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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049918 ID=TCONS_00049918|Name=TCONS_00049918|organism=Clytia hemisphaerica|type=transcript|length=1178bp
CTTTCCAGGCATATTATATTAGAAACTCAATCTAAATTTCTAAAACAGCG
CTAGTTCAAAGTGGTCAGAAAAGTCCCTGGAAGAGAAGATAGGATCAGAA
AATGAGAGAAAAGAAGAGAATCTATACTATCagtatattttgtttttaaa
gtttgtatcgaattttttctacttttcagCTTATCGAATTAACACAACGA
AGTCAACCACCGCCAGATTTATTGACTCTACAAGATGGATTTCTTCTGCG
TCcggatgaaatcaaagaaaagtttACTGGAAAGAGAATACACAACCGCA
GGTGGAAGAAACGTTTACTTTTACCGAAGGAATTGAACGAAGAGGAATTC
AAATCACAATGTCGTGTAGAAGCATCGAAAATCTTGTTACAGGACGAAGA
AGCGATCAACAAATTATATGGTGAATTAGCCGATCGTTATCGTGGTCGTT
ATGGTGGATTTGTCAATATCACGCCTCTACCgaatcaaaaaaataaacac
tttCCATGGCTCGCCTACGTTGAATATCAAGAAAATGATTTACCACCTCT
ACCTGTGTTCCCAGAGTATGCGGATGGTTTGCTGAAAGGACGACCAAGGT
TATACACTGAAGAGGAATTAAGACTTTATGATAAGATTCAGCACCCTGAT
AGTCCATAATTTCTTTTGTGTGTATCTGAAGATGGTTAAGCTGGGTGTCT
ACTGGTGAAAATAAGTTCGTCGCgagtaaaaaatgaaaacgttttcattc
tccatcatttattattttttcttattgcGCAAAATTAAAGAACGATAGAA
TTTTAATTCCAGATATGTatctggatttattttttgcgaCAAACAAATTC
GCGACGAACTTATTTTTTTCAGTGGACGCCCAGCTTTATAGTGTGAATTT
CTAAAAACAGTTCTCAAGATCATTAGacttttctattatttttttgttag
ataaatcacgaaaaaaaatttaaaattaatccAAATGTATTTTTGATAAC
ATTCCATAATGGAGCATAAACCATGGAGCACGGAATTCATCAAACAATTT
AACATAGCTGCTACATGCAATGATAACCTCTTAGGGTAATACTTTAAGGG
AACAagtttggcgaatttggcgagtGAAAACACCTACCTATATTTAGTTC
TCACCATTAAAAAGATGCTACTTCGCAC Run BLAST on NCBI transcript from alignment at scaffold_167:879694..882203+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049918 ID=TCONS_00049918|Name=TCONS_00049918|organism=Clytia hemisphaerica|type=transcript|length=2510bp|location=Sequence derived from alignment at scaffold_167:879694..882203+ (Clytia hemisphaerica)
CTTTCCAGGCATATTATATTAGAAACTCAATCTAAATTTCTAAAACAGCG
CTAGTTCAAAGTGGTCAGAAAAGTCCCTGGAAGAGAAGATAGGATCAGAA
AATGAGAGAAAAGAAGAGAATCTATACTATCagtatattttgtttttaaa
gtttgtatcgaattttttctacttttcagCTTATCGAATTAACACAACGA
AGTCAACCACCGCCAGATTTATTGACTCTACAAGATGGATTTCTTCTGCG
TCcggatgaaatcaaagaaaagtttACTGGAAAGAGAATACACAACCGCA
GGTGGAAGAAACGTTTACTTTTACCGAAGGAATTGAACGAAGAGGAATTC
AAATCACAATGTCGTGTAGAAGCATCGAAAATCTTGTTACAGGTAACAAT
AAGCAGTCTttatacacctttcccgtaattcaaagaAACTTCTCAGAAAT
AGTCTGGGAAAGTGTGTaatccaccgttgtgtataaaattatTTGGGGGT
AAACGAACGCATTTTTCCTGCGAGGAGTTAGGATTTTCAGCTTCTAACGT
TTGATTGCGAtcttttttttggcaaaaacggttttttcgaaaGCAGCCTT
TTTTAGTGTGTTTTTAGGTTTTAGCTAGAAATGTTGATGTGTTCTTTTTG
CCCCACATCTATATAGGgatataatcaaaaaaaaattgatgtccTTTTAT
ATTTCCTAGTGATCCTAGAAAACTTCAAACAATTGAGGATGATGAAACGC
GGTGTTTTGGAAGACAAGAatgaatatttctaaaaaattgcttAGCCGGC
TACTTGCTTAGCCAACTACtgtttttttcttccttcttttaGATACAGct
ttttgctaaaatttattaaaaatccTTACCTTGTACAAGAAGAATTAGGC
ATTATAGGCTGCTGACGAGCTTAAAGCCGCGAAAGGTCTAggctagagat
