TCONS_00050090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050090
Unique NameTCONS_00050090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050090 ID=TCONS_00050090|Name=TCONS_00050090|organism=Clytia hemisphaerica|type=transcript|length=1715bp
GTTCAGAAGATTATAGAGCAATTTTATagtAATATTCGACGCCACGACTT
GACGATTTTGTCTTTATTATCTCAATTAAAGTAACATTCGGCAGACACCA
CGAAATGAACACAACTACCAATCCACTTACATGTGTTGGGCTGAATATAA
GTGAGGGGAATAAAACTTTTTGCTATACTGAAACTTGGAAacctttttca
aaggaaatcaCATTGGGTGTTGTGCTTCCACCCTGTATTATCGCTTTCTT
AATCGTTGCTGGTGGATTCCTGTGTAGTGGTATCCTTTATAAACTTGAAG
ACATCCGAGATAAGTATTTGCAACAATATGATAGTAtaaatgaaagtttt
tttagaaaacgaagtgaaaaatcaaaatggttcTTTCTCGTCTTCGTACT
CGATACATGGAGGTATGTTTACGCTGTTGTTGATTTGTGTTTTGATTTGG
TGATCGTTTACAAACTCCAACAAAGTTTATATTTTCATGAAGCGATCTAT
CAGAATGATGCAATCATTTGGTTTTTATATTGTATCGGTTGGTTtgggtt
tttttccaaaatgcaaGGGTTcagctttattttgaagaagaaaCCGCCAC
CTCAAAACAAAGGATTTACAGATTGGAAACTGTTTTTTACACTCTCACAA
TTTTTCCTTGATGAAGGTCCTGaattaattttacaatttttctatATCGA
AAATTATGAAGTTCGATATAAAGCTAAATATATCCTACATGATATGATCC
TATACAAGGACTTTGTATACATCATAGTATGCGTTTCAAAATGCATTTAC
CATTTCTCAAAAACACTTACAGTGATGAAGGATCGGACTCAAAGCTTAAG
AGATGTCGTTGATAAGCTCCTTTACATATCCATATGGCTTTTTACCATAG
CTTCGATTCTAAGAGTCATCGCCCATTTTGTGCAGCATCTAAACAACGAG
TTAACCAGGTTCTGTTACAAAGAATGGAATGGTCGTATCTACCAAACACC
TTTTGATCTGAAATGTATGAGCATCTTGGATTGGCTTCTTTTAGCATTTT
CAGCCATCCCAGCACTTTGTTTTGTCATTGCGTTCTTCATCTTTGTGGTG
GTCCGCTGCCAGGAGTGCCGCATTGAGTCACATGACGCAGACACTGAACC
AATACTTGAAAGATCGTCAGAAGCACGTGTTTGACTCCATTTTTTGAAGA
CTAAACACTAAACACAACAATTTTGAAATGTATGAAGAGACCCCCAGAAG
CGCACTGCATCATGTTATCTCGTCAAGTTTGTTCCCCCAACACAAtcaca
aaaattgactaaaTTTATGTTTACCCTATCACGCACGTCAACAAAATCCT
GATCACACTGTCATGCAAATATAAATTTAGAGTCACGAAAAAGCTTCAAT
TTACACCGTCATCTTAACCGCCTGGAAATCTCCTTGAATACTTGAAGACA
GGTTTTCATTGGTTTTTCTTCTTCTGGAAAGCTCTTATTTCTTCAGCATG
GTCGGaaatgaagaaatttcgacCAAACAAACACTGGAAGTGAAGCGAAC
ATTGATATTGGACAATCATTATCCAAAGTCTTGGcaatttataatattta
tttaaaaagtcTTATACTCATTTAAAATTTATGCACCACTACAGATATTA
TCTTATTGAAAATTATTCACAAAAAGTATGATAACGTCAACTTTTTATAG
GGAAGTCGAGGGCCC
Run BLAST on NCBI

transcript from alignment at scaffold_167:986813..992704-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050090 ID=TCONS_00050090|Name=TCONS_00050090|organism=Clytia hemisphaerica|type=transcript|length=5892bp|location=Sequence derived from alignment at scaffold_167:986813..992704- (Clytia hemisphaerica)
