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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050055 ID=TCONS_00050055|Name=TCONS_00050055|organism=Clytia hemisphaerica|type=transcript|length=1715bp
aTATATTTCagtaattaataaaaaaaaagaagaagtaaATATAAATGGCA
ATTGGGGGAGGGGGATTTGGAGTGGTGGTTGGGGCAATTATTTGGATTTG
GCAGCAGCCAAGTCAACTTTCTTTTGATACTGGAGAACTTCATCATCATC
ACTAGAGGCGACATCAGCCATCAATCCTTCACGGTCACTTCCCAATGATT
GCCGTAACTTATTGCTTCGTTTGTAAATACATGCTGCGATAGCCACAATG
GCGATCAGTATTGGTAAGCCGATTGAAAGACCTGACCAAAGAAAAGAAGG
ATAGTGCCTAGAACGTATCCAACGCAAACATTCACGAGTGATTAACGCCA
ACATCGGAGATACCATCAAATTAGAATGGAAGTATACAGTACCTAAGGAT
GCTTTAGTTTTATTCAATTGTGGTTATAGAAATGAAGCACTTAATCCAAG
CAGCACTAAGGATCCACCTTTGGTCACGTTAGCATTAACCCAGAAAGTTA
AAGAGTTTATGATCACAAAGAAAGCAAGCAGTGATTTACAATCTACTCTT
CGAGCGACAGACTCTTTAGAACTTAAAAATCTGGCGTCCGCCCATCGTGA
CACCATAAATGAGGCTTGTGTGTTACAACTGCAAAATATACCAGTTGAAA
TTGAAAGTGCTTCGCTACAGTGCAAATTAACATGGAAAgtgaacaataaa
aatgaatACATGCACGGTGGTGAAACTCAAGTCAAAATTAAAGACAACTC
TGGATCATCGAGCCCTCAGTCGTCCCAGTCTTCCACTCCATGTGCTGGCT
CAAAATCATCATCACGTGTGCGTGGAGAAATCTTTTTAGGTgctatttta
tttgatttgttaCTCGTTGTCTTTATGATGAGTGCTTCATTGATATTGTC
ACGTAGAAGGGAAGGCTATGAGGCTCCCAagaaacaaaccaaaaaattaa
ccaagaaatcaaaacaaaaacgagATGTAGAAAAAGGTGGTAAGTCAGAG
AAAAAGACGAAAAGCAAAGATGATggcaaaaaagaagaaaagaaaaaatc
ccCCTCTGAGGATAAGAAGAAGAAGAGTAGCTCTGATAAAAGTTCAAAAC
GAGAGAGAGGAAGTTCCGGAAAATCGGGTGAACGAAAGGAAGGTGTACGA
TCGGAACGCTCCAAAACGGAGTCATCAAAGCAAGCTGGTGTTCCGAAAGA
ATCTTCAAGATCTTCATCCGGACGTGGTCGTGAGCGGAAAGGAGGCACAT
CCGGTGGTGGCTCGAAAAGGCGTTCAGAGCGTTCCGAATCATCTAGGCGT
AAATAGTTTATAGAGgaaatgaaattatgaaatgataataaaatataAGT
GAATTGAAATACGGAAACATGAAATTTACAAACAATTTGCTTCAAATTAT
CTGGGAAAAAACTCACTGACAAAAATTTGGAAGAACCTGGATGAATTTCG
CTCTGCGGGGTGGCCGGAAAATAACATTAATAaatttttggtttattttt
tgaCCCCCCTGttttaacaaaattattttcattgtattttaaaGGAATTT
CTTGGTGGTaccaaaaatgtatatttttttgtttttgggtAGTTTTTAGT
TCCCATTTTCCCTTTTACCTAACGGCCGATTATAATTTTGGTCCCGTGAT
TTAATTTCTAGCTTATCTTTTTGGGACCACCCTGTTATTTTCTttatatc
attttattttttccg Run BLAST on NCBI protein sequence of TCONS_00050055-protein >TCONS_00050055-protein ID=TCONS_00050055-protein|Name=TCONS_00050055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MITKKASSDLQSTLRATDSLELKNLASAHRDTINEACVLQLQNIPVEIES
ASLQCKLTWKVNNKNEYMHGGETQVKIKDNSGSSSPQSSQSSTPCAGSKS
SSRVRGEIFLGAILFDLLLVVFMMSASLILSRRREGYEAPKKQTKKLTKK
SKQKRDVEKGGKSEKKTKSKDDGKKEEKKKSPSEDKKKKSSSDKSSKRER
