TCONS_00050045 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050045
Unique NameTCONS_00050045
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2087

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050045 ID=TCONS_00050045|Name=TCONS_00050045|organism=Clytia hemisphaerica|type=transcript|length=2087bp
CTAAAAATGCAGTTGCTAACATTAGTTAGCTTATTATTGGCACTTAATGT
CGCCATGGCTAAAGGACCAAACATCGTATATATTTTACTTGATGATGTTG
GTTGGGCAGATTTTGGATACAATGTCAACGGAAACACGTCAATCCCTACT
CCATATATCGATCGAATTGCTGGTGAAGGAATCAAACTGAAAAGTCATTA
TGTTCAGCCTACCTGCACACCATCAAGAGCTAGTCTACTGACTGGTCGCT
ATGCTAGAAATACTGGCCTGACATTCGCAATGTTTCCGGATTCCATCTCA
GGACTTCCTGATGAAATGCCAACAATGCCTCAACTATTACGTAAAGTTGG
TTATTCAGCGCATATGGTCGGTAAATGGCATCTCGGGCATGCGCAGTGGA
AGCAACTTCCTGTTAGGAAAGGATTTGAGTCATTCACTGGTTCTTTTATG
GGAGATTTAGACAGCTATGACAAATCTGTGTGGCTTGGATATAGAAAATT
CCAAAGCCTGGATTGGATAGAAGCTCATGAGAATGGGACATATAAACATC
AATTGAATATGACACATGCAACGAAAATGATCACAGATACTGCAATCGAA
AGGATGCATCAACACAAGCAAGAAAAGgAGAATCCGTTATTCTTGTACGT
CAGTTTCACTGCTGCTCATTCACCACTACAAGCAGAACCCGAAGATGCCA
TCAAATGCACACATATCCCTCATCTCTGGCGAAGACAATTCTGTGGTATG
ATGGTTGGTCTTGATAAGGCTATTGCCAGGTTGACCGAAGCTGCTCAAGA
AAAGTTAGGTGATGATACTGTCATTGTGGTCAGCTCTGATAATGGTGGAT
CTGTCTGGTTTGGTGCTCTTAATCAACCTTTAAGATCTGGCAAGATTACG
GTCTTTGAAGGTGGGATAAGAGCTTCAGCATTTGTTCGTGATTTGAGTAA
TGGAAAATATATTGGAAAAGGCGGTCGAGAATTTCATCATAAAATGCATA
TCAGTGATTGGCTTCCAACATTTCTCTCGTGGGCTGATTCGAAACACTTG
GTTGAGGATTTGAATCTGGATGGTATTGACCAATCAGAGGCTTTGAAGGC
TGGTGAAAGCGTCAGAGATGAAGTGCTTGTTGAGTTGTACTCGCCAGATG
AAACACATGACAAGGCACGTATGAGCGCTTACATTAAGGGGAAATACAAG
CTGATCCAGGGAGATGTTAGAGATCCTTACCATTACACTGAGCCGACGGA
AGACCATGTCAAAACCAGCGATGACCAAATTTTTCCAAGAGTCATTTATG
AGCAGTTAAGTAGGCTTTTTGATGCTGTTTGGGGTGAGAGAAAAGCTGAG
GTATATCGAATGGCTTTAACCAATTTCCTGCTATTTCTATCTTATTCGAA
ACGTATTGGTCCGCAACTCATGTTATTCGACTTGGAAAAAGATGTCGAGG
AAAGATACAATATTGCTGGTGGCCATCCAGAGATTGTGGCTGATATTCTG
AAAACCTTGGATGAGATCAAACGAAAGAGTCCACCGATGTCGGAATATTA
TAAAATGGCAATCGGGAACCTCACTAAGACGGTAGTTGGCGATTGCTCGG
GAACACCGATCCCTGAAGAATATTGCCGATTTGCACACCCATGGCTTGCC
GATGATGCCGATCTAAACGAAGTACCGACTGAAAGTTTTGCCAAAATGAT
GAGGGTCAGATTGTTGATCGATATTGGTTCAATTTTACTCGGATTTTTGG
