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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053418 ID=TCONS_00053418|Name=TCONS_00053418|organism=Clytia hemisphaerica|type=transcript|length=3031bp
GAAAAATTTCATCATCGAAAAAATTATCCTTTAGTATAATAGACTACTGG
AACCTTGAAATTATAAATCAACACTTCCAATAAAATACACGCGATAAAAA
GTCTTTAAAAGTTTCAGAAATGTGGCTATAACAAAATATCAAAATAACTA
AATTAAAAAATGGCTGTGTTAAATCTACTTCTAACTAAATAATATATATA
CCATATATGTTGGTGAAAATAACGTGGCTTACTCTGAAATAAATATAATA
ACGCTGAAAGGTTTTATTTTGAAAAATAGCATCATTGTACTTATTTTAGC
TCAAAATCAATATTTAGCAAACCCGTGTGGACCGGATTTTGGCTAAAGTG
CCTAGAAATAGAGGACATGCTATTGTCCTAAAAGGGCTTTTCATGGTTAC
CATTCAATTTATCTAGAACACAGGCTATTTCTAAGCATAGTGTCTATAAA
AATCAGGTTAAAAATCGAACAATTTGTGAGTACCTTAAAAGTGAAAAAAA
CTTAAGTACAATAAACATCATATACATGTAAAGTCTGTTTCCAATGTATT
GGCAGTCCGCACATTTTGGTTCATTGCTCTTGAAAGAAAGTAATACCTTG
TTGAAAAGAAAATTCTGAGTAGAAGAATTTAAAGCTTTAACATTTTTCAA
AGGATTTGTAAATGAAGATGAAAAATGAAGAGAAAAAAATGAAGATTTTT
TCTACTGTCAAAATATTTTAATTTATGTTTTTCTGAAGCTTTGAACTTTG
CTGATTTCAAATATGTATTCAGATTTTTCATATTTTTCTTTCATCAAAAG
TTACAGCCCTCCAAAATAGGCTAAAAATGGCATAAAAAGGACAAAAACAG
GCAAATTGGACCCACTTTggagggctgtaacttttgatagaagaaAGACG
TGAAAAATCTGAAGTCAGCGGAGTTCaaagctttagaaaaatatagatAN
CTCCAAAATAGGCTAAAAATGGCATAAAAAGGACAAAAACAGGCAAATTG
GACCCACTTTggagggctgtaacttttgatagaagaaAGACGTGAAAAAT
CTGAAGTCAGCGAAGTTCaaagctttagaaaaatatagattcaaatattt
tggcccagtagaaaaaatcttcatttttttcctcttcattttcgaattct
ttgaaaaatttgaaagctTTAAGTTATTctactcaaaattatctttttaa
cgaggtattacttttgaTTATATCGTTTTTCCTTCAAGAGCAATGAACCA
AAATGTGTGGACTGCCAATAGTTTTGAAACAGACTTTAGTTAATCTACAT
GAATATCAAATAAACCTATGTGcttaaaaatgtcttttttcgtaaaaatg
tcttttttttcgtaaaaatatacaaataaacctacaatgcttaaaaatgt
cttttttcgtaaatatcttttttccttaaaaaaaaaacaaaaaaaaattg
aactttaaaaacaaaaatgaataaaaattgtCCTTTCCAAAGTTGCAAAG
TCAAACATAACAAAattaccaacaaaatttttcttacaggaaaaagaata
tttttgagcCAATATCTTAGGGATTTTCGTAACGTACCCAGatgtctttt
tctttcaaaacaccACGAAATAAACCATCTAAGTCCTCTTGATTTTCAAT
ATATCGCGAAACTTCTAACGTAGGCCCACATGTGTGAGGAAGTGGTACCA
TAAGCTCTCGATAGATTGCACCATTAAACTCAACGTAAACCTTTGCCAGT
CGCTCACATCCAGTAACAAAGCGTAAGAAATTGCAGCATTCATCCGTTGG
TAGCTGCTTAAGAAACTCTTTGACGAATTCAAAGACTTTCTCCTCGTGAC
GTTTTAACAAAGTGTATTTTGGTTCGAGAAGATCAGCAACCTCAACACCA