gaatcttcaacctttctcaagccaaaaaaaatttaagccttaagatttgc
gccGCAATTAGCATGACTGATTAAATCTAGCACTCTCTTTGTTTTCACgc
ggcatatttttcgaaatccggcaatatgttttactttcaatccagcgttt
gtgtgaaaaccacgtaAATCACGCGTTTAGGATAAGAAagaagtggcttc
atttcctcgtgtctagccctttgggcttggaagtcaatggcaTACACCCA
CTTAAGGGTTTGTGCTCTATGTACTACCTTTTACTACCTGCGgctttgta
gaggtctgcgattcagactactttaggcgtacaaactttcgtgaGCAGAA
GCTTTCAcgatttttgtgaattttggcccttttcgcgaaagtaaatgtct
ttagaaattctaggaagggccatttgcgaaagtttatgctcgagaaagat
tcttgacaaaatagaaaatctccaaaactccaaactttgaataaaatgta
acttttatggcactttttagcctgctaaaagactaataagtcaaaggaca
aatgtttcaagccaatccaagaagtacttgtccctctaagccattttctg
atgtgaaaattctcaattttatgtcttgattcgcgaaagtttatgctcgc
gaaaaatatttttccgttaaattcgcgaaagtaaatgtcgtgaatttcga
aatttttcgtcctcgcgaaagtttgtacgccttaaGTAGACGACTATTCA
ATcggttttgataattttctttaGGACGAAGAAGCGATCAACAAATTATA
TGGTGAATTAGCCGATCGTTATCGTGGTCGTTATGGTGGATTTGTCAATA
TCACGCCTCTACCgaatcaaaaaaataaacactttCCATGGCTCGCCTAC
GTTGAATATCAAGAAAATGATTTACCACCTCTACCTGTGTTCCCAGAGTA
TGCGGATGGTTTGCTGAAAGGACGACCAAGGTTATACACTGAAGAGGAAT
TAAGACTTTATGATAAGATTCAGCACCCTGATAGTCCATAATTTCTTTTG
TGTGTATCTGAAGATGGTTAAGCTGGGTGTCTACTGGTGAAAATAAGTTC
GTCGCgagtaaaaaatgaaaacgttttcattctccatcatttattatttt
ttcttattgcGCAAAATTAAAGAACGATAGAATTTTAATTCCAGATATGT
atctggatttattttttgcgaCAAACAAATTCGCGACGAACTTATTTTTT
TCAGTGGACGCCCAGCTTTATAGTGTGAATTTCTAAAAACAGTTCTCAAG
ATCATTAGacttttctattatttttttgttagataaatcacgaaaaaaaa
tttaaaattaatccAAATGTATTTTTGATAACATTCCATAATGGAGCATA
AACCATGGAGCACGGAATTCATCAAACAATTTAACATAGCTGCTACATGC
AATGATAACCTCTTAGGGTAATACTTTAAGGGAACAagtttggcgaattt
ggcgagtGAAAACACCTACCTATATTTAGTTCTCACCATTAAAAAGATGC
TACTTCGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049918-exon-scaffold_167-1491911889:879694..880085 | TCONS_00049918-exon-scaffold_167-1491911889:879694..880085 | Clytia hemisphaerica | exon |
| TCONS_00049918-exon-scaffold_167-1510915933:879694..880085 | TCONS_00049918-exon-scaffold_167-1510915933:879694..880085 | Clytia hemisphaerica | exon |
| TCONS_00049918-exon-scaffold_167-1575043694:879694..880085 | TCONS_00049918-exon-scaffold_167-1575043694:879694..880085 | Clytia hemisphaerica | exon |
| TCONS_00049918-exon-scaffold_167-1491911889:881418..882203 | TCONS_00049918-exon-scaffold_167-1491911889:881418..882203 | Clytia hemisphaerica | exon |
| TCONS_00049918-exon-scaffold_167-1510915933:881418..882203 | TCONS_00049918-exon-scaffold_167-1510915933:881418..882203 | Clytia hemisphaerica | exon |
| TCONS_00049918-exon-scaffold_167-1575043694:881418..882203 | TCONS_00049918-exon-scaffold_167-1575043694:881418..882203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:879694..882203 + |
Blast
The following BLAST results are available for this feature:
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