taattattttgtttcttttctatTGTTTGTGTTGTCGTGGAAAAAGCAAA
GAGATGAACTTAAAAcagaaaaagaattaaaaatgtcGGAACTTTAATAT
TttgtggaaaatatttttcaaagttgtaAGGATTTCTGAATATAATTTTT
AAGTCTAGAAAAACTTGAGACCTTCCTTCATTTTTCACAAATCATAAGAA
GTCATAATgatggaaaaaatggaaaaaatgaccaaaatatcgttcccagt
ggaaaattgtCCTCGAAGCTTTGTCTCCCCCAATGAAAATATGCAAATGA
AACCAATGCTCACAGCAAAATatcatgctatttttcc
Run BLAST on NCBI

protein sequence of TCONS_00050045-protein

>TCONS_00050045-protein ID=TCONS_00050045-protein|Name=TCONS_00050045-protein|organism=Clytia hemisphaerica|type=polypeptide|length=609bp
LKMQLLTLVSLLLALNVAMAKGPNIVYILLDDVGWADFGYNVNGNTSIPT
PYIDRIAGEGIKLKSHYVQPTCTPSRASLLTGRYARNTGLTFAMFPDSIS
GLPDEMPTMPQLLRKVGYSAHMVGKWHLGHAQWKQLPVRKGFESFTGSFM
GDLDSYDKSVWLGYRKFQSLDWIEAHENGTYKHQLNMTHATKMITDTAIE
RMHQHKQEKENPLFLYVSFTAAHSPLQAEPEDAIKCTHIPHLWRRQFCGM
MVGLDKAIARLTEAAQEKLGDDTVIVVSSDNGGSVWFGALNQPLRSGKIT
VFEGGIRASAFVRDLSNGKYIGKGGREFHHKMHISDWLPTFLSWADSKHL
VEDLNLDGIDQSEALKAGESVRDEVLVELYSPDETHDKARMSAYIKGKYK
LIQGDVRDPYHYTEPTEDHVKTSDDQIFPRVIYEQLSRLFDAVWGERKAE
VYRMALTNFLLFLSYSKRIGPQLMLFDLEKDVEERYNIAGGHPEIVADIL
KTLDEIKRKSPPMSEYYKMAIGNLTKTVVGDCSGTPIPEEYCRFAHPWLA
DDADLNEVPTESFAKMMRVRLLIDIGSILLGFLVIILFLFYCLCCRGKSK
EMNLKQKKN
Run BLAST on NCBI

transcript from alignment at scaffold_167:450116..456493-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050045 ID=TCONS_00050045|Name=TCONS_00050045|organism=Clytia hemisphaerica|type=transcript|length=6378bp|location=Sequence derived from alignment at scaffold_167:450116..456493- (Clytia hemisphaerica)
CTAAAAATGCAGTTGCTAACATTAGTTAGCTTATTATTGGCACTTAATGT
CGCCATGGCTAAAGGACCAAACATCGTATATATTTTACTTGATGATGTTG
GTTGGGCAGATTTTGGATACAATGTCAACGGAAACACGTCAATCCCTACT
CCATATATCGATCGAATTGCTGGTGAAGGAATCAAACTGAAAAGTCATTA
TGTTCAGCCTACCTGCACACCATCAAGAGCTAGTCTACTGACTGGTCGCT
ATGCTAGAAATACTGGCCTGACATTCGCAATGTTTCCGGATTCCATCTCA
GGACTTCCTGATGAAATGCCAACAATGCCTCAACTATTACGTAAAGTTGG
TTATTCAGCGCATATGGTCGGTAAATGGCATCTCGGGCATGCGCAGTGGA
AGCAACTTCCTGTTAGGAAAGGATTTGAGTCATTCACTGGTTCTTTTATG
GGAGATTTAGACAGCTATGACAAATCTGTGTGGCTTGGATATAGAAAATT
CCAAAGCCTGGATTGGATAGAAGCTCATGAGAATGGGACATATAAACATC
AATTGAATATGACACATGCAACGAAAATGATCACAGATACTGCAATCGAA
AGGATGCATCAACACAAGCAAGAAAAGGTTTGTGAATTTCAATTAAAAAG