GTAGGTTTCATTTTCTGCATAAGAGTAATAAATAGATCCTCGGTAATACC
ATTTAGCGGCATCGAGTTGGTTTCTTTAATACCTTCTTTCATGTAATTTA
AAAGGCATGCTGGTAAAGCAAACGTTACATGAAAAATTAATCGGTTGGTG
AGTTCTTTAATTGAGTGTGGACTTGGTATCCCATTCATGCTGAACTTCAC
AAATAACTCTTGCAGCGAATTTTTCAAACTGACATCGTACTCGGATTATT
CAGATGCTCTCTGCAAGACTTTGCAATCTTCTCTGTTTAAACACTTCAAG
AATTCTCTCTTTGTGAGATCGTTAGATGGCTCGTTACCCGTTAAAATCTG
AAATAGTACTGCGTTGTTGATAAATGGTGGTATGTAATTAGCAATCATAT
AACCAGAAGCTAATATTTGACCTAAATTCTTCATCAATATTGGTGATAGG
GAGTGTGACGGGTTGGTTAGCAAATAGTTATCATAACCAATACCATATTT
TTCACAAAGGCATtccaaaagtcagaaaaaagaCTTCTCGATAAACCATC
TAGATCCTCTCCTCTCTCGCCTTCAAGTCTGACATATATATTACTATTTG
AGAAGTTGAATTGTGTCATGGTATCATCAACTAAATTGGTTCTCCTGATC
AAGAGTTCTTGTCTTTGGGTGAACTTTTCCAAGGTGTCACTTCTcatttt
ctctaagaaagttaaaTCGGATGGTATGTCTAGTTGGTTGTTAAATATTG
AGGCATCTTCTGAAACAACTTCGACGGTATCATTATCTTTAACAAACGTT
TTCAAATGCAATGGGATGTTTCGTCTAATGTAATACTCGTTATCAAGACT
GTTCACTAAATGGTAGTTTTTCCCAATTAGATTGGGAAATAATTGTTCAA
CTTTTAAGTAGAGAACCTCTGGTGATTGAGAGCGTCTTACTTTTAATTGG
GCTTTGTTGACACCATACGTTATATTTAAATTTATGGTGAAAACTATGTC
GGATGCTCTAATTGGCTGAGATCTAGAAATCGAGGATCCACCAGGAAGAG
TTGTCGCTGACAGTAATGGAGCACCTGTACAATATGATAGACTGCTGGTT
GATCTGTTTAACGTTGCTGGCTGGTGGCTGG Run BLAST on NCBI protein sequence of TCONS_00053418-protein >TCONS_00053418-protein ID=TCONS_00053418-protein|Name=TCONS_00053418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
SHQPATLNRSTSSLSYCTGAPLLSATTLPGGSSISRSQPIRASDIVFTIN
LNITYGVNKAQLKVRRSQSPEVLYLKVEQLFPNLIGKNYHLVNSLDNEYY
IRRNIPLHLKTFVKDNDTVEVVSEDASIFNNQLDIPSDLTFLEKMRSDTL
EKFTQRQELLIRRTNLVDDTMTQFNFSNSNIYVRLEGERGEDLDGLSRSL
FSDFWNAFVKNMVLVMITIC Run BLAST on NCBI transcript from alignment at scaffold_230:34548..37578 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053418 ID=TCONS_00053418|Name=TCONS_00053418|organism=Clytia hemisphaerica|type=transcript|length=3031bp|location=Sequence derived from alignment at scaffold_230:34548..37578 (Clytia hemisphaerica)
CCAGCCACCAGCCAGCAACGTTAAACAGATCAACCAGCAGTCTATCATAT
TGTACAGGTGCTCCATTACTGTCAGCGACAACTCTTCCTGGTGGATCCTC
GATTTCTAGATCTCAGCCAATTAGAGCATCCGACATAGTTTTCACCATAA
ATTTAAATATAACGTATGGTGTCAACAAAGCCCAATTAAAAGTAAGACGC
TCTCAATCACCAGAGGTTCTCTACTTAAAAGTTGAACAATTATTTCCCAA
TCTAATTGGGAAAAACTACCATTTAGTGAACAGTCTTGATAACGAGTATT
