TCONS_00050088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050088
Unique NameTCONS_00050088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050088 ID=TCONS_00050088|Name=TCONS_00050088|organism=Clytia hemisphaerica|type=transcript|length=2316bp
aaaaaaaatagtttaagAACCATGATTGTTTTTCAATGTGCTATCTTGTT
TACGATAATCTCTTCGGGACTGGGACGAGTCTTTGTAGTGGATAACACGT
CACAACAGGACAAGGCTGATGGCTCTGTTGGATCCCCTTTCAAAACAATC
CAAGATTGTGTCAACGCTCTCAAAACCATTGGAAAGCCAGGAGATGAATG
CCAGATCCGTGCTGGACAGTACCACGAAAATGTGAAGATTGACAATCTTC
AAGGTACACCAAACCAACCGTTTATGATCCGTGGATATGGAGACGAACGT
CCAAAAATTGACGGAACAATTCCCATATTTCCAGCAATCGATCCGGAGAC
AGGTGACCGTTATAATTGGAAAACCTTGAGTGAGGATTCGAAAATCTATA
AAACGAAAATCAATCAAGACATTTGGCAACTCTTTGTAAACAACCAAATG
ATGACCAATGCAAGATGGCCTAACGCTAAATGGTCAGATCGCTCAATCTT
CAAAGGTTCGTTATGGGCCAAACTTGACAACGCGTCAAAGAAAGGTTATA
TGGTGAACAAAGGACGAAGCCTGGCGCAAACGAACATAAATATGACGAAC
GCAGTAGCCGTATTGAACATTGGTAGTTTCAACACCTTTGTGGCTAAAGT
TGAAGATCATCAGGCTGGTCAGAATTGGTTTAACTACAAGGATACGTTTA
ACAATGACAAATTCAAACCATCTATCAGCAAATATTTCATTGAAGATAAA
TTAGAGCTTTTAGACACCCCAGAAGAATGGTTTTATAATCAGGAAACCAA
AACACTATATGTGTGGATGCCAAACGGAGATTCACCAAGAGATCATGAAT
TGCGTGGTAAGGTTCAAACATATGCTATGGAAATTACCAATACTCATAAC
TTGGTTCTCAAAAACCTAGATTTTTTTGCCACCGCAATCTCAGCCATCAG
CAGTCGTTCAGAAAATATTGATGGTGTGAAATTTGATTCACTCATCTTCA
ACTATCCGACCTACTCTAAACGAATGTTAGGTGATATCTCACTAATAAAA
CGTATCAGGGCCTTGGGAAGATCTAGGCGAAACTATGGAAGTTTCGTCTT
TTTCAATAACACGTTTTATGGCTCTGACGGAGCGACCCTAGATGTTAACG
GCTTTAACGTTACCTACGACAACAACCTTTGGGAATACAATGACTGGACC
GGTGCCAATATGCTCACATTCAACGGCGGAGAAGGGCCGATCAATACTTA
CGCGCGAAATGAAGTGTACTATAGAAACACATTCCGGTACAACGATGCAA
GTACATCCATTCAACCTGGTTTGAATCCTCGCATCATATTAAATCACGTG
GTTGGCACGTGTTGGGGGACCATACAAAATGATGGCGCCGGTATTCATTT
AATGAGGGGACAACAGATGAATGCTCAATTGAGATATAACTGGGTACACA
ATACTCCAAAATATGCTCTTCGTTTTGACGGTCAACCACCGCGTATTGGT
CGAAATGGAACAATGTCGCATAATGTTGCTTTTCAATCAAACGGAATCAT
GGTCAAAGGCGACAGTCATTTGGTAGAGAACAACTTGGCTTTCCAGAAAT
ACAATGAAAATGACGATGACAAACAGGGCACCGGATGTTCCCTGTGTATC
CTCAAATTCGTTCGAGCAAACCCTGGTCAAATCAACAACAACTCAGTAGT
CATCAACAATATAGCAGACAGGGCGAATGGCGGAATTAACGTATGGAAAA
GACCAAATGTCTTCCCAGTACCAGGGCGTATcgttaaaaataataaattc
aatGCGAAAATTGCTGAACAAATTATGGATCATAATAATTTCGATTTTAG
GCCAGTCAAAGGTTCTCGAGCTGCTGTCAACGGAATAGGCCCGTACCGCT
ACGAAGAACGAATGACTGAATATTGGATTCCCGGGCGTAAGTTATACAAA
ACATCCACCCCAGTCCCACAAAACGGCTCGGTTACCGTTAAAGCGGCTCG
CCGTGACGCCGTCATGTTTCTGCAAGCTTGGGACTGCCGTACGCATATTA