GTTTCATTCTATTGAAAAACGAAGCCTAATTACCCCCCTCTGGTAAAAAT
TCTTGATAAGATCTGAAAAGAACGTTGAAGATCTTTCAAGATCTTTAACA
AGTAAGAAACTTAAAAAATCTTTGTAAGATCTTACAACGATTCTTAGGCA
ATCTTGAAAATGTCTTCCAACAAAAAGATCTTTAAAGATTTTTTAAAGAA
ATTGTTAAGAATTGTCAAGATTCTTCCCGCATATTTATAGTAAGAAAATT
TATTATTCTATATACTAGTCATAGCTCTCACTAAATGCCCCCACAGAAAG
GTCATATCATGCACTTATAAAGCTTTTAATGCTTTAAAAATTAAAGCATA
AAAAATAATCAGGAATAATTGATTGATTTAATTATTTATTGATTGGTCGA
AAAAAAAATCATATCCCATTAACAAAATACTTGAAGAATTCATGCAGCTT
GACAATTTAATAAAATTCAAGGAAAAGCTGGAAAAGCTTCTCAAAAACAT
AATACGAAAATCATGGTGTCATTGACCTTCACATCTCCTTGTTTGTTTGT
TTTTCCTTACAACAATATATGTCATGATCATTCACTAAATAGACCTTTTC
GGATAATGCTGCAGACATCTTAGATTGTAGGCAAAATATATAGCGGTGAA
TAAATCAACAAGGTAACCAGTCAGAAATAGCTTGTTTATTTTTCATTGGC
TGCTATATATTTCAACAATTCTCTTTGTTACTTTTCCTAATAAACAATAG
TAAGATGATAAGATGATGAAATTTATCAAAAAGTTCTGCGCCATCTGAAA
TAGACCAATCCTAGTTAAAGCCTGGGCTCCACTTGCATACACTGTGATTG
CAGTCAAAAGAAAAATAAAGGAATGTCATTGTGGTCCATTCAGACGTACA
GTCGAAAAGTTGAAATGTGCCTAATTTTTTTTAAAGTGCATAGTACTTTT
TTATGATGCAATCTTTTCTCCAAGCTGAAATGATTGAAGCCATTAAGATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAAAACAAAAACAATTCGCAAAAAATCGAGATTCCAGTCCAATATCTA
TGCGTGAAGCTATGAGTGCCTCCTCGTCGCTGCGCTCCTGCGGGGGCAAT
TAATACACTAAGACGTATGTGTGTTTACAACGTTTTGTAAAAAGTTTTCG
AAAATCTAACAAAGCCTCCTCTTCGTGGCGTTGAACCATCATCTTTTCGC
ACCTTATGCAGATTTCCTACCACTAGACTAACTTTGAGACCCCAAGATAC
TATTTTCTATACAGGAACTTTGGAGCTGGATGGGTTAAAATCAACCTTCT
TCCCAAATTTTATTTTTCATTTTGAAGAATTCTTATTTAGATGCTCTTTA
AAACTTTCTGTTTACAATAGCGGCTCCCTGCATTTCACTTTCAAAACTTT
AAGTCACCCACGAATGTCCAGCCACGATGGCTAGCCACGATGGCTAAAAA
GATCTAAAATATAATTCTTCTAAGCCATTTACTTAATTGTGGTTAAAAAT
TGCAATGCAATGTTACTTTTTTCTCATTTCTTTTATAAAATCAAAGTCTT
ATCATCAATCGGCGGCTATCTTTCTTCCGTTAGAGTTTTATAGATGTATA
GTGATTTGCTTGATTGGGACACGCAACGCATACGGCTAGTTCTTATTAAG
TTCTTAAGCAGAATCTTACGAAATCTTGAGCTATAAAATGCTTTCAGATT
CTTTGCGTAACTTATAAAGTTTTTATAAAGAGACTTTCCAAATCGTAACT
AACTATTATGTGCAAAGAAGCTTTAAGATTCTTAGAGGCTCTTATCAAGT
TTGTTTTAAGAATTTTAAAAACACGTAAATTTCTGGTTATGATTGTTTTT
CATAAGAAGCAGTCTTTAGACTCAAGGAGAGCAATCTCTTAGGATAGTAT
TTACGAATCAGTTTTTGGTCAGCTTAGAAATACGGTAAGTGGCTTTTCTT
TTGTGTGTTTGTTATCATTGACTGTATTAATGAAATAGTTGATCAATGGG