ACATTAGACGAAACATCCCATTGCATTTGAAAACGTTTGTTAAAGATAAT
GATACCGTCGAAGTTGTTTCAGAAGATGCCTCAATATTTAACAACCAACT
AGACATACCATCCGAtttaactttcttagagaaaatgAGAAGTGACACCT
TGGAAAAGTTCACCCAAAGACAAGAACTCTTGATCAGGAGAACCAATTTA
GTTGATGATACCATGACACAATTCAACTTCTCAAATAGTAATATATATGT
CAGACTTGAAGGCGAGAGAGGAGAGGATCTAGATGGTTTATCGAGAAGtc
ttttttctgacttttggaATGCCTTTGTGAAAAATATGGTATTGGTTATG
ATAACTATTTGCTAACCAACCCGTCACACTCCCTATCACCAATATTGATG
AAGAATTTAGGTCAAATATTAGCTTCTGGTTATATGATTGCTAATTACAT
ACCACCATTTATCAACAACGCAGTACTATTTCAGATTTTAACGGGTAACG
AGCCATCTAACGATCTCACAAAGAGAGAATTCTTGAAGTGTTTAAACAGA
GAAGATTGCAAAGTCTTGCAGAGAGCATCTGAATAATCCGAGTACGATGT
CAGTTTGAAAAATTCGCTGCAAGAGTTATTTGTGAAGTTCAGCATGAATG
GGATACCAAGTCCACACTCAATTAAAGAACTCACCAACCGATTAATTTTT
CATGTAACGTTTGCTTTACCAGCATGCCTTTTAAATTACATGAAAGAAGG
TATTAAAGAAACCAACTCGATGCCGCTAAATGGTATTACCGAGGATCTAT
TTATTACTCTTATGCAGAAAATGAAACCTACTGGTGTTGAGGTTGCTGAT
CTTCTCGAACCAAAATACACTTTGTTAAAACGTCACGAGGAGAAAGTCTT
TGAATTCGTCAAAGAGTTTCTTAAGCAGCTACCAACGGATGAATGCTGCA
ATTTCTTACGCTTTGTTACTGGATGTGAGCGACTGGCAAAGGTTTACGTT
GAGTTTAATGGTGCAATCTATCGAGAGCTTATGGTACCACTTCCTCACAC
ATGTGGGCCTACGTTAGAAGTTTCGCGATATATTGAAAATCAAGAGGACT
TAGATGGTTTATTTCGTggtgttttgaaagaaaaagacatCTGGGTACGT
TACGAAAATCCCTAAGATATTGgctcaaaaatattctttttcctgtaaga
aaaattttgttggtaatTTTGTTATGTTTGACTTTGCAACTTTGGAAAGG
acaatttttattcatttttgtttttaaagttcaatttttttttgtttttt
ttttaaggaaaaaagatatttacgaaaaaagacatttttaagcattgtag
gtttatttgtatatttttacgaaaaaaaagacatttttacgaaaaaagac
atttttaagCACATAGGTTTATTTGATATTCATGTAGATTAACTAAAGTC
TGTTTCAAAACTATTGGCAGTCCACACATTTTGGTTCATTGCTCTTGAAG
GAAAAACGATATAAtcaaaagtaatacctcgttaaaaagataattttgag
tagAATAACTTAAagctttcaaatttttcaaagaattcgaaaatgaagag
gaaaaaaatgaagattttttctactgggccaaaatatttgaatctatatt
tttctaaagctttGAACTTCGCTGACTTCAGATTTTTCACGTCTttcttc
tatcaaaagttacagccctccAAAGTGGGTCCAATTTGCCTGTTTTTGTC
CTTTTTATGCCATTTTTAGCCTATTTTGGAGNTatctatatttttctaaa
gctttGAACTCCGCTGACTTCAGATTTTTCACGTCTttcttctatcaaaa
gttacagccctccAAAGTGGGTCCAATTTGCCTGTTTTTGTCCTTTTTAT
GCCATTTTTAGCCTATTTTGGAGGGCTGTAACTTTTGATGAAAGAAAAAT
ATGAAAAATCTGAATACATATTTGAAATCAGCAAAGTTCAAAGCTTCAGA
AAAACATAAATTAAAATATTTTGACAGTAGAAAAAATCTTCATTTTTTTC
TCTTCATTTTTCATCTTCATTTACAAATCCTTTGAAAAATGTTAAAGCTT
TAAATTCTTCTACTCAGAATTTTCTTTTCAACAAGGTATTACTTTCTTTC
