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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049905 ID=TCONS_00049905|Name=TCONS_00049905|organism=Clytia hemisphaerica|type=transcript|length=1803bp
atggccaaaaaataagaatatcctaagaatatcaccatcatggaattttg
ctattcaagcaaagaatgtcatttttagagcattctaaattataaattgc
caattacccccaaagTAataagaatgctgtaagaatattttaggatgatt
ttcccaaaaaagttaagaatatccatgatgaaatggatttacaccattct
tataaaaaaaaaagcgtgtaataggCTTTCAGAAAATAGGAAGTTTAAAA
GAGAGGGGATAGATCAAAACATCTTTGAGACGAAATACTAGCAGTTAATA
ATTTAGAGCATATTTTGATAGTTTCTTGCTCACCGCGCCGAAGGAAAGGT
AAAAAAATAGATATAAAGAAAATATGGGTTGCAATTTGAAGGTTGCTGCA
ATTGTGGTTGCAACATTGACCATTACATTCTCCAGTTTGACTCTGGTCAA
ATTGTCTTGTTCAGCTTTTAACCAATACAAGGAAAAGCAACAGATTGATA
ATGGTGGTGTGCCGGCACCACGTCATGAACCTTTGGCACTCGAGACAACA
ACTGCTGTACCGCCTAAGACACCGGAAAAGGCTTCTGCCTCCAGACGGTA
TAAGGAAGTTGTTGAGAAATGGAGCAACAGATCAACAACGTATGTTGAAC
GTGTAGTCGGGATCCTTGTCACCATCATGTCAATTGTGACGTCATTCATG
GTCTTCAATGCTGTCTCCGATGACTATGATTACAATGCTCGTAAACGTCA
TATGATCCTTCCTTTCGTTGTCTTCCACTCGCTCATCAATTTCTTCCACG
CCGTTGCAATCCTCTATATCGCAATCACATACCGCGAGTACATGGACGTC
CTCCTAGTCCCAGTCCTCATTTACATTGCAATGGTCTTTGTGACCGTTAT
TGGGATCTCCTTTGTAGGTGCATACCATAAAGCACTTGCGAGAATGGCAA
AATCTGCTGGATTTGGATATGCTCAGATGGAAGATATCCAGAAGGAACCG
ATTGATGAAGAAAAGAAGCCATTGGCTTAAACGATAAGCAATGCAGCAGT
TAAAAAACCTTATTGGTGAAGGATTCATTTACTATTCATTTACTATTCAT
GActtaatgttttctacggaaagaccccggtttttgccagtagtggcaaa
ttttatacaacttttgtttagtttaaatttgccactactggctaaagctg
gggtatttccgtaaaaaacattacgtcgtgaatatcatgaatagaaccAT
GTGTGAAATGTATTCAAAAGTCGTTGAGATGTAATGTAAAAATAGAAAGG
ATTTTTATGGAGAATTTAAGTTCATGTAAATTCCATTAAGCGGGTTATGG
GAACAACTTTATTTTGGTGCATTTATGGTCATCTTGTATGTGTTAGTTTT
TAATAAGCTTCATTTTAATCTCATTGTAGACTTGAAATTTATGTTGTAAA
TGTTTTAACACTTTTAGTCTTTTAGTCtagcaaaaatcataatttttatg
AAGTTCATAACTTTCTTCAGAACTTTTTTCAGAACTTCAGAAATTCTGTC
GATTTCTACTTTTTGTGGAAAATATCAGCTTCAACATTCAAAGGCTCAAA
CCTTTGCCCATTGATAATTGATAATAATGGTGTCATGATaagtattttac
aattttaaacTCTTAGAATAATCTTAAAAGcacatttaaaaatgaaaatc
agcaCTTCTTTGTTTGTGATTAAAATCTATAAAGTAAATTTtgtgttata
aaaaaaatctcaaaatgtcaaaaatattcgTTGATATTCATACATTTGGT
CCC Run BLAST on NCBI transcript from alignment at scaffold_167:494311..496259+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049905 ID=TCONS_00049905|Name=TCONS_00049905|organism=Clytia hemisphaerica|type=transcript|length=1949bp|location=Sequence derived from alignment at scaffold_167:494311..496259+ (Clytia hemisphaerica)
atggccaaaaaataagaatatcctaagaatatcaccatcatggaattttg
ctattcaagcaaagaatgtcatttttagagcattctaaattataaattgc
caattacccccaaagTAataagaatgctgtaagaatattttaggatgatt
ttcccaaaaaagttaagaatatccatgatgaaatggatttacaccattct
tataaaaaaaaaagcgtgtaataggCTTTCAGAAAATAGGAAGTTTAAAA
GAGAGGGGATAGATCAAAACATCTTTGAGACGAAATACTAGCAGTTAATA
ATTTAGAGCATATTTTGATAGTTTCTTGCTCACCGCGCCGAAGGAAAGGT
