAG
ATCAATTAAGTCAATATTCTTGTACGAAACTCAAGAAGTTTGAGCTAGAT
TCTGTCTCTCTGGATATAATCACTGACAATACTAGTAATATTGAACCAAT
CATAGGAGATGGTGAATTCAATTCGAGAATATTCGATACTCTTTGTCAGA
CAGTGTATAAACATTTCATGTCAAAAAGTCTtataaaatcacttaaaatt
gGCCATGGAGCTTTTGTTGattatattttaaaacattttgaagGTACTTT
ATTAGAATATATCGATTTCTCTGGATGTCGAGGCTTAAAGAAGGAACATA
TCGTTAAGTGTTTATTGAAATTCccaaatttaaaacaaattgaTTATTTT
GGTTGCAAGATTTTACAATCAGAAAGGAGCTACTTAAATGGACTAATCTT
CAGAGCTGGTATTGATGTGAAGTGTGAAGGAGACTTTAAGTTTTCTTAAT
TAATTGTTAAAAGATtgtaaatgaaattttataaaGTTACTATATTGGCT
CTCTTTTTtgataacaataataataaattAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_167:377174..379144-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050038 ID=TCONS_00050038|Name=TCONS_00050038|organism=Clytia hemisphaerica|type=transcript|length=1971bp|location=Sequence derived from alignment at scaffold_167:377174..379144- (Clytia hemisphaerica)
TCCCCAGAAAAAAATTAAAAGTACAACTTTGAAAAGTTTGCATAACATAG
CTCTGGGAAATATTTGTAAAAATATGGGATATTGGATGGAATTTTTGCCA
ACAGACCCTCATAAATTTCTTTATGTTATTAGCCCATTCGATGTTTTAAG
TAAGTATCACTTTTCCATAATGATAAATTTAGATATCATTTTTTAAACAT
TTTATATTCAAAAACTTGAGTAAACTTCTTGCTAGACTTGATTGGAGACT
TGATTATTCATTAGATAATTTATAAATACTTCTTTTCATTAAATCTCTTT
GATAAAAGGCTCCAAAGATACCATGGCAATACTTTCAATGCTCACAGAGA
TGCACAAATTTAAGCCATGTTATTTGAACTTGATTTTCCATCAACACCTG
CTAGAGATGGACTTTGATATTTTGCCAAATGGTTGGAATTACATGAAATC
AATGTTCAATAGATGCAAGGTAAATTTATTAGAATTATTAAACCTTTTTT
GTTTATTTTCGTAAAGCTAAGACCAGTTTTGTCTATATACACACATTTTG
TTCTATTGAGCATCTGTCAAAACTTTCAAATATCAGATTTAAAGCTTTGT
ACTGTTTTTTATTGTGCCTAACATTATATTTTTTCAATTGCTATGATTTT
CATAATAAAGATAGAATCAAAAACTAAAAATCGTACCATATTTTTATTTC
AGAGAATCAAGAGGCTGAAAGTAACAAATTCAAAAATATCCAAAGAGCTT
ATCAAAAGAATTCCAACATCATATCCCGGTATTGAAGAACTCAATTTGGG
AGGTCCCCATCAAGACCTTATCGATAATTTGAAAAATTGTTGTAAATTAA
AGTCACTTCATTTTACTGCCAGTTCATTATCTGTTTTGAAGATAACATTT
CCACCAGAGATACAATCCCTCACAATGAAACATTTAGCTGGTGATGCGAA
TGATTCAGACCATCTTTGGAGTATCTTAAATGAATTAAAGTCATTATCCA
GGCTATCTCTCCATGGATCTGAGTTACATTTTTCCACTCTTCCAGATGAT
ATCAAATTCCCAAACGTCAAAGCGTTGGATCTCTCAAATTGCACAGGTTT
AACAAACCAAAATCTAATTTCCATATTGGAGGCTGTAATCAATATCGCTG
ACCTAAATTTGAATGGACTGTCCTGTGATGATACAAAGATTTTTAATTCT
ATTGAAAAACTACCAAATTTGTTGATTTTAAAAATTGCTTATTTGTTTGT
GGTTTTTGACAATAATGTCAAATTTTGCTTGAAAACAATAGGAAGTCAAC
TGGTTACTTTGGATATATCTGGGAATCTAGCTATAGACATTGATTTCATT
AGAATGCACTGTCCAAATTTAGAAAGCCTCTTATTGTCACAATGTACTTT
TTTGAATCCTGATTTCTTTGAACAAAGAATTATCGAAGATCAATTAAGTC
AATATTCTTGTACGAAACTCAAGAAGTTTGAGCTAGATTCTGTCTCTCTG
GATATAATCACTGACAATACTAGTAATATTGAACCAATCATAGGAGATGG
TGAATTCAATTCGAGAATATTCGATACTCTTTGTCAGACAGTGTATAAAC
ATTTCATGTCAAAAAGTCTTATAAAATCACTTAAAATTGGCCATGGAGCT
TTTGTTGATTATATTTTAAAACATTTTGAAGGTACTTTATTAGAATATAT
CGATTTCTCTGGATGTCGAGGCTTAAAGAAGGAACATATCGTTAAGTGTT
TATTGAAATTCCCAAATTTAAAACAAATTGATTATTTTGGTTGCAAGATT
TTACAATCAGAAAGGAGCTACTTAAATGGACTAATCTTCAGAGCTGGTAT
TGATGTGAAGTGTGAAGGAGACTTTAAGTTTTCTTAATTAATTGTTAAAA
GATTGTAAATGAAATTTTATAAAGTTACTATATTGGCTCTCTTTTTTGAT
AACAATAATAATAAATTAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031696XLOC_031696Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050038-exon-scaffold_167-1575043694:378996..379144TCONS_00050038-exon-scaffold_167-1575043694:378996..379144Clytia hemisphaericaexon
TCONS_00050038-exon-scaffold_167-1575043694:378676..378740TCONS_00050038-exon-scaffold_167-1575043694:378676..378740Clytia hemisphaericaexon
TCONS_00050038-exon-scaffold_167-1575043694:377174..378442TCONS_00050038-exon-scaffold_167-1575043694:377174..378442Clytia hemisphaericaexon
TCONS_00050038-exon-scaffold_167-1510915933:378996..379144TCONS_00050038-exon-scaffold_167-1510915933:378996..379144Clytia hemisphaericaexon
TCONS_00050038-exon-scaffold_167-1510915933:378676..378740TCONS_00050038-exon-scaffold_167-1510915933:378676..378740Clytia hemisphaericaexon
TCONS_00050038-exon-scaffold_167-1510915933:377174..378442TCONS_00050038-exon-scaffold_167-1510915933:377174..378442Clytia hemisphaericaexon
TCONS_00050038-exon-scaffold_167-1491911889:378996..379144TCONS_00050038-exon-scaffold_167-1491911889:378996..379144Clytia hemisphaericaexon
TCONS_00050038-exon-scaffold_167-1491911889:378676..378740TCONS_00050038-exon-scaffold_167-1491911889:378676..378740Clytia hemisphaericaexon
TCONS_00050038-exon-scaffold_167-1491911889:377174..378442TCONS_00050038-exon-scaffold_167-1491911889:377174..378442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:377174..379144 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.25103	0.630268	0	0.0679315	0.00048097	0.979724	1.33257	2.40045	0	1.11662	0.525154	0.185731	0.0708689	0.831147	0.177479	0.0449546	0.539757	0.103356	0.0112491	1.34453	0	0	0.550408	0	0.359108	0	0.260261	0.236712	0.433501	1.2352
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top