TCONS_00050160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050160
Unique NameTCONS_00050160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050160 ID=TCONS_00050160|Name=TCONS_00050160|organism=Clytia hemisphaerica|type=transcript|length=587bp
GTGAGattgaattttaaaataacACTAAAGCGATAAAAGTTAGCATTTCA
GTCGGGATTTCAGTTGCAAATCAAACTATTAGCCTCGCTCCCGGGCCACT
TAAGCcacaaaaatttctaattttgggAGTAGGCGACACATATTTTTTGG
TATTTACGGAACGACCTAGAACTGACACTGGTAAATAGAACCCCTGTCAG
CAGCACATCCTtcgtatttttaatttttgctttttacCAAAACAGGGGTA
AAAGgttaaaagtaaaaatacaaagaattcaATCCTGCAAAGGTTTTACA
AAGAGACAAACAAGCAACAACAAGAGTTGCAAACACAAAGATAACCATTT
TCTCTGTAACAAAAATAATGCCACATCTCAACTTGAAATTTTATAAAGAT
CGTAATTATAAATCTATTTATCCTCACATAGTAGGTATTTAAGATCCATC
AGGATGAGTTTACTGCAAAGCGTCCGCACCACGTGTGTTAGAGAAGCTCA
AATAACTGAAGGTATGAACGGCATATCCAAAGCATTGAAAACGTCAAGGA
CCTTCAAGATTCTAGCTCAAGAAGTCGAATTTCTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_167:474743..475329

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050160 ID=TCONS_00050160|Name=TCONS_00050160|organism=Clytia hemisphaerica|type=transcript|length=587bp|location=Sequence derived from alignment at scaffold_167:474743..475329 (Clytia hemisphaerica)
GTTAGAAATTCGACTTCTTGAGCTAGAATCTTGAAGGTCCTTGACGTTTT
CAATGCTTTGGATATGCCGTTCATACCTTCAGTTATTTGAGCTTCTCTAA
CACACGTGGTGCGGACGCTTTGCAGTAAACTCATCCTGATGGATCTTAAA
TACCTACTATGTGAGGATAAATAGATTTATAATTACGATCTTTATAAAAT
TTCAAGTTGAGATGTGGCATTATTTTTGTTACAGAGAAAATGGTTATCTT
TGTGTTTGCAACTCTTGTTGTTGCTTGTTTGTCTCTTTGTAAAACCTTTG
CAGGATtgaattctttgtatttttacttttaacCTTTTACCCCTGTTTTG
gtaaaaagcaaaaattaaaaatacgaAGGATGTGCTGCTGACAGGGGTTC
TATTTACCAGTGTCAGTTCTAGGTCGTTCCGTAAATACCAAAAAATATGT
GTCGCCTACTcccaaaattagaaatttttgtgGCTTAAGTGGCCCGGGAG
CGAGGCTAATAGTTTGATTTGCAACTGAAATCCCGACTGAAATGCTAACT
TTTATCGCTTTAGTgttattttaaaattcaatCTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031765XLOC_031765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050160-exon-scaffold_167-1491911889:474743..475329TCONS_00050160-exon-scaffold_167-1491911889:474743..475329Clytia hemisphaericaexon
TCONS_00050160-exon-scaffold_167-1510915933:474743..475329TCONS_00050160-exon-scaffold_167-1510915933:474743..475329Clytia hemisphaericaexon
TCONS_00050160-exon-scaffold_167-1575043694:474743..475329TCONS_00050160-exon-scaffold_167-1575043694:474743..475329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:474743..475329 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0938565	0	0	0	0.506283	0.200036	0.120667	0.338902	0.395455	0.293901	0	0.687587	0.062421	0	0.213179	0.114387	0	0	0	0.104404	0.181492	0.265576	0	0	0	0	0	0.137348	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top