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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049926 ID=TCONS_00049926|Name=TCONS_00049926|organism=Clytia hemisphaerica|type=transcript|length=1808bp GCTATgcttttactttcattttcattttttttatttttcagctatcaaaa attataaaagattttaaaccACAATGAGAAAAGACATTCAAAGAGCAGCT GAAGTCATCCAAAAAGCTCATGCTTTGCTTATCACTTCTGGCGCTGGTAT GGGAGTTGATTCAGGCTTGCCTGATTTTCGAGGAGATGAAGGCCTTTGGA AAGCCTATCCACCTTTAAAAAAGAGAGGGCTTTCTCTCCCCAGTATgaGT ACCCCTCACTGGTTTAAGACAGATCCAAAATTTGCATGGGGTTTCTTTGG TCACCGTATCATGTtataccaaaatacagttccacACAATGGCTTCAGGA TTCTTCAGAAATGGTGCAAGAATCGTAAAAAAGGACATTTTGTGATGACC AGTAATGTTGATAACCAATTTCAAATTTCTGGATTTGACGAAAACGAAAT TGTCGAATGCCATGGAAGTCTCTCCTATTTTCAAAACTTGGAAGGAACTG GTAGTATATGGCCCTGCCCTAAAGATTTCTCATTGGAAATAGACACTGAA ACATTTAATGCTGTTTCCCCACTACCGACTGGTCCTCCAGATGCGGATCC TGGACAACAAACACTAAGCCGACCAAACGTCTTGATGTTTAACGATCATT TCTGGGTTGATGAACGCACTGAACAACAATTCAAGCAATTTTCTGAGTGG CAATACCGTATAATGCCATCCGAATCACTTGTGGTCATCGAGATTGGCGC TGGACTCGCTGTCCCAACTATACGATACCAGAGCGAACGATCGAGTTCTA TGAATCAGAACAGTTATTTAGTACGTATTAATCCACGAGATACGGAGATA CCACGTTCAAAAGATATTAGTATACCACTGGGTGGTTTGGAAGCATTGAC TTTGATTGATGAATGCTTGAATGAAATGAATAATAATGAAACATGATACT GTTTGCTGACATTTGATGAAATAGCGCTGAAATTTGAACGATTTTCAAAC ACAGTGTTGATTTCGAAGCTTAAAAGTTGTTACTGTGAGTAACTGACATC CAAGAGCAATACACGaattgcaaaattatatcagtacagtcaaaacatgt gattactcgaaaaagtagacgtgattttattcccatgttacaaCTTACca ctgataactttattagtgtcaataaatttgaaccaatcagaaataaatgt catgtaacaagcacataaaaatttctagtaaaagcgtgatttgtcttcag actttaattttgcaacctgtgtattaaCGCAAAGAATGATGGAATTCGAA CAAACGAATAAATTTTGTGCTGATTCAGACCGATTTGTAGATTTTTAGAT TCAATGCGGTTGTAGAAAGTGTTTAATCCAGGACCCGACTTCAATGAATT GAATATTATGGTTTATAAATACGCAGAACGAGTAAAGTAAATGTGAACGT TTGCAGGTGATAAAACCTTACTATACTTTATTGAAACTAACAATgtggag aaaaatcaaaaacataacaTACTCTTGTGAGGCCTTTGCTGagaattttt ctgaattttaggCTATCTGGAAATTTTGTAGACTCTAAGTTATCATTATT GAACTTGTCTCAATTCAAAATGTGgcaatttgattgaattcgGAAGTGTA TTTTTCAATAGGAAATTTTAGAATTGTATAACATTATATACCAATTCcga ttcgaaattttttttttcgaagccGAGAGACGGATCTCCTATTAAAGCCA CTTAATCCCTACATAAGTTGCGTGGTCTGTGTGGTTTTCATAAAAACGCT GGATTGGG Run BLAST on NCBI protein sequence of TCONS_00049926-protein >TCONS_00049926-protein ID=TCONS_00049926-protein|Name=TCONS_00049926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MRKDIQRAAEVIQKAHALLITSGAGMGVDSGLPDFRGDEGLWKAYPPLKK RGLSLPSMSTPHWFKTDPKFAWGFFGHRIMLYQNTVPHNGFRILQKWCKN RKKGHFVMTSNVDNQFQISGFDENEIVECHGSLSYFQNLEGTGSIWPCPK