TTTATTTTGGATCAAACAAAAGAGCCGTTGAAAATGCTCGAGATGTCGAC
GATATCAATTACCTTGGAACTCTTGAGAATGGTTCCAACGTTTTTTATCT
CCCTAATAAATTGTCCAAATTAGCCACCTACTTTTGGCGTGTGGACGCTA
TGACAGACACAGGTATAGTTTATAAAGGAGATGTATGGAATTTTACAACA
AAAGGCGACTTGTAAATTTGTATTGCATATCTTTTTATCAGAAGAGATTT
CTGCCAATAAACTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_167:959102..964705-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050088 ID=TCONS_00050088|Name=TCONS_00050088|organism=Clytia hemisphaerica|type=transcript|length=5604bp|location=Sequence derived from alignment at scaffold_167:959102..964705- (Clytia hemisphaerica)
AAAAAAAATAGTTTAAGAACCATGATTGTTTTTCAATGTGCTATCTTGTT
TACGATAATCTCTTCGGGACTGGGACGAGTCTTTGTAGTGGATAACACGT
CACAACAGGACAAGGCTGATGGCTCTGTTGGATCCCCTTTCAAAACAATC
CAAGATTGTGTCAACGCTCTCAAAACCATTGGAAAGCCAGGTAAATTGAT
AAGATTTTTTTTTCGATCATAATTGTTTGATGAATACAGTTGAAGCATAA
TTCGACGTTCTTTTATTCGATACACTACACTCCATTATCCGATACTATTG
AAAGTCACTTTCAACAAAAAACTTTCATGTTATTATTCAATACGTTCCCT
TAAAGCTTATTGGATGCATATTGGATGAAAATCCAATTCCTTTTGATTGA
GAATGGAATTAGAGAGCGTCACCTATTGTAGTAAACATCTGCAGGCTACC
TTATCGGGGAAAACTTCGTCGGGGAAAAGTGACGAAATTTTGGACAGGTG
ACGAATGTTTTCCCCGACGAAAATTTTTCCCGACGAAGTTTTCCCCGATA
AGGTATTTAATTTTAACGCGCCATTATTTTGACAAATATTAGAATACATT
ACGATATATTTGTACTTTAGAATTATCGTCTATTGTTAACCGGTTACTTT
TTCGNAAAAAAAAATAGTTTAAGAACCATGATTGTTTTTCAATTTGCTAT
CTTGTTTACGATAATCTCTTCGGGACTGGGACGAGTCTTTGTAGTGGATA
ACACGTCACAACAGGACAAGGCTGATGGCTCTGTTGGATCACCTTTCAAA
ACAATCCAAGATTGTGTCAACGCTCTCAAAACTATTGGAAAGCCAGGTAA
ATTGATAAGACTTTTTTTTCGATCATAATTGTTTGATGGATACAGTTGAC
ATAATTCGACGTTCTTTTATTCGATACACTACACTCCATTATCCGATACA
CTATTGAAAGTCACTTTCAACAAAAAACTCTCATGTTATTATTCAATACG
TTCCCTTAAAGCTTATTGGATGCATATTGGATGAAAATCCAATTCCTTTT
GATTGAGAATCGAATTAGAGACTACTGTAGTAAACATCTGCAGGCTACCT
TATCGGGGAAAACTTCGTCGGGGAAAAGTGACGAAATTTTGGACAGGTGA
CGAATATTTTCCCCGACGAAAATTTTCCCCGGCCTTAATGCATTTACCAA
CTACCAGCAAGTGACGAATTTTTCCCCGACGAAAATTTCCCCGACGAAAA
TTTTCCCCGACGGAGTTTTCCCCGATAAAGTATTTCACTTTAACGCGCCA
TTATTTTGACAAATATTAGAATACATTACGATACATTTTGTACTTTAGAA
TTATCGTCTAGAATTGGATCAAATTTTAGAATTTTTTTCCATAAAGTTTT
GAAAAAGGCGGGAGATATGAAAAATCTTTTGCCGTCAATGAAACCAGTCA
GAACTTGTGTTCTTTATCATTGTGAACTAAATGTATAAAAACCTCTTCAA
CCAATCATCATAGAAAAGCAGAGCAGAATTCAAATATACCAACAATTTGT
ACATTATAATATTTTCAAACTAACCACTTTTGCCGTTTAAAACTCGAAAG
TACCGAGTTTATGGATGTGTGTTTTTAAGCGATGGAGACGGTAAGGTTCT
AATTTTACTACATCCTGACCAACTGAGGACGACGGTAAATCAGCACCGTC
