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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050060 ID=TCONS_00050060|Name=TCONS_00050060|organism=Clytia hemisphaerica|type=transcript|length=6005bpRun BLAST on NCBI transcript from alignment at scaffold_167:724789..754041- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050060 ID=TCONS_00050060|Name=TCONS_00050060|organism=Clytia hemisphaerica|type=transcript|length=29253bp|location=Sequence derived from alignment at scaffold_167:724789..754041- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050060 vs. Swiss-Prot (Human)
Match: ANKH1 (Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 1.251e-81 Identity = 191/493 (38.74%), Postives = 275/493 (55.78%), Query Frame = 2
Query: 383 LLEACSQGHVTVANYLLENGSKIDAPTETTLDSALTWACTLGNTCIVDALLVKNADVEHRTKDG-CTALMFACLAGHRDVAEKLLDASSEINVESESNKDSPLTFACWKGHYDVVELLLQRSANIEHRTKEGFSPLMFAALGGHSKVAHKLLQTDAQVNVPSGSNNDIPLTSACWKGHHNVVKLLLDYESNIEHRTKDGCTPLMLAAREGHIYVADLLLKNNAQVNVPSGSENNIPLTLACWKGHWDVVRLLLDHNSDIEHRNKAGCTPLMLASREGHYETTALLLEKGAQVNVPSGSNDDTPLTLACWKGHKNVVLLLLDAKSNIDHQTKTGC-TPLMEATREGHKDVAEILLNHNADVELPDNYGQSPLFMACWKGHRNVADLLLNRNAYRDCRTKTGITPLFQACRENHISIVELLLEYGAGVNTPFPNSRENPLTLCAEKGHQELVGLLLMKGATLDCQTKKGCTPIFLSCKEGHLEISKVLLNQGANL 1855
L EACS G V LL+ G ++ TE +S L AC+ G + LL +A+VE R G T LM A G+ D+ + LL +++N +S + ++ LT+AC G D+V++LL ANIE + G +PLM AA GH +VA LL A +N S + LT AC+KGH ++V+ LL+ ++ EH+T + T LM A +GH+ VA LLL + AQVN+P+ S + PLTLA GH ++ LL++ +++E N G TPLM A+REGH E ALLL +GA +N + +T LTLAC G V L+ A ++I+ GC TPLMEA++EGH ++ + LL A+V G + L AC GH +VAD+LL A + ++ G TPL +A R H+ V+ L+ GA VN N+ ++L GH +V LLL GA + K G T + + K GH + LL+ N+
Sbjct: 209 LAEACSDGDVNAVRKLLDEGRSVNEHTEEG-ESLLCLACSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSATG-NTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFES-PLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIE----LGCSTPLMEASQEGHLELVKYLLASGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNV 694 HSP 2 Score: 290.426 bits (742), Expect = 1.470e-78 Identity = 186/468 (39.74%), Postives = 265/468 (56.62%), Query Frame = 2
Query: 248 SINEPDVSLDEMLSLACRQGKLDIVQLLLQSGAHVNHR-NKAGNTPLLEACSQGHVTVANYLLENGSKIDAPTETTLDSALTWACTLGNTCIVDALLVKNADVEHRTKDGCTALMFACLAGHRDVAEKLLDASSEINVESESNKDSPLTFACWKGHYDVVELLLQRSANIEHRTKEGFSPLMFAALGGHSKVAHKLLQTDAQVNVPSGSNNDIPLTSACWKGHHNVVKLLLDYESNIEHRTKDGCTPLMLAAREGHIYVADLLLKNNAQVNVPSGSENNIPLTLACWKGHWDVVRLLLDHNSDIEHRNKAGC-TPLMLASREGHYETTALLLEKGAQVNVPSGSNDDTPLTLACWKGHKNVVLLLLDAKSNIDHQTKTGCTPLMEATREGHKDVAEILLNHNADV-ELPDNYGQSPLFMACWKGHRNVADLLLNRNAYRDCRTKTGITPLFQACRENHISIVELLLEY 1642