DFSLEIDTETFNAVSPLPTGPPDADPGQQTLSRPNVLMFNDHFWVDERTE QQFKQFSEWQYRIMPSESLVVIEIGAGLAVPTIRYQSERSSSMNQNSYLV RINPRDTEIPRSKDISIPLGGLEALTLIDECLNEMNNNET Run BLAST on NCBI transcript from alignment at scaffold_167:941885..947322+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049926 ID=TCONS_00049926|Name=TCONS_00049926|organism=Clytia hemisphaerica|type=transcript|length=5438bp|location=Sequence derived from alignment at scaffold_167:941885..947322+ (Clytia hemisphaerica) GCTATgcttttactttcattttcattttttttatttttcagctatcaaaa
attataaaagattttaaaccACAATGAGAAAAGACATTCAAAGAGCAGCT
GAAGTCATCCAAAAAGCTCATGCTTTGCTTATCACTTCTGGCGCTGGTAT
GGGAGTTGATTCAGGCTTGCCTGATTTTCGAGGAGATGAAGGCCTTTGGA
AAGCCTATCCACCTTTAAAAAAGAGAGGGCTTTCTCTCCCCAGTATggta
agtttttttaaagacgATAATTAGAATAAAATGTGTTTGAGTTCAGGAGc
atttttctagaaatttttttgacagcCGTTTAATCAGTTTAGGCAGGCAA
TCATGAGGGTTATTTAACCAGTTATTAAAAGACCGTATCATTATCAGTCA
ggcagtcagggaaatccctcaattgcggtatactgcaattgcagtagttT
GCATTTGTGgttagcctacaaaggcttataacagctacatatagtgctgg
tcgacaaagataaacaaatatcGACTGTAAAAAATCGAACGAGAAGAaag
cttgtttttattaaaagaatctgatctacggaaaaaatattttgtctgtg
cgttatgatcaattatgtacaaaaattgcctgttttctccttgaatcttg
aattctgttttttgaatatactgcaattgcagtataggcggcaatcacaa
atatattcattttgtgtcctcgttgggtctaaaagtCGGTCTAaaagtcg
gtcggtcggttggtcggtcggtTTTCGAGAGTTGGTCGGGCGACgcaaaa
caaagatatttgtgattgccgccatATGAAAAATGTTAAAGTGACGTTTA
TACCCCAAGagtaaaaaattactaccacaattgagggatttccctaaCTG
ATTATTATAgcatagaccttttgctagatACAAAATGTCATGCATGTTGg
ttaattaaaaactccagcactAAAAAATCACACATAATTGCATAATCTTT
ATAAGCGTGCACTAAATTTTCTTATTGTTGTTCTAATGCTAGGGTTTTTA
ATTATCCAACATGTCATCATAGTAAGGGTATTTCCTtacaattcttttgt
ttttttttgaattgagtATTGGGTGGTTGACAGTGATGATTCTGTCTTCT
AATGGTCCTAAAAATAGTAGTTTTCATGCATGATGCATCATAACAGCCTT
GACACTAGCAGGGTTGCTAGGTCTGCCAGAAATGTCTGGAATTAAGTCTG
GGAATGTATGGAATAAGCGCACCGGTCTAGAAAAGTCTGGAATTGTCATT
TCATGTCTGAAAAAATATGGAATTTGaaggaaatagtcctgaatgaaGTC
TAGTAAACTTTCCGAGGAAACTTTTATCTTGGCATTtgaaattcgcaaaa
atttctGCTCGCAGAGGTAAAAAATCTGGAAGAACATGGCTTTTGATACT
AAAAGTCTAGAATTTTGAACTTGGCAAACCTGTAGCAACCCTGACTAGAG
ACATTCTAACTAGATTGTGAAAAATAAACCGTTCTTTGATTTTACTTTGA
AAACTATCTGATTTTTTTAACATGATGCCGCATTCTCCCTTTCCAGCTTG
GGCCAAATAGATATCCCACCCCtcaaaaataagattttatttcagtaaaa
ataaacataaattgaaaaatctttatttttgcagAGATCATCAAACtctt
tagagatttttttcaaatgaaccaTTTTTATTagtaaaagttatttttta
tttacagaGTACCCCTCACTGGTTTAAGACAGATCCAAAATTTGCATGGG
GTTTCTTTGGTCACCGTATCATGTtataccaaaatacagttccacACAAT
GGCTTCAGGATTCTTCAGAAATGGTGCAAGAATCGTAAAAAAGGACATTT