GSSGKSGERKEGVRSERSKTESSKQAGVPKESSRSSSGRGRERKGGTSGG
GSKRRSERSESSRRK Run BLAST on NCBI transcript from alignment at scaffold_167:661533..666476- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050055 ID=TCONS_00050055|Name=TCONS_00050055|organism=Clytia hemisphaerica|type=transcript|length=4944bp|location=Sequence derived from alignment at scaffold_167:661533..666476- (Clytia hemisphaerica)
ATATATTTCAGTAATTAATAAAAAAAAAGAAGAAGTAAATATAAATGGCA
ATTGGGGGAGGGGGATTTGGAGTGGTGGTTGGGGCAATTATTTGGATTTG
GCAGCAGCCAAGTCAACTTTCTTTTGATACTGGAGAACTTCATCATCATC
ACTAGAGGCGACATCAGCCATCAATCCTTCACGGTCACTTCCCAATGATT
GCCGTAACTTATTGCTTCGTTTGTAAATACATGCTGCGATAGCCACAATG
GCGATCAGTATTGGTAAGCCGATTGAAAGACCTGACCAAAGAAAAGAAGG
ATAGGTAAGTTTTCATATGCAAGGTACTTTATTTGAATAACCAGGGGTCT
TATTTTGGTCTGATTAACGCCGAATTCAAAGAAAGATATATTCACGGTGT
AATCAAGTTGACCGGACTTAAATTGTCATTTTTGCCTACATAGCAGAAAT
CATGGAAATAGAAAATTTTAACTACCTTAATGGTTCTTTTTACCGGCTCT
TGTTACGCCAAATCGCAACTATTTCTATTATTAGCCCGGTTCTAATTTAA
TTCCAATCTTTTATATGAATAATACCAATAACGGCCGGTGAAAAAAGAGC
CGGTAAGATTTTGCTTAAAACCTGATTATTAGAGTACTAAATCTGGCATT
TTCTTAATGTTATCGAAATATCATCTATCAAACAAACGAAATTCTATTAT
GTACCGACTCTTGCTGAAAAACTTACTCAAAACTTTCATGCACCACAGTC
ATCCTTTAGACCTTCGTATAACAATATCTTCAATATTTCTGCCAACTTCT
ATTACCTAATGACTTAGTTTCTTTTCTCAAAAGCCTGTTAAAATTATCTT
GGGAATTGAGAATCACATCATGGAAGGATGTTCATCACAGAAACATGAAA
CTACCTTTGTGTCATTAAGAGATTTGAATCTGAATTTTATTTTTTTAAAT
TTTTATTCATAAAATCATATTTGTTTATAAAAGTTTTTCAGCAAGTGTAA
GTAAGTGATCACTTACCGATAGCCCAGCCTGGGAAGGAGCCTGATTTTTT
CTTCTCTTTATTTGAACGGTCTCTTGCCGATTGCTGTCCTCTATATTCCA
ATGCTTGAGGGGGCCGAGCATGTCCGTATTTTGTCGTTACCGTAATTTTT
CCTTCATATTGTATCCCGGAAATTGGAGTTTTCTGATATCCACATTCAAA
GGTACCAGCATCAGTAAAGGTGTATTTGGTCAAAGTTATGCCACGTTCTG
CTATTTTCGAACCGTGGTTTACAGCGTAACTGTTCTTAATGCGTCCAAGT
AATTTCTTATCATCCTTAGGGGCATCGTGTACTTGGTGAGATATAGAAAA
CTCCTTACCTAAAATAATAATAGTAATATGTGGGTGTTATGAAAGTTCTG
TTGGTGTTTTGTGTCATATAAGTACGTGTTAATGAGCAAGCATTTTCTGG
CTCAAATCTTAAACGAACTTTAGTATTTGCTAAGCCTCAGGCTTCCGAAA
CATTCAAATCCCAAAAATATTAAAAACACGCATAATGTCCAATTTACTTC
ACCCCATAAGCAAAGCATTGATAGACCTCAAACAAGTAGTGTTATAAGGA
TAATGAGGCTTTCAAAGATGTATCTTATGCTTAGAAAAAAACTTGTTAGT
TAGGAAAAACTTACCATTGAAGTCTGCAGCCAGTATAACGAATTGTTGTT
CCAAGTTGAAATATCCACAGAAGAATCTATGAAGACGCGCCCGTCTTTGA
TAGCGCCATATAAATTCAACTGAATCACCAGGCTTTACTTTTGCCTCGGT
GCTGAAAGGTTGTTGCACCTGCAAAAGAGATTGATACAATTTTTAATGAG
TAAAGAAACGGCAAAGTTTTATTTCATTTCAGCACTAGATAGATGTTCAA