S+NE + +L LAC G ++ Q+LL A+V R NK TPL+ A S G++ + LL + + +++ + T ++ALT+AC G IV LL + A++E ++G T LM A AGH +VA LLD + IN S K+S LT AC+KGH D+V LL+ A+ EH+T E + LM A + GH +VA LL + AQVN+P+ S + PLT A GH + LL++ +N+E +G TPLM AAREGH + LLL A +N + LTLAC G +V L+ +DIE GC TPLM AS+EGH E LL GA V+ + + DT LT AC GH +V +LL A ++++H+++ G TPLM+A R GH + L++ A+V N + + +AC GH V +LLL A R K G T L +A + H ++V LL+Y
Sbjct: 230 SVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSATG-NTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADS-FESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIE----LGCSTPLMEASQEGHLELVKYLLASGANVHATTATG-DTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDY 690 HSP 3 Score: 275.404 bits (703), Expect = 5.047e-74 Identity = 163/403 (40.45%), Postives = 239/403 (59.31%), Query Frame = 2
Query: 251 INEPDVSLDEMLSLACRQGKLDIVQLLLQSGAHVNHRNKAGNTPLLEACSQGHVTVANYLLENGSKIDAPTETTLDSALTWACTLGNTCIVDALLVKNADVEHRTKDGCTALMFACLAGHRDVAEKLLDASSEINVESESNKDSPLTFACWKGHYDVVELLLQRSANIEHRTKEGFSPLMFAALGGHSKVAHKLLQTDAQVNVPSGSNNDIPLTSACWKGHHNVVKLLLDYESNIEHRTKDGC-TPLMLAAREGHIYVADLLLKNNAQVNVPSGSENNIPLTLACWKGHWDVVRLLLDHNSDIEHRNKAGCTPLMLASREGHYETTALLLEKGAQVNVPSGSNDDTPLTLACWKGHKNVVLLLLDAKSNIDHQTKTGCTPLMEATREGHKDVAEILLNHNADV 1456
+N + + L+ AC G +DIV++LL GA++ N+ G+TPL+EA S GHV VA LL++G+ I+ + +SALT AC G+ +V LL AD EH+T + TALM AC+ GH +VA LLD+ +++N+ ++S +SPLT A GH ++ LL++R AN+E EG++PLM AA GH ++ LL A +N + + LT AC G V L+ ++IE GC TPLM A++EGH+ + LL + A V+ + + + LT AC GH DV +LL +D+EH ++ G TPLM A+R GH T L+ KGA VN + +ND T ++LAC GH VV LLL ++ H+ K G T L+EA + GH +V LL++ +V
Sbjct: 298 VNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADS-FESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIEL----GCSTPLMEASQEGHLELVKYLLASGANVHATTAT-GDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNV 694 HSP 4 Score: 265.388 bits (677), Expect = 6.044e-71 Identity = 189/562 (33.63%), Postives = 288/562 (51.25%), Query Frame = 2
Query: 581 ALMFACLAGHRDVAEKLLDASSEINVESESNKDSPLTFACWKGHYDVVELLLQRSANIEHRTKEG-FSPLMFAALGGHSKVAHKLLQTDAQVNVPSGSNNDIPLTSACWKGHHNVVKLLLDYESNIEHRTKDGCTPLMLAAREGHIYVADLLLKNNAQVNVPSGSENNIPLTLACWKGHWDVVRLLLDHNSDIEHRNKAGCTPLMLASREGHYETTALLLEKGAQVNVPSGSNDDTPLTLACWKGHKNVVLLLLDAKSNIDHQTKTGCTPLMEATREGHKDVAEILLNHNADVELPDNYGQ-SPLFMACWKGHRNVADLLLNRNAYRDCRTKTGITPLFQACRENHISIVELLLEYGAGVNTPFPNSRENPLTLCAEKGHQELVGLLLMKGATLDCQTKKGCTPIFLSCKEGHLEISKVLLNQGANLET-------------------------------PDCR---GNTPIMAAFKNGHVNLVEWLI---NLVHHLPSDELC-----------------HKILMSIVDDKEKEVVVQQRSKCLAIIQEMKKKRELLALKNA 2098
+L AC G + KLLD +N +E +S L AC G+Y++ ++LL AN+E R +G +PLM A+ GG+ + LL DA VN S + N LT AC G ++VK+LL+ +NIE ++G TPLM AA GH+ VA +LL + A +N S LTLAC+KGH D+VR LL+ +D EH+ T LM A +GH E LLL+ GAQVN+P+ S + +PLTLA GH + LL++ +N++ G TPLMEA REGH+++ +LL A++ Q + L +AC G VAD L+ A + T PL +A +E H+ +V+ LL GA V+ + + LT E GH ++ +LL GA L+ +++ G TP+ + + GHL + L+++GAN+ P R G+T ++ A K GH N+V +L+ N V +P+ ++ H + M +V +E + Q+ S L +Q+ K++ +L+ A
