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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049908 ID=TCONS_00049908|Name=TCONS_00049908|organism=Clytia hemisphaerica|type=transcript|length=341bp
GTTGGAGTCTCCAGCCATCAATTTAACCGTTCTACaatttcCAGTTAGTC
GGTTGCGAATTGAAATAACTTCGTTTACCTTCAATCAAAAAAACATCCCT
GAAGTGAAATGGAACAAACCCAGCAATTACGACGGAATTGTCTGGTACTA
TGCGGAAATAAGAAGTTCAAAATATACTATTCTATATGGTCCCATCAACA
AAACCTCCTTTTGTGCTTACGGAGTAATGGATCCAAAAGTCGCAGTCGTA
TACGCTGAAAATAAATATACAAAAGGGAATCGCTCTGTTCCCATGGTTTT
TGATGGTAAATTCACCAACAAAAAGCCGAGGAGGAAATGGT Run BLAST on NCBI protein sequence of TCONS_00049908-protein >TCONS_00049908-protein ID=TCONS_00049908-protein|Name=TCONS_00049908-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
LESPAINLTVLQFPVSRLRIEITSFTFNQKNIPEVKWNKPSNYDGIVWYY
AEIRSSKYTILYGPINKTSFCAYGVMDPKVAVVYAENKYTKGNRSVPMVF
DGKFTNKKPRRKW Run BLAST on NCBI transcript from alignment at scaffold_167:553866..554832+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049908 ID=TCONS_00049908|Name=TCONS_00049908|organism=Clytia hemisphaerica|type=transcript|length=967bp|location=Sequence derived from alignment at scaffold_167:553866..554832+ (Clytia hemisphaerica)
GTTGGAGTCTCCAGCCATCAATTTAACCGTTCTACGTAAGTCATATCCTT
TGATTTTAAAAGCCACTAAGGGGCTAAAAAgtaatcttcaacctttctca
agcaagaaaaagtgaagccttaaaatttatAAGTGGCTTCATCTCTCATC
CCCAAGATACAATTAAGCCTAATCGGGGCTTTTAAATCAATGCAAGAGTT
ATATCTAAAAAGCCAAATTTTGTGGTGAATAAAAGgtaaaaatattcata
tttctCATTACCCTGCAATCCTAAAAGCGCGAACATCATCGAGATTTTTA
TTTGGATgatatttgatgaattttagcCCTGGTCTCGAGTATCGTGAAAA
AGATTGTGTAATCTGTAATGTAAGTGTCATGCCTCCAGTGCTAATCTCCT
CATCCTTCAAAAAAGAGATCAGAGGCATGGGAACAAGGTTGAATTGAATA
TTTCTAGCAAAATTATCGATCAGTACAGGTGAAAAGCTAATCTGGATTTT
TGGTTCATTAGTTCTATGACGTCCTCCTCTAGGTTTTTTTGACCCATAAA
ATCccaaataaaaatatacaaactatgtttaTGGATTGATCTCATTTCAC
TGAATAGAAAAATACACAGCAACTTGTATTGATATTCTTGTAGTGatact
tttttttatagaatttcCAGTTAGTCGGTTGCGAATTGAAATAACTTCGT
TTACCTTCAATCAAAAAAACATCCCTGAAGTGAAATGGAACAAACCCAGC
AATTACGACGGAATTGTCTGGTACTATGCGGAAATAAGAAGTTCAAAATA
TACTATTCTATATGGTCCCATCAACAAAACCTCCTTTTGTGCTTACGGAG
TAATGGATCCAAAAGTCGCAGTCGTATACGCTGAAAATAAATATACAAAA
GGGAATCGCTCTGTTCCCATGGTTTTTGATGGTAAATTCACCAACAAAAA
GCCGAGGAGGAAATGGT Coding sequence (CDS) from alignment at scaffold_167:553866..554832+ >TCONS_00049908 ID=TCONS_00049908|Name=TCONS_00049908|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_167:553866..554832+ (Clytia hemisphaerica)
TTGGAGTCTCCAGCCATCAATTTAACCGTTCTACaatttcCAGTTAGTCG
GTTGCGAATTGAAATAACTTCGTTTACCTTCAATCAAAAAAACATCCCTG
AAGTGAAATGGAACAAACCCAGCAATTACGACGGAATTGTCTGGTACTAT
GCGGAAATAAGAAGTTCAAAATATACTATTCTATATGGTCCCATCAACAA
AACCTCCTTTTGTGCTTACGGAGTAATGGATCCAAAAGTCGCAGTCGTAT
ACGCTGAAAATAAATATACAAAAGGGAATCGCTCTGTTCCCATGGTTTTT
GATGGTAAATTCACCAACAAAAAGCCGAGGAGGAAATGGTTGGAGTCTCC
AGCCATCAATTTAACCGTTCTACaatttcCAGTTAGTCGGTTGCGAATTG
AAATAACTTCGTTTACCTTCAATCAAAAAAACATCCCTGAAGTGAAATGG
AACAAACCCAGCAATTACGACGGAATTGTCTGGTACTATGCGGAAATAAG
AAGTTCAAAATATACTATTCTATATGGTCCCATCAACAAAACCTCCTTTT
GTGCTTACGGAGTAATGGATCCAAAAGTCGCAGTCGTATACGCTGAAAAT
AAATATACAAAAGGGAATCGCTCTGTTCCCATGGTTTTTGATGGTAAATT
CACCAACAAAAAGCCGAGGAGGAAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049908-exon-scaffold_167-1491911889:553866..553900 | TCONS_00049908-exon-scaffold_167-1491911889:553866..553900 | Clytia hemisphaerica | exon |
| TCONS_00049908-exon-scaffold_167-1510915933:553866..553900 | TCONS_00049908-exon-scaffold_167-1510915933:553866..553900 | Clytia hemisphaerica | exon |
| TCONS_00049908-exon-scaffold_167-1575043694:553866..553900 | TCONS_00049908-exon-scaffold_167-1575043694:553866..553900 | Clytia hemisphaerica | exon |
| TCONS_00049908-exon-scaffold_167-1491911889:554527..554832 | TCONS_00049908-exon-scaffold_167-1491911889:554527..554832 | Clytia hemisphaerica | exon |
| TCONS_00049908-exon-scaffold_167-1510915933:554527..554832 | TCONS_00049908-exon-scaffold_167-1510915933:554527..554832 | Clytia hemisphaerica | exon |
| TCONS_00049908-exon-scaffold_167-1575043694:554527..554832 | TCONS_00049908-exon-scaffold_167-1575043694:554527..554832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:553866..554832 + |
Blast
The following BLAST results are available for this feature:
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