TGTGATGACCAGTAATGTTGATAACCAATTTCAAATTTCTGGATTTGACG
AAAACGAAATTGTCGAATGCCATGGAAGTCTCTCCTATTTTCAAAACTTG
GAAGGAACTGGTAGTATATGGCCCTGCCCTAAAGATTTCTCATTGGAAAT
AGACACTGAAACATTTAATGCTGTTTCCCCACTACCGACTGGTCCTCCAG
GTACGTATTACTTTAGTTAAGGAATGAAATCTTTAGCCACTGAGATATTA
AATTTATTGATAGAGAAtggatttttctcaaaaatttaaaaatacacctt
ttcgatcgtagccgccaattgccgcgcgggcattttttgtccgctttatc
ccactaaaaccgtcccagtccttttttcgcacataTAGACAATAGTTGTA
TTCgcctttctttttaaacaacCACGTCTTTTTAACCACAGGCTaaggga
ccttgaaaaccttgaatttTAACCGGAAGCCTTGAAAAAGCATGAATAAA
ATAGGGGCTTGGCTTTTAGGGAAggtcaaactgaaaatttgacacttttt
gaatggttactaGGCTGTCACTGTAAGATGAATTGGAGGTTCAGACCTCT
CTATACACTATGTAAGCATTATCTTAGCTATTAAGATCGTGTGTTTATCT
TGCTTTGGCTCGAGCTACTACTGTATTTTGGTCAGTATTTTTTCTACAAA
GTTTTTCGAGCTCGCTTTGCCCCCAATTATCTTATTTTTGTAATAAATAA
AGCTGCGAAGAATCTGACAACTGAAGTATTTAAaccattttgataaattt
gaatAAACGGCCCATTACACGGAcaagaaaaacttgaaaatcgaTTGAAT
ATTGACCTGAACCAGAACATAGAGAAAAGCAGTTGATAGTGAAACATAGT
GTCCTCCTTggttggttccccccactaaaaatccaattttttctccattc
cccACTCTTTTCTTccccccaccatatttcaaaaattttcggttcccccc
tcttttttgaatttccccagctatttgaagattttgcggttcccccatat
ggttaacataaaaatgccttaaatcaaatttgaaattttNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGAAAGtga
ggtcgtgggttcaattcccactcgattcgttacctttgagaaaactggga
agtacattagtgcaggatccgttgattcattacctgAAAGTTTATTGATT
ACCTAACATTGTTCTTTCAGATGCGGATCCTGGACAACAAACACTAAGCC
GACCAAACGTCTTGATGTTTAACGATCATTTCTGGGTTGATGAACGCACT
GAACAACAATTCAAGCAATTTTCTGAGTGGCAATACCGTATAATGCCATC
CGAATCACTTGTGGTCATCGAGATTGGCGCTGGACTCGCTGTCCCAACTA
TACGATACCAGAGCGAACGATCGAGTTCTATGAATCAGAACAGTTATTTA
GTACGTATTAATCCACGAGATACGGAGATACCACGTTCAAAAGATATTAG
TATACCACTGGGTGGTTTGGAAGCATTGACTTTGATTGATGAATGCTTGA
ATGAAATGAATAATAATGAAACATGATACTGTTTGCTGACATTTGATGAA
ATAGCGCTGAAATTTGAACGATTTTCAAACACAGTGTTGATTTCGAAGCT
TAAAAGTTGTTACTGTGAGTAACTGACATCCAAGAGCAATACACGaattg
caaaattatatcagtacagtcaaaacatgtgattactcgaaaaagtagac
gtgattttattcccatgttacaaCTTACcactgataactttattagtgtc
aataaatttgaaccaatcagaaataaatgtcatgtaacaagcacataaaa
atttctagtaaaagcgtgatttgtcttcagactttaattttgcaacctgt
gtattaaCGCAAAGAATGATGGAATTCGAACAAACGAATAAATTTTGTGC
TGATTCAGACCGATTTGTAGATTTTTAGATTCAATGCGGTTGTAGAAAGT
GTTTAATCCAGGACCCGACTTCAATGAATTGAATATTATGGTTTATAAAT
ACGCAGAACGAGTAAAGTAAATGTGAACGTTTGCAGGTGATAAAACCTTA
CTATACTTTATTGAAACTAACAATgtggagaaaaatcaaaaacataacaT
ACTCTTGTGAGGCCTTTGCTGagaatttttctgaattttaggCTATCTGG
AAATTTTGTAGACTCTAAGTTATCATTATTGAACTTGTCTCAATTCAAAA
TGTGgcaatttgattgaattcgGAAGTGTATTTTTCAATAGGAAATTTTA