GTTCAGAAGATTATAGAGCAATTTTATGTAAGTGTTCTAATTCTGCTTTA
ATTGTTCGTTTCTTTTATATACTTTGTACTCTTTTCGAAATCTCGACTGC
TACAAAAAACTTTCTACATTTTGACAACAATCTGAGATCAAACAAGGCCT
ATTTTTTCAAATTTTTTTGAAAATTTGGTTTTTACTTGACCAACCTCAAA
GATTTGTTCAGGTCAAAGGGGTTGTCAAAAATTTGGTGAAAGTTTGAATG
TGATATTTTTTTGGTAAAGAATGTTACACATCAAAAATTGGATCAAGAAG
GTGACAATTTTTGTTAGCTTTAAACCCGGCATCCTAAGAGGGTTAAACAG
GTTTCGTTTGAAATGGAAGTATTTTTCATCTTTCTTCTTCCAGACAAGAT
GGCTGACAATTCTCATGGATGGAATTGTTTTGGATGTAATGGAAGAGTTA
CTGTTGGTCAAAGTCAACGATCTTGGATGTGGTTTCGTATTGGTGCGTAC
CTCTTCTTAATATTAGCGTTATTCGCAATACCAAAAGAGTTATATGAAAA
ATGGAATCGCTTGACGCCTGACGAACGCTTGATGTATTTTGGTTTTTATG
CTGCTGAAATTGGAATCACTGTCCTTTTAGTTTTTCCTTTCAGACGTTGC
TGTCAAAAGATTTTTAAACGCAAGCGAATCATTTTCTGGTCTAAAAGCAG
TACGGTCAGTCTAAAATCAGCACTCGCAAACCTTCAGAGGTACATACTTA
CAGAAGAAAAAGCCAAGGAGATTGAAAGAGAAGCAACCAGTTCTATTAAA
GTTATTAGCCAGCACATTTCAAACAGTTTTCAAGGAAACCAAATCAAATT
TTCGTTGACCGGTGGATTTGCAGAAGGGTATGGAGTGCCATTATGGTCAA
AATGGCTTTTAATTGAAGGAGAAGAAAAACTTGACAAAAGTCATGCTCTG
ATTAGTGATTTCGATTTTATGTTTGAACTTGAGAATATTTTTGCTGGATA
CGATCCGTCGGATGATGTTGATTTTCTCATAACAACAAGAGACTGCCAAC
TAGGATTTACTAAACTAATGGTACATAATCAAGATTCGGGATCAAGATTT
GGCTGTGATGGGGAATACCTTTCAGCTAAGTTTGTTAAGCAAAAAATCTA
CACATCCGTTTTGGAAACTGACATGGCGATTTACCCTGGATTCAAAAATT
ATTTACCACTTTGTTGCTTGAGATCCTCTAATGAACATTATGTTGAGACA
AAAATATCTGGCCCTGCTATTAAATTGAAAATATGCAATACTGGAGTTTC
ACATCAGGATGTATTACATACAGGCAAACATAGTTTTAGTGATATCAGAA
TGAATTCAAAGTATCAACCAGAAACAAATCATTTATTAGCTGATATCACA
TTTAGCATCTGGTGTAAAGAGTTTCCACGCAGCTCAAATTTTAACAAGAG
AAACGACCGACGATGGCCGAAACCTGAAGACGTAGAGCGAATCGTAAATA
TGGGGTGTCATTTGGTTCCCAAATCGCAGGAAGAAAACGATACAAAGGAG
TTGACTTGGAGATTCTCTTTCTCAAAAGCTGAAGTTGAACTCTCAAAACT
CATCAATTATACTGCTCGAAAATGTTTTCTTGCGTTGAAAGTGATCAGTA
AAGATCACCTCTCATTTACATGCTCTCGACTATCATCTTATCATCTTAAA
ACAATTTTCCTGAACATGGTGGAGGAAACTGGTCTGGAAGCTTGGACTGA
AGAAAACATTGAAACCATGTTCAGATCTTTGTTAGGAGAAGTGAAAAGTG
CAATTGACAGTAAAAGATGTCAACATTTTTGGATTCCCGAGATCAACTTA
TTTGAAGACATCCCAGACAGAAAGTTATTTTCCCTTTCAAAGATTTTTGA
TAAGGTTCTTGAAAATCCAGCACCGTATATTCAACATAAAAAGAAAGTTG
ATAAGGAGCATGACAACCAGTCAAGAGATGTCTGCGTTGATTTAGAGGAT
GTTGAAATGATTGGAAATAATTTGACCGAACCATTGATACCTAGATCTGC
AAGATGATATCTGTGAGATAGCAAATCAAGCGAAAATACAACACTCTCTT
GTCTGTCTTCAATGAACGAGAGCGATTTTTGCTGATTTTAGCTGACAAAT
GTTTTCCTAAAATTAGATAAGTAAAGGCACTATTTAACTTTCAGATTTAT