CTCGATTTTGCAGGGCAGAACTGCGGGTTATTCCAAATCGCTTCAGTCAC
TTTACCGTCCTCAAAAGCGCAAATACATAAACTCGCTAGTGATATCGCTT
CAAACACGAGGAATATTTTTCCAACTTAGAGAACTTTTTCAAACAATCTT
AGTTGAGTAGAGTTCAAATCTCAGGTTTCAATGAATTTGATTGTTATGAA
TTGAATTTCATCCCAGGAGATGAATGCCAGATCCGTGCTGGACAGTACCA
CGAAAATGTGAAGATTGACAATCTTCAAGGTACACCAAACCAACCGTTTA
TGATCCGTGGATATGGAGACGAACGTCCAAAAATTGACGGAACAATTCCC
ATATTTCCAGCAATCGATCCGGAGACAGGTGACCGTTATAATTGGAAAAC
CTTGAGTGAGGATTCGAAAATCTATAAGTAAGTTATGTCTGGTTCCTAAT
ATATACCGAGTTGTCCATATATTTGTAGTGTAAAGATTTCGATCACAGAC
TTGCACCGCAATGAACTGTGTTCGAATCCCAATCATTTCTAGGTAAGGTG
TTAGGGGAGACTCTCTATATCTTTACTTGGTTCCTAATATTGAAAGAATT
GATGAATGTTGAATCTTTTAAAAAAGATGCTGAATGAAGCCCTAGTGGCA
CAGGGCAATATACATAAATATATACTATATTTTCAGAACGAAAATCAATC
AAGACATTTGGCAACTCTTTGTAAACAACCAAATGATGACCAATGCAAGA
TGGCCTAACGCTAAATGGTCAGATCGCTCAATCTTCAAAGGTTCGTTATG
GGCCAAACTTGACAACGCGTCAAAGAAAGGTTATATGGTGAACAAAGGAC
GAAGCCTGGCGCAAACGAACATAAATATGACGAACGCAGTAGCCGTATTG
AACATTGGTAGTTTCAACACCTTTGTGGCTAAAGTTGAAGATCATCAGGC
TGGTCAGAATTGGTTTAACTACAAGGATACGTTTAACAATGACAAATTCA
AACCATCTATCAGCAAATATTTCATTGAAGATAAATTAGAGCTTTTAGAC
ACCCCAGAAGAATGGTTTTATAATCAGGAAACCAAAACACTATATGTGTG
GATGCCAAACGGAGATTCACCAAGAGATCATGAATTGCGTGGTAAGGTTC
AAACATATGCTATGGAAATTACCAATACTCATAACTTGGTTCTCAAAAAC
CTAGATTTTTTTGCCACCGCAATCTCAGCCATCAGCAGTCGTTCAGAAAA
TATTGATGGTGTGAAATTTGATTCACTCATCTTCAACTATCCGACCTACT
CTAAACGAATGTTAGGTGATATCTCACTAATAAAACGTATCAGGGCCTTG
GGAAGATCTAGGCGAAACTATGGAAGTTTCGTCTTTTTCAATAACACGTT
TTATGGCTCTGACGGAGCGACCCTAGATGTTAACGGCTTTAACGTTACCT
ACGACAACAACCTTTGGGAATACAATGACTGGACCGGTGCCAATATGCTC
ACATTCAACGGCGGAGAAGGGCCGATCAATACTTACGCGCGAAATGAAGT
GTACTATAGAAACACATTCCGGTAAGTTTTGTTTACAGAGTAACAAGCTT
GTAGTTTTGCGAAAACCAGCATCACTGCCACCAGATTCACAATTTACTTT
ACAACTCGCACTTTTAATTAGCAACTCGCACTTTTAATTTATAACTCGCA
CTATAAATTTGCAACTCGTGCTTCTGATGTCTTATCAAACAATTTTCAAC
TCGCAACTCGCGATTTTATTTTATTTTATTTTCGATTTTAAATGCAACTC
GTAACTCGTAAAAAGTAGCACGCAACTCGCATATCTAATATCAACTCGTA
ACTCACAAGACCAACTCGCAACTTGTATAGTATCCAATTCATAGTGTAGC
CCGTAGATATCGGATAAATCAGACACGTTTTGCGGACGTTAAAAATTCAA
AAAATGATGGAAGTTTCCACCTAGAAAAGCAACTATTAATTTAAAAAGTT
CAACATATACCAACCGTTATCTCTTTCCAGGTACAACGATGCAAGTACAT
CCATTCAACCTGGTTTGAATCCTCGCATCATATTAAATCACGTGGTTGGC
ACGTGTTGGGGGACCATACAAAATGATGGCGCCGGTATTCATTTAATGAG
GGGACAACAGATGAATGCTCAATTGAGATATAACTGGGTAAGATTTTAAG
TTAAGAATCAAAGCCATCAGACGATATCATTTAGCGGCTAGTCGGCTAGA
ATCTGTGGGATATTTTATTGGACGCAACAGCGTGGGGTTAGATTGAATAT
