TCONS_00053388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053388
Unique NameTCONS_00053388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053388 ID=TCONS_00053388|Name=TCONS_00053388|organism=Clytia hemisphaerica|type=transcript|length=556bp
TTCAGATGATGAAAAACTTCACGCGAAGGCTTGGCAAAACACACTGAAGG
ATGATTTTCTTGCACTCCACCGTATCGTCCGAAGGTGTTGTCTGGTACAA
GTGGACCAAGACGAAGAAAAGCAAATGAAGACAACACTTCGACATTTAAG
ATCTTCTAATTTCCCAATACACATGACATTAAAGCAACTCAAATTCCAGT
TCCCAAACGATACTGAGGAGTTACAAACAAAGTATTTGATACGCTGCATC
ATCGAAGTCAGCAACCTGAAATCTTTCAAACATCTAGcaattGGTAAATC
TCAAACGGAATCTGAAgatctaaaacaaaataattcaaaGGATGTGGAAA
ATAAAATGACTATGATCACATTTGAGGCTGAGCTCTCTTTATCCTCTGAG
AACGGAACTCCAGATTGCCTTTCTTTGgacactggaaaagaaaaacctGA
TGAGCAGGAAGAGAAGAGTCTTTCCCTGGCAGAAACTTTTGAGAAATTGg
atgtagaaaaagaagTTCCCTTGAGGCGGAGGTTTCTTTCCCTTCTGAAA
CAGgta
Run BLAST on NCBI

protein sequence of TCONS_00053388-protein

>TCONS_00053388-protein ID=TCONS_00053388-protein|Name=TCONS_00053388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
SDDEKLHAKAWQNTLKDDFLALHRIVRRCCLVQVDQDEEKQMKTTLRHLR
SSNFPIHMTLKQLKFQFPNDTEELQTKYLIRCIIEVSNLKSFKHLAIGKS
QTESEDLKQNNSKDVENKMTMITFEAELSLSSENGTPDCLSLDTGKEKPD
EQEEKSLSLAETFEKLDVEKEVPLRRRFLSLLKQV
Run BLAST on NCBI

transcript from alignment at scaffold_229:6988..8869-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053388 ID=TCONS_00053388|Name=TCONS_00053388|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at scaffold_229:6988..8869- (Clytia hemisphaerica)
TTCAGATGATGAAAAACTTCACGCGAAGGCTTGGCAAAACACACTGAAGG
ATGATTTTCTTGCACTCCACCGTATCGTCCGAAGGTGTTGTCTGGTACAA
GTGGACCAAGACGAAGAAAAGCAAATGAAGACAACACTTCGACATTTAAG
ATCTTCTAATTTCCCAATACACATGACATTAAAGCAACTCAAATTCCAGT
TCCCAAACGATACTGAGGAGTTACAAACAAAGTATTTGATACGCTGCATC
ATCGAAGTCAGCAACCTGAAATCTTTCAAACATCTAGGTAAATATAAACT
CCATTTTAAATTGAGAAAGTTCAATGCGAAATTTTTGAAAAAATATCTCT
ATATCTCCCTTGTTTTTTATGTTAAAATCAAGAAATTCAAAACCTCTTTA
AAACCATGTTGAAATATGTCCACACTGTGTTATAGTGGGTCATATATTGT
CGTCTGTCATTGTAAAGGGTCTTTTTTCCACATTTTACCAATAAAATAGC
ACTGAAGTCGAACTGATCATTTAGTTTATTGCAGGCGTCATTTACCTCCC
ATCAAGAAGGTTTAAATTAAACGGAATTATACTATGATAAGATGATTATT
GTAGTCAACTGTATTCTGTACTCCTCATCTCCACTGAATATGTTAAATAC
CGATAGAAATATCGATCTCATTTTTTAGCAATTGGTAAATCTCAAACGGA
ATCTGAAGATCTAAAACAAAATAATTCAAAGGTAGAAAATTAAGATAGAT
TTTTCTTTCTGTAGGGTGTCTTTACTGTCAAAAAGTCTATCTAGACATAT
TCTCAGGCTAAATTTCATAGAAGTCTTAGTACTATTTAGCAATGTGAATT
TGATTTTGAATTAGCGCTAATTAACCATTATTCGATACTTACCTGGTAAA
CTAATGCTTGTAATTCGAAACTTCTTTTAGACCCTGTAAGTAAATGGATA
CCCAGAAATTAGTTTGTGGTAGCGAATGTGTATTAAACTTTGTTATTTTT
TAGGATGTGGAAAATAAAATGACTATGATCACATTTGAGGCTGAGCTCTC
TTTATCCTCTGAGAACGGTAGGCTTCGTTTTTTGAAGGGAATCCGTCTGT
TTCGAGACTTGTACTTTTAGCTTACAGAGATTACTCAGCACATAGTAAGT
GGAAGGAGAGATGAAAGATGAAAGGGTAATGAAAGGGTATACCTGGGGGT
ACCAAGGCAGATGAGGTACGGGGAGGTGTCGCTGGTTTACTAGTTGTACT
TTGAGATTACAAACTTTTTTGAGGAAGCTGATTTCTGTTTGAAGTCACGA
GAGTAGGATTTCCTCTCCTTTCATACTTTTCCTTAGCTTAAAATTACATC
ATCAACTTGAGTTTTCAATTATTCTTTACTTTATTGATTTAGGAACTCCA
GATTGCCTTTCTTTGGACACTGGAAAAGAAAAACCTGATGAGCAGGAAGA
GAAGAGTCTTTCCCTGGCAGAAACTTTTGAGAAATTGGTACATACAGGAT
TAACTTTTAATATTGACTATTTTTTTCTAACCAAGATGAACCTAACCAAA
AGTTTATATACTATAAGGTACTTTCAAGTCTCACCTCAAACGACCGGCAC
AAACTGGTCAATCTTAGTAAAATGAGGAAAATTCAGCTACCTAATTTTCT
TCCTAATAGCCTTAGTGCGGGGACTTAATTTCGCAGGTGATTCACTGTAC
ATGTGAGATAACATAGATAGACCTTTTCAAATTTACATTTGAACCTAATT
CTGTGAAATCAGCTGAATTCTATCTCTAACTTCTAACTTCAGTGTGTGTT
CAATCCCCGGCACTTTTTATTTTAGGATGTAGAAAAAGAAGTTCCCTTGA
GGCGGAGGTTTCTTTCCCTTCTGAAACAGGTA