GAGTATTCACGAGGTCATCAGTTGAATGCTGTTACTCGAGCGAAGCTTTC
AGCCCTTATTCAATAACTCAACGGGGATAGTAGTAAGATTCCGTTAGCGA
CCGTAGTGCAGTGGTAGAGCATCCGCCTACGGTGCGCAAGGTTGTGGGTT
AAACCCCCAGCCGGGTTATATCAAAGATTCTCAAAATGGTACTTGATGCC
ACTCTGCTTGATGCTCAGCAAATATGAGAAGGATAAAAGGTAAGCGGAGC
AATCCAGGGAGAAAGAGTGGCGCAAACCCCTTCGGGTAGACAGCTATCGA
AAGAGGAGCCTTCGGGTCGCCTCCGACTGCAGTCGTAGACTTAGTTTTAT
TTAAGATTCCGTCAAGATCTTGAATCACTGTAGTGGACAAGAATCTTATT
CAAAACTTATAAAAAAGTCTTATCAGATCGTTAAAGATCTTGAAAGATCT
TGGCACGTTCGTAGTAAGAAACTGAAAAAGGATAAGCATAGTTTCTTGAT
AAGATCTTTTCAAGAGCTTTTTCAAGAATTTTTACCAGGGCCCTAATCCT
GGTTGAAAATTATCACTATGTCATTGAGACAACAACATCTTAACCCTTAA
AGTGCCAATGTCGAGTATTAGACATGGTCTATATATCTTACTCGTAGGAA
TTGGATCGTGCTTCTTGGTCAAGCAAAATAAAATAAAAAAGTGAGTCTTT
CCAGCGAGATTTCAAATCAAAAAGTCAAAAAAATGCAAACATTTGACAAA
AATCCACTTTTGTATGTAAGATTTTGACTATTTTTTGACCATTTCTGTTC
AACGAGTGATCCAAGAACCTCCAGGTTTGGCCCTGTTTTAATTTATTCTG
TCTTCTAGCAAATTAATTTGAAGTTTTACCACTGGGCACCTTTCCGTCAT
GTTTTAATTCCCCTAACCTCCCCCACCCTTAGTCACTGCCCACCGTGTCG
ACCCCGCCCATCCTAAATCGGGCAGCGCCGAAGGCGCTCAAAAGAAAGAG
GAGAATCTAAGCTATCCAATGAGCTATGAACGAGCTTCTAACTCCGAAGA
TCTTTAAAGTTTAAACTAGCGATTTTCTTAAAAAACTTGGAGAAAAGGAC
CGTGGCACTTAAAGGGCTAAAAATTGTGTAAATTAGTAAAACCACGTCGT
TGTATTTTGCTGCAGCTTACGCTTGAAAACGCTTACTACGTTCGCTATGA
ATACAATTTATGGCTTTCCGAACTACTCTACCTTTATGAGAATCTTTACT
AATCTGTGTGAATCTCACGAAATTGTGTCTCAAGACAGACAGAGACGAAA
GCTTTTACAAACATATTCTTAACGAAACTAAAACTCTTGATAACAAAAAA
TGTTTTTCATTGTTTCAGGAGAATCCGTTATTCTTGTACGTCAGTTTCAC
TGCTGCTCATTCACCACTACAAGCAGAACCCGAAGATGCCATCAAATGCA
CACATATCCCTCATCTCTGGCGAAGACAATTCTGTGGTATGATGGTTGGT
CTTGATAAGGCTATTGCCAGGTTGACCGAAGCTGCTCAAGAAAAGTTAGG
TGATGATACTGTCATTGTGGTCAGCTCTGATAATGGTGGATCTGTCTGGT
TTGGTGCTCTTAATCAACCTTTAAGATCTGGCAAGATTACGGTCTTTGAA
GGTGGGATAAGAGCTTCAGCATTTGTTCGTGATTTGAGTAATGGAAAATA
TATTGGAAAAGGCGGTCGAGAATTTCATCATAAAATGCATATCAGTGATT
GGCTTCCAACATTTCTCTCGTGGGCTGATTCGAAACACTTGGTTGAGGAT
TTGAATCTGGATGGTATTGACCAATCAGAGGCTTTGAAGGCTGGTGAAAG
CGTCAGAGATGAAGTGCTTGTTGAGTTGTACTCGCCAGATGAAACACATG
ACAAGGCACGTATGAGCGCTTACATTAAGGGGAAATACAAGCTGATCCAG
GGAGATGTTAGAGATCCTTACCATTACACTGAGCCGACGGAAGACCATGT
CAAAACCAGCGATGACCAAATTTTTCCAAGAGTCATTTATGAGCAGTTAA
GTAGGCTTTTTGATGCTGTTTGGGGTGAGAGAAAAGCTGAGGTATATCGA