Sbjct: 208 SLAEACSDGDVNAVRKLLDEGRSVNEHTEEG-ESLLCLACSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSATGNTA-LTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFE-SPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCST---PLMEASQEGHLELVKYLLASGANVHATT-ATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTDVSQLPPPSQDQSQVPRVPTHTLAM-VVPPQEPDRTSQENSPALLGVQKGTSKQKSSSLQVA 761 HSP 5 Score: 234.187 bits (596), Expect = 2.049e-61 Identity = 173/529 (32.70%), Postives = 254/529 (48.02%), Query Frame = 2
Query: 449 IDAPTETTLDSALTWACTLGNTCIVDALLVKNADVEHR-TKDGCTALMFACLAGHRDVAEKLLDASSEINVESESNKDSPLTFACWKGHYDVVELLLQRSANIEHRTKEGFSPLMFAALGGHSKVAHKLLQTDAQVNVPSGSNNDIPLTSACWKGHHNVVKLLLDYESNIEHRTKDG-CTPLMLAAREGHIYVADLLLKNNAQVNVPSGSENNIPLTLACWKGHWDVVRLLLDHNSDIEHRNKAGCTPLMLASREGHYETTALLLEKGAQVNVPSGSNDDTPLTLACWKGHKNVVLLLLDAKSNIDHQTKTGCTPLMEATREGHKDVAEILLNHNADVELPDNYGQSPLFMACWKGHRNVADLLLNRNAYRDCRTKTGITPLFQACRENHISIVELLLEYGAGVNTPFPNSRENPLTL------------------------------CAEKGHQELVGLLLMKGATLDCQTKKGCTPIFLSCKEGHLEISKVLLNQGANLETPDCRGNTPIMAAFKNGHVNLVEWLIN 1939
+D T+ L+ AL A +G D + +V R T AL A A R AE +A V++ S L AC G + V LL ++ T+EG S L A C G++ + ++LL +N+E R G TPLM A+ G++ + LLL ++A VN S + N LT AC G D+V++LL+ ++IE N+ G TPLM A+ GH E +LL+ GA +N S ++ LTLAC+KGH ++V LL+A ++ +H+T T LMEA +GH +VA +LL+ A V +P + +SPL +A GH +A LL+ R A + G TPL +A RE H +V LLL GA +N ++E LTL +++GH ELV LL GA + T G T + +C+ GH +++ VLL GA+LE G TP+M A + GH+ V++LI+
Sbjct: 138 VDPETQARLE-ALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMKAENSHNAG---QVDTRS-----LAEACSDGDVNAVRKLLDEGRSVNEHTEEGESLLCLA----------------------------------CSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSAT-GNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEASQEGHLELVKYLLASGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLIS 622 HSP 6 Score: 231.491 bits (589), Expect = 1.517e-60 Identity = 133/384 (34.64%), Postives = 212/384 (55.21%), Query Frame = 2
Query: 1070 SENNIPLTLACWKGHWDVVRLLLDHNSDIEHRNKAGCTPLMLASREGHYETTALLLEKGAQVNVPSGSNDDTPLTLACWKGHKNVVLLLLDAKSNIDHQTKTGCTPLMEATREGHKDVAEILLNHNADV--ELPDNYGQSPLFMA----------------------------------CWKGHRNVADLLLNRNAYRDCRTKTGITPLFQACRENHISIVELLLEYGAGVNTP-FPNSRENPLTLCAEKGHQELVGLLLMKGATLDCQTKKGCTPIFLSCKEGHLEISKVLLNQGANLETPDCRGNTPIMAAFKNGHVNLVEWLINLVHHLPSDELCHKILMSIVDDKEKEVVVQQRSKCLAIIQEMKKKRELLALKNAQNLV 2110
S ++ LTLAC GH ++V +L+ ++ IEHR+K G TPL+LA+ GH +LL+KG + S DTPL+LAC G + VV LLL +N +H+ + TPL A G+ ++ +ILLN A++ G SPL +A C++G V LLL+R A + R KTG+TPL +A + + +LL+ GA VN P P+SR+ LT+ A+KGH + LL+ +GA +D + KKG TP++L+ GH ++ ++L+ GA+++ D R TP+M+AF+ GHV +V++L+ V+ PSD C + + +I D + ++++ +C+ I + K ++ A KNA L+