Coding sequence (CDS) from alignment at scaffold_229:6988..8869-

>TCONS_00053388 ID=TCONS_00053388|Name=TCONS_00053388|organism=Clytia hemisphaerica|type=CDS|length=2775bp|location=Sequence derived from alignment at scaffold_229:6988..8869- (Clytia hemisphaerica)
GATGTAGAAAAAGAAGTTCCCTTGAGGCGGAGGTTTCTTTCCCTTCTGAA
ACAGGTAGAACTCCAGATTGCCTTTCTTTGGACACTGGAAAAGAAAAACC
TGATGAGCAGGAAGAGAAGAGTCTTTCCCTGGCAGAAACTTTTGAGAAAT
TGGATGTGGAAAATAAAATGACTATGATCACATTTGAGGCTGAGCTCTCT
TTATCCTCTGAGAACGCAATTGGTAAATCTCAAACGGAATCTGAAGATCT
AAAACAAAATAATTCAAAGTCAGATGATGAAAAACTTCACGCGAAGGCTT
GGCAAAACACACTGAAGGATGATTTTCTTGCACTCCACCGTATCGTCCGA
AGGTGTTGTCTGGTACAAGTGGACCAAGACGAAGAAAAGCAAATGAAGAC
AACACTTCGACATTTAAGATCTTCTAATTTCCCAATACACATGACATTAA
AGCAACTCAAATTCCAGTTCCCAAACGATACTGAGGAGTTACAAACAAAG
TATTTGATACGCTGCATCATCGAAGTCAGCAACCTGAAATCTTTCAAACA
TCTAGGATGTAGAAAAAGAAGTTCCCTTGAGGCGGAGGTTTCTTTCCCTT
CTGAAACAGGTAGAACTCCAGATTGCCTTTCTTTGGACACTGGAAAAGAA
AAACCTGATGAGCAGGAAGAGAAGAGTCTTTCCCTGGCAGAAACTTTTGA
GAAATTGGATGTGGAAAATAAAATGACTATGATCACATTTGAGGCTGAGC
TCTCTTTATCCTCTGAGAACGCAATTGGTAAATCTCAAACGGAATCTGAA
GATCTAAAACAAAATAATTCAAAGTCAGATGATGAAAAACTTCACGCGAA
GGCTTGGCAAAACACACTGAAGGATGATTTTCTTGCACTCCACCGTATCG
TCCGAAGGTGTTGTCTGGTACAAGTGGACCAAGACGAAGAAAAGCAAATG
AAGACAACACTTCGACATTTAAGATCTTCTAATTTCCCAATACACATGAC
ATTAAAGCAACTCAAATTCCAGTTCCCAAACGATACTGAGGAGTTACAAA
CAAAGTATTTGATACGCTGCATCATCGAAGTCAGCAACCTGAAATCTTTC
AAACATCTAGGATGTAGAAAAAGAAGTTCCCTTGAGGCGGAGGTTTCTTT
CCCTTCTGAAACAGGTAGAACTCCAGATTGCCTTTCTTTGGACACTGGAA
AAGAAAAACCTGATGAGCAGGAAGAGAAGAGTCTTTCCCTGGCAGAAACT
TTTGAGAAATTGGATGTGGAAAATAAAATGACTATGATCACATTTGAGGC
TGAGCTCTCTTTATCCTCTGAGAACGCAATTGGTAAATCTCAAACGGAAT
CTGAAGATCTAAAACAAAATAATTCAAAGTCAGATGATGAAAAACTTCAC
GCGAAGGCTTGGCAAAACACACTGAAGGATGATTTTCTTGCACTCCACCG
TATCGTCCGAAGGTGTTGTCTGGTACAAGTGGACCAAGACGAAGAAAAGC
AAATGAAGACAACACTTCGACATTTAAGATCTTCTAATTTCCCAATACAC
ATGACATTAAAGCAACTCAAATTCCAGTTCCCAAACGATACTGAGGAGTT
ACAAACAAAGTATTTGATACGCTGCATCATCGAAGTCAGCAACCTGAAAT
CTTTCAAACATCTAGGATGTAGAAAAAGAAGTTCCCTTGAGGCGGAGGTT
TCTTTCCCTTCTGAAACAGGTAGAACTCCAGATTGCCTTTCTTTGGACAC
TGGAAAAGAAAAACCTGATGAGCAGGAAGAGAAGAGTCTTTCCCTGGCAG
AAACTTTTGAGAAATTGGATGTGGAAAATAAAATGACTATGATCACATTT
GAGGCTGAGCTCTCTTTATCCTCTGAGAACGCAATTGGTAAATCTCAAAC
GGAATCTGAAGATCTAAAACAAAATAATTCAAAGTCAGATGATGAAAAAC
TTCACGCGAAGGCTTGGCAAAACACACTGAAGGATGATTTTCTTGCACTC
CACCGTATCGTCCGAAGGTGTTGTCTGGTACAAGTGGACCAAGACGAAGA
AAAGCAAATGAAGACAACACTTCGACATTTAAGATCTTCTAATTTCCCAA
TACACATGACATTAAAGCAACTCAAATTCCAGTTCCCAAACGATACTGAG
GAGTTACAAACAAAGTATTTGATACGCTGCATCATCGAAGTCAGCAACCT
GAAATCTTTCAAACATCTAGGATGTAGAAAAAGAAGTTCCCTTGAGGCGG
AGGTTTCTTTCCCTTCTGAAACAGGTAGAACTCCAGATTGCCTTTCTTTG
GACACTGGAAAAGAAAAACCTGATGAGCAGGAAGAGAAGAGTCTTTCCCT
GGCAGAAACTTTTGAGAAATTGGATGTGGAAAATAAAATGACTATGATCA
CATTTGAGGCTGAGCTCTCTTTATCCTCTGAGAACGCAATTGGTAAATCT