ATGGCTTTAACCAATTTCCTGCTATTTCTATCTTATTCGAAACGTATTGG
TCCGCAACTCATGTTATTCGACTTGGAAAAAGATGTCGAGGAAAGATACA
ATATTGCTGGTGGCCATCCAGAGATTGTGGCTGATATTCTGAAAACCTTG
GATGAGATCAAACGAAAGAGTCCACCGATGTCGGAATATTATAAAATGGC
AATCGGGAACCTCACTAAGACGGTAGTTGGCGATTGCTCGGGAACACCGA
TCCCTGAAGAATATTGCCGATTTGCACACCCATGGCTTGCCGATGATGCC
GATCTAAACGAAGTACCGACTGAAAGTTTTGCCAAAATGATGAGGGTCAG
ATTGTTGATCGATATTGGTTCAATTTTACTCGGATTTTTGGTAATTATTT
TGTTTCTTTTCTATTGTTTGTGTTGTCGTGGAAAAAGCAAAGAGATGAAC
TTAAAACAGAAAAAGAATTAAAAATGTCGGAACTTTAATATTTTGTGGAA
AATATTTTTCAAAGTTGTAAGGATTTCTGAATATAATTTTTAAGTCTAGA
AAAACTTGAGACCTTCCTTCATTTTTCACAAATCATAAGAAGTCATAATG
ATGGAAAAAATGGAAAAAATGACCAAAATATCGTTCCCAGTGGAAAATTG
TCCTCGAAGCTTTGTCTCCCCCAATGAAAATATGCAAATGAAACCAATGC
TCACAGCAAAATATCATGCTATTTTTCC

Coding sequence (CDS) from alignment at scaffold_167:450116..456493-

>TCONS_00050045 ID=TCONS_00050045|Name=TCONS_00050045|organism=Clytia hemisphaerica|type=CDS|length=3660bp|location=Sequence derived from alignment at scaffold_167:450116..456493- (Clytia hemisphaerica)
GAGAATCCGTTATTCTTGTACGTCAGTTTCACTGCTGCTCATTCACCACT
ACAAGCAGAACCCGAAGATGCCATCAAATGCACACATATCCCTCATCTCT
GGCGAAGACAATTCTGTGGTATGATGGTTGGTCTTGATAAGGCTATTGCC
AGGTTGACCGAAGCTGCTCAAGAAAAGTTAGGTGATGATACTGTCATTGT
GGTCAGCTCTGATAATGGTGGATCTGTCTGGTTTGGTGCTCTTAATCAAC
CTTTAAGATCTGGCAAGATTACGGTCTTTGAAGGTGGGATAAGAGCTTCA
GCATTTGTTCGTGATTTGAGTAATGGAAAATATATTGGAAAAGGCGGTCG
AGAATTTCATCATAAAATGCATATCAGTGATTGGCTTCCAACATTTCTCT
CGTGGGCTGATTCGAAACACTTGGTTGAGGATTTGAATCTGGATGGTATT
GACCAATCAGAGGCTTTGAAGGCTGGTGAAAGCGTCAGAGATGAAGTGCT
TGTTGAGTTGTACTCGCCAGATGAAACACATGACAAGGCACGTATGAGCG
CTTACATTAAGGGGAAATACAAGCTGATCCAGGGAGATGTTAGAGATCCT
TACCATTACACTGAGCCGACGGAAGACCATGTCAAAACCAGCGATGACCA
AATTTTTCCAAGAGTCATTTATGAGCAGTTAAGTAGGCTTTTTGATGCTG
TTTGGGGTGAGAGAAAAGCTGAGGTATATCGAATGGCTTTAACCAATTTC
CTGCTATTTCTATCTTATTCGAAACGTATTGGTCCGCAACTCATGTTATT
CGACTTGGAAAAAGATGTCGAGGAAAGATACAATATTGCTGGTGGCCATC
CAGAGATTGTGGCTGATATTCTGAAAACCTTGGATGAGATCAAACGAAAG
AGTCCACCGATGTCGGAATATTATAAAATGGCAATCGGGAACCTCACTAA
GACGGTAGTTGGCGATTGCTCGGGAACACCGATCCCTGAAGAATATTGCC
GATTTGCACACCCATGGCTTGCCGATGATGCCGATCTAAACGAAGTACCG