TAGATCCATATTTCCGGTAGGAATGCCTTATATGCAGAAACTTAATTGAA
GTAAAGTTGTAACAGATTTCTTCAGTTCAATTAGCGAGGTTAAGCAAGTG
TTTATTTAGACCGTTCAATGCGATATCTGAGGCCTGTACATAAAATTTCA
CTTGCATGGTTTGCTTTGGCAAGTTATGTACAGGCCTACGGTATCGCACT
TTACGGTCAAAATAAACCCGTGCTTAACCTCGCTATTACAAAGATTCGCC
GTCATGTTTTTTTTTCATTCAATCATCAGGTACACAATACTCCAAAATAT
GCTCTTCGTTTTGACGGTCAACCACCGCGTATTGGTCGAAATGGAACAAT
GTCGCATAATGTTGCTTTTCAATCAAACGGAATCATGGTCAAAGGTATTT
TCTATACATTTATTAAATTCATGTAAATGAGGTAAATTATAGAAGAAATG
TTTTCAATCAAGAAAATCTATTTGAAATATTCAAAAGGGGATAAGTATAA
ACCATTTGTAATCAATGTGTTCATAGAATGATATCTAATCCCCAGTCCAT
GGTGTTGGTAACAAAGAATTCTAAGCTCTGGTCTAGACTGCCCACTTTTC
GCCCTGCCAATACTATTTGTGAACTAAAGTGGGTAGAAAGTTGGTTGTCT
AGAAAGTCAACGCATTGCCCTCTTTTGACGTCAATACAATGACATTTTTC
AATCTTTTTGAAACGAAGATTTTAAAATGCCAATTTTATGCTCAATTTTT
GTCTGCTCTAACAATTAGAATAAACAGGACAGAAAGTCGGCCGTCTAAAC
TAGTAGAGTTTATAAACTCAGTAGTCAATTTTAATTACTCTTTCAGGCGA
CAGTCATTTGGTAGAGAACAACTTGGCTTTCCAGAAATACAATGAAAATG
ACGATGACAAACAGGGCACCGGATGTTCCCTGTGTATCCTCAAATTCGTT
CGAGCAAACCCTGGTCAAATCAACAACAACTCAGTAGTCATCAACAATAT
AGCAGACAGGGCGAATGGCGGAATTAACGTATGGAAAAGACCAAATGTCT
TCCCAGTACCAGGGCGTATCGTTAAAAATAATAAATTCAATGCGAAAATT
GCTGAACAAATTATGGATCATAATAATTTCGATTTTAGGCCAGTCAAAGG
TTCTCGAGCTGCTGTCAACGGAATAGGCCCGTACCGCTACGAAGAACGAA
TGACTGAATATTGGATTCCCGGGCGTAAGTTATACAAAACATCCACCCCA
GTCCCACAAAACGGCTCGGTTACCGTTAAAGCGGCTCGCCGTGACGCCGT
CATGTTTCTGCAAGCTTGGGACTGCCGTACGCATATTATTTATTTTGGAT
CAAACAAAAGAGCCGTTGAAAATGCTCGAGATGTCGACGATATCAATTAC
CTTGGAACTCTTGAGAATGGTTCCAACGTTTTTTATCTCCCTAATAAATT
GTCCAAATTAGCCACCTACTTTTGGCGTGTGGACGCTATGACAGACACAG
GTATAGTTTATAAAGGAGATGTATGGAATTTTACAACAAAAGGCGACTTG
TAAATTTGTATTGCATATCTTTTTATCAGAAGAGATTTCTGCCAATAAAC
TTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031712XLOC_031712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050088-exon-scaffold_167-1575043694:964516..964705TCONS_00050088-exon-scaffold_167-1575043694:964516..964705Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1575043694:962579..962789TCONS_00050088-exon-scaffold_167-1575043694:962579..962789Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1575043694:961435..962319TCONS_00050088-exon-scaffold_167-1575043694:961435..962319Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1575043694:960819..960975TCONS_00050088-exon-scaffold_167-1575043694:960819..960975Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1