AAAAAGTAAGTTTCCATGTTCTTTAGAGTAAAGAGTGTCGATAGTGAAAC
CATCTGGCAATATGAGCTACAGGGGGTCTTATTTCCATCCAGGGTTTGTT
ATCTACAATTAGGGATATAAAATAAACTTTCacttttctttaaaattctA
GAATAGATATAAAGAAAATATGGGTTGCAATTTGAAGGTTGCTGCAATTG
TGGTTGCAACATTGACCATTACATTCTCCAGTTTGACTCTGGTCAAATTG
TCTTGTTCAGCTTTTAACCAATACAAGGAAAAGCAACAGATTGATAATGG
TGGTGTGCCGGCACCACGTCATGAACCTTTGGCACTCGAGACAACAACTG
CTGTACCGCCTAAGACACCGGAAAAGGCTTCTGCCTCCAGACGGTATAAG
GAAGTTGTTGAGAAATGGAGCAACAGATCAACAACGTATGTTGAACGTGT
AGTCGGGATCCTTGTCACCATCATGTCAATTGTGACGTCATTCATGGTCT
TCAATGCTGTCTCCGATGACTATGATTACAATGCTCGTAAACGTCATATG
ATCCTTCCTTTCGTTGTCTTCCACTCGCTCATCAATTTCTTCCACGCCGT
TGCAATCCTCTATATCGCAATCACATACCGCGAGTACATGGACGTCCTCC
TAGTCCCAGTCCTCATTTACATTGCAATGGTCTTTGTGACCGTTATTGGG
ATCTCCTTTGTAGGTGCATACCATAAAGCACTTGCGAGAATGGCAAAATC
TGCTGGATTTGGATATGCTCAGATGGAAGATATCCAGAAGGAACCGATTG
ATGAAGAAAAGAAGCCATTGGCTTAAACGATAAGCAATGCAGCAGTTAAA
AAACCTTATTGGTGAAGGATTCATTTACTATTCATTTACTATTCATGAct
taatgttttctacggaaagaccccggtttttgccagtagtggcaaatttt
atacaacttttgtttagtttaaatttgccactactggctaaagctggggt
atttccgtaaaaaacattacgtcgtgaatatcatgaatagaaccATGTGT
GAAATGTATTCAAAAGTCGTTGAGATGTAATGTAAAAATAGAAAGGATTT
TTATGGAGAATTTAAGTTCATGTAAATTCCATTAAGCGGGTTATGGGAAC
AACTTTATTTTGGTGCATTTATGGTCATCTTGTATGTGTTAGTTTTTAAT
AAGCTTCATTTTAATCTCATTGTAGACTTGAAATTTATGTTGTAAATGTT
TTAACACTTTTAGTCTTTTAGTCtagcaaaaatcataatttttatgAAGT
TCATAACTTTCTTCAGAACTTTTTTCAGAACTTCAGAAATTCTGTCGATT
TCTACTTTTTGTGGAAAATATCAGCTTCAACATTCAAAGGCTCAAACCTT
TGCCCATTGATAATTGATAATAATGGTGTCATGATaagtattttacaatt
ttaaacTCTTAGAATAATCTTAAAAGcacatttaaaaatgaaaatcagca
CTTCTTTGTTTGTGATTAAAATCTATAAAGTAAATTTtgtgttataaaaa
aaatctcaaaatgtcaaaaatattcgTTGATATTCATACATTTGGTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049905-exon-scaffold_167-1491911889:494311..494665 | TCONS_00049905-exon-scaffold_167-1491911889:494311..494665 | Clytia hemisphaerica | exon |
| TCONS_00049905-exon-scaffold_167-1510915933:494311..494665 | TCONS_00049905-exon-scaffold_167-1510915933:494311..494665 | Clytia hemisphaerica | exon |
| TCONS_00049905-exon-scaffold_167-1575043694:494311..494665 | TCONS_00049905-exon-scaffold_167-1575043694:494311..494665 | Clytia hemisphaerica | exon |
| TCONS_00049905-exon-scaffold_167-1491911889:494812..496259 | TCONS_00049905-exon-scaffold_167-1491911889:494812..496259 | Clytia hemisphaerica | exon |
| TCONS_00049905-exon-scaffold_167-1510915933:494812..496259 | TCONS_00049905-exon-scaffold_167-1510915933:494812..496259 | Clytia hemisphaerica | exon |
| TCONS_00049905-exon-scaffold_167-1575043694:494812..496259 | TCONS_00049905-exon-scaffold_167-1575043694:494812..496259 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:494311..496259 + |
Blast
The following BLAST results are available for this feature:
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