AATCTGTTTGTTAAAAGTTTTACTTTAATATCTAGCACTGAAGATAGTTT
TTTACCGAAAAGATTTTGCTGAAAGAAAATATTTTAGTTTTCATTGAATG
GAAGAGGATGGAAGCCGCTACCTACTCTCGTGAATGAACAGCCTACCTAA
TGAACAGCCTCTAGAAGAGCCAGAAACCTGCCATGAGGAAGAATGGATTA
ATGGGAGTAAGTTTATTCAGTACTGAGTGAAGAATATCAGTAGAAAGTTT
CATAAAGAAGATTCAAAAACGTGAAACTTTGCTCTCAAACATCAACTTTC
TTGGTTATGAGAATGTGGAGTGAGAATGCTGTGAGATTTCTTTCCTGTGT
ACCTCTCAAACTTGGTAACAAGAAAAGCGAAAACTTACCTCTACAATAGA
AGATGTAGATGTGTGTAGAAGATTAGCAAAAGCTAAAAGAACGAAAAAGC
ATAGAAAAGAGCGTTGGAGAGCCATAGTTGTGTGCTAAAGCAAGTACCAA
TTTGATCTGATTTCTTTTCCAAAATTTGTGTCTCCTCGTAGCAAGTTATG
TTCAATCTCAAAGTTTTGTATCTGACGTCAATTATTTTTCACATTTTTTT
TGTGTGACGTCAAATATTTTTAATCCCCATAGCACCCGTATTTTGGTTTA
AAAAAAACAAAGTATCAACTTTTCAAACAAAAAAAATGGATAAAAATGGT
TGACGACAACCACCATGTCTTCTTAACAATATGTGGTTGAAATTTCTTTT
ATTTTTATTATGGTTTAATTTTCAACAGTGCCTAGAACGTATCCAACGCA
AACATTCACGAGTGATTAACGCCAACATCGGAGATACCATCAAATTAGAA
TGGAAGTATACAGTACCTAAGGATGCTTTAGTTTTATTCAATTGTGGTTA
TAGAAATGAAGGTAAGCCCTAAGCTTTGGCAAAAGGTAAAACACAATCCA
TACTTTTGATATAGATATGTCTATAGATTCTTGGGGGTAGTTTAAATGCC
TTGACTTTGGTATTGGTTTATTTTGTGAATGTCCCAAATACGATTTTCGA
TGAAGATTAAATTTTGGCTAGATTTACAGAAAAAAAAATAACGGAAGCTA
CTGTGAAATTTACGAAAATCTTCCTGTCAAATTGTGGCCTAGATATAAAT
CATCAATTTCGCCATTGTCGCCAGATTTATACACTCAAAATTAATACGCT
TAGGTAAAAAGGGTTGATTACTGTTTGATTAAAAATTTATTATCTATCTT
TTTTTGCATAGCACTTAATCCAAGCAGCACTAAGGATCCACCTTTGGTCA
CGTTAGCATTAACCCAGAAAGTTAAAGAGTTTATGATCACAAAGAAAGCA
AGCAGTGATTTACAATCTACTCTTCGAGCGACAGACTCTTTAGAACTTAA
AAATCTGGCGTCCGCCCATCGTGACACCATAAATGAGGCTTGTGTGTTAC
AACTGCAAAATATACCAGTTGAAATTGAAAGTGCTTCGCTACAGTGCAAA
TTAACATGGAAAGTGAACAATAAAAATGAATACATGCACGGTATGTTTTT
TACTTAAATCTTATTCAATCTTCAGAATTTTCGGTTCTTTAAGACCTAGC
GACCTTTAGAAAGACTGAGTTTTCCAAATATACCAAAGCTATTTAATAAG
ATTCGTGTTTCTGTCATTTTTATTTTTCAAATTACTAATAAGTTCACCTA
AACGTTGTGGTAAGTGACTCAAGAATAATTTAGTAACCCCTTTAAATTCC
TTACCGTCGTTTTGTATAAGATTCCACGATTCCAAGATTTTCTGATTTTT
CCCGCATTTTTCCGCTATTTTTCTCGGGATAACCGGCATGAGATTGGAAA
GTTTTTTCTAAAGGTACGGAAAATCCTGTGTTTACTTACGAATTGCTTGA
CTTTCCGAAGCTTAAGAAAAGAGGCAGTGAAAAGCGACGGTATACTATCT
TCCGACGTTTCTCGGTGTTTAACGGTTGTTGTTGATCAAAATTTCTTGAT
TAAATTAGTTTCACTATTGTTTTTTATTCCTAACTTCTACTTCAGGTGGT
GAAACTCAAGTCAAAATTAAAGACAACTCTGGATCATCGAGCCCTCAGTC
GTCCCAGTCTTCCACTCCATGTGCTGGCTCAAAATCATCATCACGTGTGC
GTGGAGAAATCTTTTTAGGTGCTATTTTATTTGATTTGTTACTCGTTGTC
TTTATGATGAGTGCTTCATTGATATTGTCACGTAGAAGGGAAGGCTATGA
GGCTCCCAAGAAACAAACCAAAAAATTAACCAAGAAATCAAAACAAAAAC