AAGAGCAATGAACCAAAATGTGCGGACTGCCAATACATTGGAAACAGACT
TTACATGTATATGATGTTTATTGTACTTAAGTTTTTTTCACTTTTAAGGT
ACTCACAAATTGTTCGATTTTTAACCTGATTTTTATAGACACTATGCTTA
GAAATAGCCTGTGTTCTAGATAAATTGAATGGTAACCATGAAAAGCCCTT
TTAGGACAATAGCATGTCCTCTATTTCTAGGCACTTTAGCCAAAATCCGG
TCCACACGGGTTTGCTAAATATTGATTTTGAGCTAAAATAAGTACAATGA
TGCTATTTTTCAAAATAAAACCTTTCAGCGTTATTATATTTATTTCAGAG
TAAGCCACGTTATTTTCACCAACATATATGGTATATATATTATTTAGTTA
GAAGTAGATTTAACACAGCCATTTTTTAATTTAGTTATTTTGATATTTTG
TTATAGCCACATTTCTGAAACTTTTAAAGACTTTTTATCGCGTGTATTTT
ATTGGAAGTGTTGATTTATAATTTCAAGGTTCCAGTAGTCTATTATACTA
AAGGATAATTTTTTCGATGATGAAATTTTTC Coding sequence (CDS) from alignment at scaffold_230:34548..37578 >TCONS_00053418 ID=TCONS_00053418|Name=TCONS_00053418|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_230:34548..37578 (Clytia hemisphaerica)
AGCCACCAGCCAGCAACGTTAAACAGATCAACCAGCAGTCTATCATATTG
TACAGGTGCTCCATTACTGTCAGCGACAACTCTTCCTGGTGGATCCTCGA
TTTCTAGATCTCAGCCAATTAGAGCATCCGACATAGTTTTCACCATAAAT
TTAAATATAACGTATGGTGTCAACAAAGCCCAATTAAAAGTAAGACGCTC
TCAATCACCAGAGGTTCTCTACTTAAAAGTTGAACAATTATTTCCCAATC
TAATTGGGAAAAACTACCATTTAGTGAACAGTCTTGATAACGAGTATTAC
ATTAGACGAAACATCCCATTGCATTTGAAAACGTTTGTTAAAGATAATGA
TACCGTCGAAGTTGTTTCAGAAGATGCCTCAATATTTAACAACCAACTAG
ACATACCATCCGAtttaactttcttagagaaaatgAGAAGTGACACCTTG
GAAAAGTTCACCCAAAGACAAGAACTCTTGATCAGGAGAACCAATTTAGT
TGATGATACCATGACACAATTCAACTTCTCAAATAGTAATATATATGTCA
GACTTGAAGGCGAGAGAGGAGAGGATCTAGATGGTTTATCGAGAAGtctt
ttttctgacttttggaATGCCTTTGTGAAAAATATGGTATTGGTTATGAT
AACTATTTGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053418-exon-scaffold_230-1491911889:34548..37578 | TCONS_00053418-exon-scaffold_230-1491911889:34548..37578 | Clytia hemisphaerica | exon |
| TCONS_00053418-exon-scaffold_230-1510915933:34548..37578 | TCONS_00053418-exon-scaffold_230-1510915933:34548..37578 | Clytia hemisphaerica | exon |
| TCONS_00053418-exon-scaffold_230-1575043694:34548..37578 | TCONS_00053418-exon-scaffold_230-1575043694:34548..37578 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_230 | supercontig | scaffold_230:34548..37578 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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