ACTGAAAGTTTTGCCAAAATGATGAGGGTCAGATTGTTGATCGATATTGG
TTCAATTTTACTCGGATTTTTGGTAATTATTTTGTTTCTTTTCTATTGTT
TGTGTTGTCGTGGAAAAAGCAAAGAGATGAACTTAAAACAGAAAAAGAAT
TAACTAAAAATGCAGTTGCTAACATTAGTTAGCTTATTATTGGCACTTAA
TGTCGCCATGGCTAAAGGACCAAACATCGTATATATTTTACTTGATGATG
TTGGTTGGGCAGATTTTGGATACAATGTCAACGGAAACACGTCAATCCCT
ACTCCATATATCGATCGAATTGCTGGTGAAGGAATCAAACTGAAAAGTCA
TTATGTTCAGCCTACCTGCACACCATCAAGAGCTAGTCTACTGACTGGTC
GCTATGCTAGAAATACTGGCCTGACATTCGCAATGTTTCCGGATTCCATC
TCAGGACTTCCTGATGAAATGCCAACAATGCCTCAACTATTACGTAAAGT
TGGTTATTCAGCGCATATGGTCGGTAAATGGCATCTCGGGCATGCGCAGT
GGAAGCAACTTCCTGTTAGGAAAGGATTTGAGTCATTCACTGGTTCTTTT
ATGGGAGATTTAGACAGCTATGACAAATCTGTGTGGCTTGGATATAGAAA
ATTCCAAAGCCTGGATTGGATAGAAGCTCATGAGAATGGGACATATAAAC
ATCAATTGAATATGACACATGCAACGAAAATGATCACAGATACTGCAATC
GAAAGGATGCATCAACACAAGCAAGAAAAGGAGAATCCGTTATTCTTGTA
CGTCAGTTTCACTGCTGCTCATTCACCACTACAAGCAGAACCCGAAGATG
CCATCAAATGCACACATATCCCTCATCTCTGGCGAAGACAATTCTGTGGT
ATGATGGTTGGTCTTGATAAGGCTATTGCCAGGTTGACCGAAGCTGCTCA
AGAAAAGTTAGGTGATGATACTGTCATTGTGGTCAGCTCTGATAATGGTG
GATCTGTCTGGTTTGGTGCTCTTAATCAACCTTTAAGATCTGGCAAGATT
ACGGTCTTTGAAGGTGGGATAAGAGCTTCAGCATTTGTTCGTGATTTGAG
TAATGGAAAATATATTGGAAAAGGCGGTCGAGAATTTCATCATAAAATGC
ATATCAGTGATTGGCTTCCAACATTTCTCTCGTGGGCTGATTCGAAACAC
TTGGTTGAGGATTTGAATCTGGATGGTATTGACCAATCAGAGGCTTTGAA
GGCTGGTGAAAGCGTCAGAGATGAAGTGCTTGTTGAGTTGTACTCGCCAG
ATGAAACACATGACAAGGCACGTATGAGCGCTTACATTAAGGGGAAATAC
AAGCTGATCCAGGGAGATGTTAGAGATCCTTACCATTACACTGAGCCGAC
GGAAGACCATGTCAAAACCAGCGATGACCAAATTTTTCCAAGAGTCATTT
ATGAGCAGTTAAGTAGGCTTTTTGATGCTGTTTGGGGTGAGAGAAAAGCT
GAGGTATATCGAATGGCTTTAACCAATTTCCTGCTATTTCTATCTTATTC
GAAACGTATTGGTCCGCAACTCATGTTATTCGACTTGGAAAAAGATGTCG
AGGAAAGATACAATATTGCTGGTGGCCATCCAGAGATTGTGGCTGATATT
CTGAAAACCTTGGATGAGATCAAACGAAAGAGTCCACCGATGTCGGAATA
TTATAAAATGGCAATCGGGAACCTCACTAAGACGGTAGTTGGCGATTGCT
CGGGAACACCGATCCCTGAAGAATATTGCCGATTTGCACACCCATGGCTT
GCCGATGATGCCGATCTAAACGAAGTACCGACTGAAAGTTTTGCCAAAAT
GATGAGGGTCAGATTGTTGATCGATATTGGTTCAATTTTACTCGGATTTT
TGGTAATTATTTTGTTTCTTTTCTATTGTTTGTGTTGTCGTGGAAAAAGC
AAAGAGATGAACTTAAAACAGAAAAAGAATTAACTAAAAATGCAGTTGCT
AACATTAGTTAGCTTATTATTGGCACTTAATGTCGCCATGGCTAAAGGAC
CAAACATCGTATATATTTTACTTGATGATGTTGGTTGGGCAGATTTTGGA