GAATTGTATAACATTATATACCAATTCcgattcgaaattttttttttcga
agccGAGAGACGGATCTCCTATTAAAGCCACTTAATCCCTACATAAGTTG
CGTGGTCTGTGTGGTTTTCATAAAAACGCTGGATTGGG Coding sequence (CDS) from alignment at scaffold_167:941885..947322+ >TCONS_00049926 ID=TCONS_00049926|Name=TCONS_00049926|organism=Clytia hemisphaerica|type=CDS|length=2619bp|location=Sequence derived from alignment at scaffold_167:941885..947322+ (Clytia hemisphaerica) ATGAGAAAAGACATTCAAAGAGCAGCTGAAGTCATCCAAAAAGCTCATGC TTTGCTTATCACTTCTGGCGCTGGTATGGGAGTTGATTCAGGCTTGCCTG ATTTTCGAGGAGATGAAGGCCTTTGGAAAGCCTATCCACCTTTAAAAAAG AGAGGGCTTTCTCTCCCCAGTATgaGTACCCCTCACTGGTTTAAGACAGA TCCAAAATTTGCATGGGGTTTCTTTGGTCACCGTATCATGTtataccaaa atacagttccacACAATGGCTTCAGGATTCTTCAGAAATGGTGCAAGAAT CGTAAAAAAGGACATTTTGTGATGACCAGTAATGTTGATAACCAATTTCA AATTTCTGGATTTGACGAAAACGAAATTGTCGAATGCCATGGAAGTCTCT CCTATTTTCAAAACTTGGAAGGAACTGGTAGTATATGGCCCTGCCCTAAA GATTTCTCATTGGAAATAGACACTGAAACATTTAATGCTGTTTCCCCACT ACCGACTGGTCCTCCAGATGCGGATCCTGGACAACAAACACTAAGCCGAC CAAACGTCTTGATGTTTAACGATCATTTCTGGGTTGATGAACGCACTGAA CAACAATTCAAGCAATTTTCTGAGTGGCAATACCGTATAATGCCATCCGA ATCACTTGTGGTCATCGAGATTGGCGCTGGACTCGCTGTCCCAACTATAC GATACCAGAGCGAACGATCGAGTTCTATGAATCAGAACAGTTATTTAGTA CGTATTAATCCACGAGATACGGAGATACCACGTTCAAAAGATATTAGTAT ACCACTGGGTGGTTTGGAAGCATTGACTTTGATTGATGAATGCTTGAATG AAATGAATAATAATGAAACATGAATGAGAAAAGACATTCAAAGAGCAGCT GAAGTCATCCAAAAAGCTCATGCTTTGCTTATCACTTCTGGCGCTGGTAT GGGAGTTGATTCAGGCTTGCCTGATTTTCGAGGAGATGAAGGCCTTTGGA AAGCCTATCCACCTTTAAAAAAGAGAGGGCTTTCTCTCCCCAGTATgaGT ACCCCTCACTGGTTTAAGACAGATCCAAAATTTGCATGGGGTTTCTTTGG TCACCGTATCATGTtataccaaaatacagttccacACAATGGCTTCAGGA TTCTTCAGAAATGGTGCAAGAATCGTAAAAAAGGACATTTTGTGATGACC AGTAATGTTGATAACCAATTTCAAATTTCTGGATTTGACGAAAACGAAAT TGTCGAATGCCATGGAAGTCTCTCCTATTTTCAAAACTTGGAAGGAACTG GTAGTATATGGCCCTGCCCTAAAGATTTCTCATTGGAAATAGACACTGAA ACATTTAATGCTGTTTCCCCACTACCGACTGGTCCTCCAGATGCGGATCC TGGACAACAAACACTAAGCCGACCAAACGTCTTGATGTTTAACGATCATT TCTGGGTTGATGAACGCACTGAACAACAATTCAAGCAATTTTCTGAGTGG CAATACCGTATAATGCCATCCGAATCACTTGTGGTCATCGAGATTGGCGC TGGACTCGCTGTCCCAACTATACGATACCAGAGCGAACGATCGAGTTCTA TGAATCAGAACAGTTATTTAGTACGTATTAATCCACGAGATACGGAGATA CCACGTTCAAAAGATATTAGTATACCACTGGGTGGTTTGGAAGCATTGAC TTTGATTGATGAATGCTTGAATGAAATGAATAATAATGAAACATGAATGA GAAAAGACATTCAAAGAGCAGCTGAAGTCATCCAAAAAGCTCATGCTTTG CTTATCACTTCTGGCGCTGGTATGGGAGTTGATTCAGGCTTGCCTGATTT TCGAGGAGATGAAGGCCTTTGGAAAGCCTATCCACCTTTAAAAAAGAGAG GGCTTTCTCTCCCCAGTATgaGTACCCCTCACTGGTTTAAGACAGATCCA