CAAACGGAATCTGAAGATCTAAAACAAAATAATTCAAAGTCAGATGATGA
AAAACTTCACGCGAAGGCTTGGCAAAACACACTGAAGGATGATTTTCTTG
CACTCCACCGTATCGTCCGAAGGTGTTGTCTGGTACAAGTGGACCAAGAC
GAAGAAAAGCAAATGAAGACAACACTTCGACATTTAAGATCTTCTAATTT
CCCAATACACATGACATTAAAGCAACTCAAATTCCAGTTCCCAAACGATA
CTGAGGAGTTACAAACAAAGTATTTGATACGCTGCATCATCGAAGTCAGC
AACCTGAAATCTTTCAAACATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033701XLOC_033701Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053388-proteinTCONS_00053388-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053388-exon-scaffold_229-1575043694:8583..8869TCONS_00053388-exon-scaffold_229-1575043694:8583..8869Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1575043694:8139..8191TCONS_00053388-exon-scaffold_229-1575043694:8139..8191Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1575043694:7803..7866TCONS_00053388-exon-scaffold_229-1575043694:7803..7866Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1575043694:7383..7477TCONS_00053388-exon-scaffold_229-1575043694:7383..7477Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1575043694:6988..7044TCONS_00053388-exon-scaffold_229-1575043694:6988..7044Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1510915933:8583..8869TCONS_00053388-exon-scaffold_229-1510915933:8583..8869Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1510915933:8139..8191TCONS_00053388-exon-scaffold_229-1510915933:8139..8191Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1510915933:7803..7866TCONS_00053388-exon-scaffold_229-1510915933:7803..7866Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1510915933:7383..7477TCONS_00053388-exon-scaffold_229-1510915933:7383..7477Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1510915933:6988..7044TCONS_00053388-exon-scaffold_229-1510915933:6988..7044Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1491911889:8583..8869TCONS_00053388-exon-scaffold_229-1491911889:8583..8869Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1491911889:8139..8191TCONS_00053388-exon-scaffold_229-1491911889:8139..8191Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1491911889:7803..7866TCONS_00053388-exon-scaffold_229-1491911889:7803..7866Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1491911889:7383..7477TCONS_00053388-exon-scaffold_229-1491911889:7383..7477Clytia hemisphaericaexon
TCONS_00053388-exon-scaffold_229-1491911889:6988..7044TCONS_00053388-exon-scaffold_229-1491911889:6988..7044Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_229supercontigscaffold_229:6988..8869 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.48027	6.973	3.80097	8.36804	5.42788	5.23643	8.07957	4.40787	11.0156	12.4284	0	0	0	0	0	0	0	0	0	0	0	6.17204	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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