TACAATGTCAACGGAAACACGTCAATCCCTACTCCATATATCGATCGAAT
TGCTGGTGAAGGAATCAAACTGAAAAGTCATTATGTTCAGCCTACCTGCA
CACCATCAAGAGCTAGTCTACTGACTGGTCGCTATGCTAGAAATACTGGC
CTGACATTCGCAATGTTTCCGGATTCCATCTCAGGACTTCCTGATGAAAT
GCCAACAATGCCTCAACTATTACGTAAAGTTGGTTATTCAGCGCATATGG
TCGGTAAATGGCATCTCGGGCATGCGCAGTGGAAGCAACTTCCTGTTAGG
AAAGGATTTGAGTCATTCACTGGTTCTTTTATGGGAGATTTAGACAGCTA
TGACAAATCTGTGTGGCTTGGATATAGAAAATTCCAAAGCCTGGATTGGA
TAGAAGCTCATGAGAATGGGACATATAAACATCAATTGAATATGACACAT
GCAACGAAAATGATCACAGATACTGCAATCGAAAGGATGCATCAACACAA
GCAAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031698XLOC_031698Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050045-proteinTCONS_00050045-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050045-exon-scaffold_167-1575043694:455867..456493TCONS_00050045-exon-scaffold_167-1575043694:455867..456493Clytia hemisphaericaexon
TCONS_00050045-exon-scaffold_167-1575043694:450116..451575TCONS_00050045-exon-scaffold_167-1575043694:450116..451575Clytia hemisphaericaexon
TCONS_00050045-exon-scaffold_167-1510915933:455867..456493TCONS_00050045-exon-scaffold_167-1510915933:455867..456493Clytia hemisphaericaexon
TCONS_00050045-exon-scaffold_167-1510915933:450116..451575TCONS_00050045-exon-scaffold_167-1510915933:450116..451575Clytia hemisphaericaexon
TCONS_00050045-exon-scaffold_167-1491911889:455867..456493TCONS_00050045-exon-scaffold_167-1491911889:455867..456493Clytia hemisphaericaexon
TCONS_00050045-exon-scaffold_167-1491911889:450116..451575TCONS_00050045-exon-scaffold_167-1491911889:450116..451575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:450116..456493 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.21471	5.43456	2.08511	1.75489	0	0.0201314	0.0242877	0.0227378	0.159503	0.245361	0.53728	0.476479	9.49233	9.11945	12.2385	13.0337	5.37693	5.1131	2.34038	1.22459	2.69661	2.76697	2.43652	2.44873	2.13906	1.08863	0.143761	0.206927	3.06816	2.06158
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017849Alkaline_Pase-like_a/b/a
IPR000917Sulfatase_N
IPR024607Sulfatase_CS
IPR017850Alkaline_phosphatase_core