Sbjct: 1053 SNHDTALTLACAGGHEELVSVLIARDAKIEHRDKKGFTPLILAATAGHVGVVEILLDKGGDIEAQSERTKDTPLSLACSGGRQEVVDLLLARGANKEHRNVSDYTPLSLAASGGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHVPAVKLLLDMGSDINAQIETNRNTALTLACFQGRAEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLIHRGAHIDVRNKKGNTPLWLASNGGHFDVVQLLVQAGADVDAADNRKITPLMSAFRKGHVKVVQYLVKEVNQFPSDIECMRYIATITDKE----LLKKCHQCVETIVKAKDQQAAEANKNASILL 1432 HSP 7 Score: 223.402 bits (568), Expect = 4.575e-58 Identity = 140/356 (39.33%), Postives = 185/356 (51.97%), Query Frame = 2
Query: 389 EACSQGHVTVANYLLEN---GSKIDAPTETTLDSALTWACTLGNTCIVDALLVKNADVEHRTKDGCTALMFACLAGHRDVAEKLLDASSEINVESESNKDSPLTFACWKGHYDVVELLLQRSANIEHR-----------------------------------TKEGFSPLMFAALGGHSKVAHKLLQTDAQVNVPSGSNNDIPLTSACWKGHHNVVKLLLDYESNIEHRTKDGCTPLMLAAREGHIYVADLLLKNNAQVNVPS-GSENNIPLTLACWKGHWDVVRLLLDHNSDIEHRNKAGCTPLMLASREGHYETTALLLEKGAQVNVPSGSNDDTPLTLACWKGHKNVVLLLL 1339
E+CSQ VA+ + IDA TE+ D+ALT AC G+ +V L+ ++A +EHR K G T L+ A AGH V E LLD +I +SE KD+PL+ AC G +VV+LLL R AN EHR +K G SPLM AA+ GH LL + +N +N + LT AC++G VV LLLD ++N+EHR K G TPLM AA G+ V +LL A VN P S + LT+A KGH+ LL+ + I+ RNK G TPL LAS GH++ LL++ GA V+ + + TPL A KGH VV L+
Sbjct: 1024 ESCSQTTSNVASQSMPPVYPSVDIDAHTESNHDTALTLACAGGHEELVSVLIARDAKIEHRDKKGFTPLILAATAGHVGVVEILLDKGGDIEAQSERTKDTPLSLACSGGRQEVVDLLLARGANKEHRNVSDYTPLSLAASGGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHVPAVKLLLDMGSDINAQIETNRNTALTLACFQGRAEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLIHRGAHIDVRNKKGNTPLWLASNGGHFDVVQLLVQAGADVDA-ADNRKITPLMSAFRKGHVKVVQYLV 1378 HSP 8 Score: 203.371 bits (516), Expect = 5.237e-52 Identity = 127/335 (37.91%), Postives = 178/335 (53.13%), Query Frame = 2
Query: 275 DEMLSLACRQGKLDIVQLLLQSGAHVNHRNKAGNTPLLEACSQGHVTVANYLLENGSKIDAPTETTLDSALTWACTLGNTCIVDALLVKNADVEHR-----------------------------------TKDGCTALMFACLAGHRDVAEKLLDASSEINVESESNKDSPLTFACWKGHYDVVELLLQRSANIEHRTKEGFSPLMFAALGGHSKVAHKLLQTDAQVNVPS-GSNNDIPLTSACWKGHHNVVKLLLDYESNIEHRTKDGCTPLMLAAREGHIYVADLLLKNNAQVNVPSGSENNIPLTLACWKGHWDVVRLLL----DHNSDIE 1159
D L+LAC G ++V +L+ A + HR+K G TPL+ A + GHV V LL+ G I+A +E T D+ L+ AC+ G +VD LL + A+ EHR +K G + LM A + GH + LLD S+IN + E+N+++ LT AC++G +VV LLL R AN+EHR K G +PLM AA GG+++V LL A VN P S+ D LT A KGH+ +LL+ ++I+ R K G TPL LA+ GH V LL++ A V+ + + PL A KGH VV+ L+ SDIE
Sbjct: 1056 DTALTLACAGGHEELVSVLIARDAKIEHRDKKGFTPLILAATAGHVGVVEILLDKGGDIEAQSERTKDTPLSLACSGGRQEVVDLLLARGANKEHRNVSDYTPLSLAASGGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHVPAVKLLLDMGSDINAQIETNRNTALTLACFQGRAEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLIHRGAHIDVRNKKGNTPLWLASNGGHFDVVQLLVQAGADVDA-ADNRKITPLMSAFRKGHVKVVQYLVKEVNQFPSDIE 1389 The following BLAST results are available for this feature:
BLAST of TCONS_00050060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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