GAGATGTAGAAAAAGGTGGTAAGTCAGAGAAAAAGACGAAAAGCAAAGAT
GATGGCAAAAAAGAAGAAAAGAAAAAATCCCCCTCTGAGGATAAGAAGAA
GAAGAGTAGCTCTGATAAAAGTTCAAAACGAGAGAGAGGAAGTTCCGGAA
AATCGGGTGAACGAAAGGAAGGTGTACGATCGGAACGCTCCAAAACGGAG
TCATCAAAGCAAGCTGGTGTTCCGAAAGAATCTTCAAGATCTTCATCCGG
ACGTGGTCGTGAGCGGAAAGGAGGCACATCCGGTGGTGGCTCGAAAAGGC
GTTCAGAGCGTTCCGAATCATCTAGGCGTAAATAGTTTATAGAGGAAATG
AAATTATGAAATGATAATAAAATATAAGTGAATTGAAATACGGAAACATG
AAATTTACAAACAATTTGCTTCAAATTATCTGGGAAAAAACTCACTGACA
AAAATTTGGAAGAACCTGGATGAATTTCGCTCTGCGGGGTGGCCGGAAAA
TAACATTAATAAATTTTTGGTTTATTTTTTGACCCCCCTGTTTTAACAAA
ATTATTTTCATTGTATTTTAAAGGAATTTCTTGGTGGTACCAAAAATGTA
TATTTTTTTGTTTTTGGGTAGTTTTTAGTTCCCATTTTCCCTTTTACCTA
ACGGCCGATTATAATTTTGGTCCCGTGATTTAATTTCTAGCTTATCTTTT
TGGGACCACCCTGTTATTTTCTTTATATCATTTTATTTTTTCCG Coding sequence (CDS) from alignment at scaffold_167:661533..666476- >TCONS_00050055 ID=TCONS_00050055|Name=TCONS_00050055|organism=Clytia hemisphaerica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_167:661533..666476- (Clytia hemisphaerica)
GTGGTGAAACTCAAGTCAAAATTAAAGACAACTCTGGATCATCGAGCCCT
CAGTCGTCCCAGTCTTCCACTCCATGTGCTGGCTCAAAATCATCATCACG
TGTGCGTGGAGAAATCTTTTTAGGTGCTATTTTATTTGATTTGTTACTCG
TTGTCTTTATGATGAGTGCTTCATTGATATTGTCACGTAGAAGGGAAGGC
TATGAGGCTCCCAAGAAACAAACCAAAAAATTAACCAAGAAATCAAAACA
AAAACGAGATGTAGAAAAAGGTGGTAAGTCAGAGAAAAAGACGAAAAGCA
AAGATGATGGCAAAAAAGAAGAAAAGAAAAAATCCCCCTCTGAGGATAAG
AAGAAGAAGAGTAGCTCTGATAAAAGTTCAAAACGAGAGAGAGGAAGTTC
CGGAAAATCGGGTGAACGAAAGGAAGGTGTACGATCGGAACGCTCCAAAA
CGGAGTCATCAAAGCAAGCTGGTGTTCCGAAAGAATCTTCAAGATCTTCA
TCCGGACGTGGTCGTGAGCGGAAAGGAGGCACATCCGGTGGTGGCTCGAA
AAGGCGTTCAGAGCGTTCCGAATCATCTAGGCGTAAATAGATGATCACAA
AGAAAGCAAGCAGTGATTTACAATCTACTCTTCGAGCGACAGACTCTTTA
GAACTTAAAAATCTGGCGTCCGCCCATCGTGACACCATAAATGAGGCTTG
TGTGTTACAACTGCAAAATATACCAGTTGAAATTGAAAGTGCTTCGCTAC
AGTGCAAATTAACATGGAAAGTGAACAATAAAAATGAATACATGCACGGT
GGTGAAACTCAAGTCAAAATTAAAGACAACTCTGGATCATCGAGCCCTCA
GTCGTCCCAGTCTTCCACTCCATGTGCTGGCTCAAAATCATCATCACGTG
TGCGTGGAGAAATCTTTTTAGGTGCTATTTTATTTGATTTGTTACTCGTT
GTCTTTATGATGAGTGCTTCATTGATATTGTCACGTAGAAGGGAAGGCTA
TGAGGCTCCCAAGAAACAAACCAAAAAATTAACCAAGAAATCAAAACAAA
AACGAGATGTAGAAAAAGGTGGTAAGTCAGAGAAAAAGACGAAAAGCAAA
GATGATGGCAAAAAAGAAGAAAAGAAAAAATCCCCCTCTGAGGATAAGAA
GAAGAAGAGTAGCTCTGATAAAAGTTCAAAACGAGAGAGAGGAAGTTCCG
GAAAATCGGGTGAACGAAAGGAAGGTGTACGATCGGAACGCTCCAAAACG
GAGTCATCAAAGCAAGCTGGTGTTCCGAAAGAATCTTCAAGATCTTCATC