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0008484sulfuric ester hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008484 sulfuric ester hydrolase activity
Blast
[Close]
BLAST of TCONS_00050045 vs. Swiss-Prot (Human)
Match: ARSJ (Arylsulfatase J OS=Homo sapiens GN=ARSJ PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.740e-68
Identity = 164/501 (32.73%), Postives = 261/501 (52.10%), Query Frame = 1 
Query:   67 PNIVYILLDDVGWADFGYNVNGNTSIPTPYIDRIAGEGIKLKSHYVQPTCTPSRASLLTGRYARNTGLTFAMF-PDSISGLPDEMPTMPQLLRKVGYSAHMVGKWHLGHAQWKQLPVRKGFESFTGSFMGDLDSY-----DKSVWLGYRKFQSLDWIEAHENGTYKHQLNMTHATKMITDTAIERMHQHKQEKENPLFLYVSFTAAHSPLQAEPEDAIKCTHIPHLWRRQFCGMMVGLDKAIARLTEAAQE-KLGDDTVIVVSSDNGGSVWFGALNQPLRSGKITVFEGGIRASAFVRDLSNGKYIGKGGREFHHKMHISDWLPTFLSWADSKHLVEDLNLDGIDQSEALKAGESVRDEVLVELYSPDETHDKARMSAYIKGK---YKLIQGDVRDPYHYTEPTEDHVKTSDDQIFPRVIYEQLSRLFDAVWGERKAEVYRMALTNFLLFLSYSKRIGPQLMLFDLEKDVEERYNIAGGHPEIVADILKTLDEIKRKSPPM 1539
            P++++IL DD G+ D GY+    + I TP +D++A EG+KL+++YVQP CTPSR+  +TG+Y  +TGL  ++  P   + LP +  T+PQ L++VGYS HMVGKWHLG  + + +P R+GF++F GS +G  D Y     D     GY  +++ +    ++NG Y        +T+M T    + +  H   K  P+FLY+++ A HSPLQA          I ++ RR++  M+  LD+AI  +T A +     ++++I+ SSDNGG    G  N PLR  K T +EGGIRA  FV        +   G      +HI+DW PT +S A+ + + ED+ LDG D  E +   E +R   +  L++ D  + KA+  ++  G       IQ  +R   H+   T +      D + P    +  S L    W        R+ L+            G  + LF++  D  ER +++  +P IV  +L+ L +  + + P+
Sbjct:   76 PHLIFILADDQGFRDVGYH---GSEIKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTRRGFDTFFGSLLGSGDYYTHYKCDSPGMCGYDLYENDNAAWDYDNGIY--------STQMYTQRVQQILASHNPTK--PIFLYIAYQAVHSPLQAPGRYFEHYRSIININRRRYAAMLSCLDEAINNVTLALKTYGFYNNSIIIYSSDNGGQPTAGGSNWPLRGSKGTYWEGGIRAVGFVHS----PLLKNKGTVCKELVHITDWYPTLISLAEGQ-IDEDIQLDGYDIWETIS--EGLRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRV-QHWKLLTGN--PGYSDWVPP----QSFSNLGPNRWHNE-----RITLST-----------GKSVWLFNITADPYERVDLSNRYPGIVKKLLRRLSQFNKTAVPV 533
The following BLAST results are available for this feature:
BLAST of TCONS_00050045 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARSJ1.740e-6832.73Arylsulfatase J OS=Homo sapiens GN=ARSJ PE=2 SV=1[more]
back to top