575043694:960312..960426TCONS_00050088-exon-scaffold_167-1575043694:960312..960426Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1575043694:959102..959859TCONS_00050088-exon-scaffold_167-1575043694:959102..959859Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1510915933:964516..964705TCONS_00050088-exon-scaffold_167-1510915933:964516..964705Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1510915933:962579..962789TCONS_00050088-exon-scaffold_167-1510915933:962579..962789Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1510915933:961435..962319TCONS_00050088-exon-scaffold_167-1510915933:961435..962319Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1510915933:960819..960975TCONS_00050088-exon-scaffold_167-1510915933:960819..960975Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1510915933:960312..960426TCONS_00050088-exon-scaffold_167-1510915933:960312..960426Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1510915933:959102..959859TCONS_00050088-exon-scaffold_167-1510915933:959102..959859Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1491911889:964516..964705TCONS_00050088-exon-scaffold_167-1491911889:964516..964705Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1491911889:962579..962789TCONS_00050088-exon-scaffold_167-1491911889:962579..962789Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1491911889:961435..962319TCONS_00050088-exon-scaffold_167-1491911889:961435..962319Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1491911889:960819..960975TCONS_00050088-exon-scaffold_167-1491911889:960819..960975Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1491911889:960312..960426TCONS_00050088-exon-scaffold_167-1491911889:960312..960426Clytia hemisphaericaexon
TCONS_00050088-exon-scaffold_167-1491911889:959102..959859TCONS_00050088-exon-scaffold_167-1491911889:959102..959859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:959102..964705 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0841902	0.0985184	0.0285973	0.055956	0.249777	0	0.205656	0.253332	0.0709454	0.123028	0.0511776	0.0784983	1.5689	3.6623	0.87963	0.965259	8.73757	8.65662	5.49259	4.87837	25.9492	34.9969	3.24451	4.46736	11.7932	12.2965	0.0230883	0.0123202	0.0560667	0.019041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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