CGGACGTGGTCGTGAGCGGAAAGGAGGCACATCCGGTGGTGGCTCGAAAA
GGCGTTCAGAGCGTTCCGAATCATCTAGGCGTAAATAGATGATCACAAAG
AAAGCAAGCAGTGATTTACAATCTACTCTTCGAGCGACAGACTCTTTAGA
ACTTAAAAATCTGGCGTCCGCCCATCGTGACACCATAAATGAGGCTTGTG
TGTTACAACTGCAAAATATACCAGTTGAAATTGAAAGTGCTTCGCTACAG
TGCAAATTAACATGGAAAGTGAACAATAAAAATGAATACATGCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050055-exon-scaffold_167-1575043694:666173..666476 | TCONS_00050055-exon-scaffold_167-1575043694:666173..666476 | Clytia hemisphaerica | exon |
| TCONS_00050055-exon-scaffold_167-1575043694:663666..663798 | TCONS_00050055-exon-scaffold_167-1575043694:663666..663798 | Clytia hemisphaerica | exon |
| TCONS_00050055-exon-scaffold_167-1575043694:663037..663315 | TCONS_00050055-exon-scaffold_167-1575043694:663037..663315 | Clytia hemisphaerica | exon |
| TCONS_00050055-exon-scaffold_167-1575043694:661533..662531 | TCONS_00050055-exon-scaffold_167-1575043694:661533..662531 | Clytia hemisphaerica | exon |
| TCONS_00050055-exon-scaffold_167-1510915933:666173..666476 | TCONS_00050055-exon-scaffold_167-1510915933:666173..666476 | Clytia hemisphaerica | exon |
| TCONS_00050055-exon-scaffold_167-1510915933:663666..663798 | TCONS_00050055-exon-scaffold_167-1510915933:663666..663798 | Clytia hemisphaerica | exon |
| TCONS_00050055-exon-scaffold_167-1510915933:663037..663315 | TCONS_00050055-exon-scaffold_167-1510915933:663037..663315 | Clytia hemisphaerica | exon |
| TCONS_00050055-exon-scaffold_167-1510915933:661533..662531 | TCONS_00050055-exon-scaffold_167-1510915933:661533..662531 | Clytia hemisphaerica | exon |
| TCONS_00050055-exon-scaffold_167-1491911889:666173..666476 | TCONS_00050055-exon-scaffold_167-1491911889:666173..666476 | Clytia hemisphaerica | exon |
| TCONS_00050055-exon-scaffold_167-1491911889:663666..663798 | TCONS_00050055-exon-scaffold_167-1491911889:663666..663798 | Clytia hemisphaerica | exon |
| TCONS_00050055-exon-scaffold_167-1491911889:663037..663315 | TCONS_00050055-exon-scaffold_167-1491911889:663037..663315 | Clytia hemisphaerica | exon |
| TCONS_00050055-exon-scaffold_167-1491911889:661533..662531 | TCONS_00050055-exon-scaffold_167-1491911889:661533..662531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:661533..666476 - |
Blast
The following BLAST results are available for this feature:
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