TTTGTAATTTCATAAAATTTTAAACTCTTCAAAATTTGTCAAATACTATT
CAAATTTTATTTTGAGATATTTCCTTGTCTTTTTCGTTCAGGTATTACAA
ACTTCAGGCCCGGCGGAAGCGGGAGGCGTATTTTTTCTCCGTCAGCGTTC
GCAACCCAACTTCAGCGGTCGAAACCCAACTTAGTGGTCGAAGTAGGCTT
CTGTTCATTCTCTAGCGAAAAAAGTTTCTTATAACCCATTTTAGTGGTCG
AAGCCCATGTTTTAAATTGAAGGGGATTTTTTAAAGGTCGAAACCCAACT
CAGGTGAGTAAACAAACTTCACAGATGAATGATTCTTTTGTTTTGACATT
TCACGAATGGAAAACAGATACCTCTATTTCCAAGAATTGACTTCATGAAA
ACACAAGAAAAAATCATTTGTTCATCATAAAATTTTTAAATAAATATCAT
ATGATATTTTTCATCCATACACTACAGTCGTGACTATAGTTACAGTATCA
ACCTTGTTAAAAACCTTAATCAACAAAAATGTGAATTCAGATATTTGTAT
TTTGAGCGAAATTTTTCTATCACATTGAAAAATAACATAAAAAGGATAGA
GAATCGTATATCAAGTCAACATTTGTTTCACATAGTGTGTCTGGTTGTTT
AGTTGTTTGGGTACTTTAAGTGACTTTATTATCTTAAAGTTATATTCGAC
ACCACGATTTTGTCCATCAACTAGAGTCTATTCACGATAAGTGTGCACTC
TTTTTTCTTTCACCTATAACTTTTGAAGGAATTCTTCAATCTTTATAAAT
TTGGTATAATTGGAAAGACATTAGTGAGTGGAACAATTTGAAATAAAAAA
AAATTCAAAAAAATTCTAAAAATGAAGATGAAAATGAAGAAGAAAAAAAT
GAAGATCTTGTAGAAAAATGTTATAACTTTCATTTTCACTGGAGAGATTC
TTTGATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCATTTTCATCTTCATTTTTATAATCTTTTTAAAGTTTTTTTTA
TTTCAAATTGTTCCACTCACTAATATCTTTCCAATGATACCAAATTTATA
AAGATTCAGGAATTCCTTCAAAAATTATAGGTAAAAGAAAAAAGAGTGCA
CACTTATCGTGAATAGACTTTAATTACACGGCGGAGCTACGGAAGGAGAA
GCAGAGAAACTAAAAGATACTTAATCTTTATAACTAGATATTTATGAGAT
CATGTTGAAAGAAGAACTAAAAGTAACAGCCTAGCTCATCGGTAGTGTCC
AATTTATTAAATATCCAGCTCAGGGATATATTGATGTCCTAGAATTGAGG
ATTGCTAATTTCTACATCAGAACCCATTGATCAAATATTATTATTTTTTT
TTTTAGAGTAAAATATTCGACGCCACGACTTGACGATTTTCTCTTTATTA
TATCAATTAAAGTAACATTCGGCAGACACCACGACTCAACGATTTTGCCG
TTCATCGTGCCAATATGAACACAACTAGNCAAATATTATTTTATTTTATT
TTAGAGTAATATTCGACGCCACGACTTGACGATTTTGTCTTTATTATCTC
AATTAAAGTAACATTCGGCAGACACCACGAAATGAACACAACTACCAATC
CACTTACATGTGTTGGGCTGAATATAAGTGAGGGGAATAAAACTTTTTGC
TATACTGAAACTTGGAAACCTTTTTCAAAGGAAATCACATTGGGTGTTGT
GCTTCCACCCTGTATTATCGCTTTCTTAATCGTTGCTGGTGGATTCCTGT
GTAGTGGTATCCTTTATAAACTTGAAGACATCCGAGATAAGTATTTGCAA
CAATATGATAGTATAAATGAAAGTTTTTTTAGAAAACGAAGTGAAAAATC
AAAATGGTTCTTTCTCGTCTTCGTACTCGATACATGGAGGTATGTTTACG
CTGTTGTTGATTTGTGTTTTGATTTGGTGATCGTTTACAAACTCCAACAA
AGTTTATATTTTCATGAAGCGATCTATCAGAATGATGCAATCATTTGGTT
TTTATATTGTATCGGTTGGTTTGGGTTTTTTTCCAAAATGCAAGGGTTCA
GCTTTATTTTGAAGAAGAAACCGCCACCTCAAAACAAAGGATTTACAGAT
TGGAAACTGTTTTTTACACTCTCACAATTTTTCCTTGATGAAGGTCCTGA