AAATTTGCATGGGGTTTCTTTGGTCACCGTATCATGTtataccaaaatac agttccacACAATGGCTTCAGGATTCTTCAGAAATGGTGCAAGAATCGTA AAAAAGGACATTTTGTGATGACCAGTAATGTTGATAACCAATTTCAAATT TCTGGATTTGACGAAAACGAAATTGTCGAATGCCATGGAAGTCTCTCCTA TTTTCAAAACTTGGAAGGAACTGGTAGTATATGGCCCTGCCCTAAAGATT TCTCATTGGAAATAGACACTGAAACATTTAATGCTGTTTCCCCACTACCG ACTGGTCCTCCAGATGCGGATCCTGGACAACAAACACTAAGCCGACCAAA CGTCTTGATGTTTAACGATCATTTCTGGGTTGATGAACGCACTGAACAAC AATTCAAGCAATTTTCTGAGTGGCAATACCGTATAATGCCATCCGAATCA CTTGTGGTCATCGAGATTGGCGCTGGACTCGCTGTCCCAACTATACGATA CCAGAGCGAACGATCGAGTTCTATGAATCAGAACAGTTATTTAGTACGTA TTAATCCACGAGATACGGAGATACCACGTTCAAAAGATATTAGTATACCA CTGGGTGGTTTGGAAGCATTGACTTTGATTGATGAATGCTTGAATGAAAT GAATAATAATGAAACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049926-exon-scaffold_167-1491911889:941885..942131 | TCONS_00049926-exon-scaffold_167-1491911889:941885..942131 | Clytia hemisphaerica | exon |
TCONS_00049926-exon-scaffold_167-1510915933:941885..942131 | TCONS_00049926-exon-scaffold_167-1510915933:941885..942131 | Clytia hemisphaerica | exon |
TCONS_00049926-exon-scaffold_167-1575043694:941885..942131 | TCONS_00049926-exon-scaffold_167-1575043694:941885..942131 | Clytia hemisphaerica | exon |
TCONS_00049926-exon-scaffold_167-1491911889:943642..943984 | TCONS_00049926-exon-scaffold_167-1491911889:943642..943984 | Clytia hemisphaerica | exon |
TCONS_00049926-exon-scaffold_167-1510915933:943642..943984 | TCONS_00049926-exon-scaffold_167-1510915933:943642..943984 | Clytia hemisphaerica | exon |
TCONS_00049926-exon-scaffold_167-1575043694:943642..943984 | TCONS_00049926-exon-scaffold_167-1575043694:943642..943984 | Clytia hemisphaerica | exon |
TCONS_00049926-exon-scaffold_167-1491911889:946105..947322 | TCONS_00049926-exon-scaffold_167-1491911889:946105..947322 | Clytia hemisphaerica | exon |
TCONS_00049926-exon-scaffold_167-1510915933:946105..947322 | TCONS_00049926-exon-scaffold_167-1510915933:946105..947322 | Clytia hemisphaerica | exon |
TCONS_00049926-exon-scaffold_167-1575043694:946105..947322 | TCONS_00049926-exon-scaffold_167-1575043694:946105..947322 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_167 | supercontig | scaffold_167:941885..947322 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0070403 | NAD+ binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0070403 |
NAD+ binding |
Blast
The following BLAST results are available for this feature:
|