ATTAATTTTACAATTTTTCTATATCGAAAATTATGAAGTTCGATATAAAG
CTAAATATATCCTACATGATATGATCCTATACAAGGACTTTGTATACATC
ATAGTATGCGTTTCAAAATGCATTTACCATTTCTCAAAAACACTTACAGT
GATGAAGGATCGGACTCAAAGCTTAAGAGATGTCGTTGATAAGCTCCTTT
ACATATCCATATGGCTTTTTACCATAGCTTCGATTCTAAGAGTCATCGCC
CATTTTGTGCAGCATCTAAACAACGAGTTAACCAGGTTCTGTTACAAAGA
ATGGAATGGTCGTATCTACCAAACACCTTTTGATCTGAAATGTATGAGCA
TCTTGGATTGGCTTCTTTTAGCATTTTCAGCCATCCCAGCACTTTGTTTT
GTCATTGCGTTCTTCATCTTTGTGGTGGTCCGCTGCCAGGAGTGCCGCAT
TGAGTCACATGACGCAGACACTGAACCAATACTTGAAAGATCGTCAGAAG
CACGTGTTTGACTCCATTTTTTGAAGACTAAACACTAAACACAACAATTT
TGAAATGTATGAAGAGACCCCCAGAAGCGCACTGCATCATGTTATCTCGT
CAAGTTTGTTCCCCCAACACAATCACAAAAATTGACTAAATTTATGTTTA
CCCTATCACGCACGTCAACAAAATCCTGATCACACTGTCATGCAAATATA
AATTTAGAGTCACGAAAAAGCTTCAATTTACACCGTCATCTTAACCGCCT
GGAAATCTCCTTGAATACTTGAAGACAGGTTTTCATTGGTTTTTCTTCTT
CTGGAAAGCTCTTATTTCTTCAGCATGGTCGGAAATGAAGAAATTTCGAC
CAAACAAACACTGGAAGTGAAGCGAACATTGATATTGGACAATCATTATC
CAAAGTCTTGGCAATTTATAATATTTATTTAAAAAGTCTTATACTCATTT
AAAATTTATGCACCACTACAGATATTATCTTATTGAAAATTATTCACAAA
AAGTATGATAACGTCAACTTTTTATAGGGAAGTCGAGGGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031714XLOC_031714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050090-exon-scaffold_167-1575043694:992678..992704TCONS_00050090-exon-scaffold_167-1575043694:992678..992704Clytia hemisphaericaexon
TCONS_00050090-exon-scaffold_167-1575043694:986813..988500TCONS_00050090-exon-scaffold_167-1575043694:986813..988500Clytia hemisphaericaexon
TCONS_00050090-exon-scaffold_167-1510915933:992678..992704TCONS_00050090-exon-scaffold_167-1510915933:992678..992704Clytia hemisphaericaexon
TCONS_00050090-exon-scaffold_167-1510915933:986813..988500TCONS_00050090-exon-scaffold_167-1510915933:986813..988500Clytia hemisphaericaexon
TCONS_00050090-exon-scaffold_167-1491911889:992678..992704TCONS_00050090-exon-scaffold_167-1491911889:992678..992704Clytia hemisphaericaexon
TCONS_00050090-exon-scaffold_167-1491911889:986813..988500TCONS_00050090-exon-scaffold_167-1491911889:986813..988500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:986813..992704 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0961522	0	0	0	0	0	0	0	0	0	0	0.104079	0.296519	0	0	0	0	0	0.18703	0	0	0	0	0	0	0.731619	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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