|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050093 ID=TCONS_00050093|Name=TCONS_00050093|organism=Clytia hemisphaerica|type=transcript|length=3440bpRun BLAST on NCBI protein sequence of TCONS_00050093-protein >TCONS_00050093-protein ID=TCONS_00050093-protein|Name=TCONS_00050093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp MEYTPSAGTQQQILCCQCGTPTPPNPANICIGCIRSQVDITEGIQKQAYLRun BLAST on NCBI transcript from alignment at scaffold_167:986813..1009709- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050093 ID=TCONS_00050093|Name=TCONS_00050093|organism=Clytia hemisphaerica|type=transcript|length=22897bp|location=Sequence derived from alignment at scaffold_167:986813..1009709- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:986813..1009709- >TCONS_00050093 ID=TCONS_00050093|Name=TCONS_00050093|organism=Clytia hemisphaerica|type=CDS|length=25194bp|location=Sequence derived from alignment at scaffold_167:986813..1009709- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00050093 vs. Swiss-Prot (Human)
Match: NMD3 (60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1) HSP 1 Score: 499.59 bits (1285), Expect = 4.406e-164 Identity = 263/506 (51.98%), Postives = 351/506 (69.37%), Query Frame = 1
Query: 76 MEYTPSAGTQQ--QILCCQCGTPTPPNPANICIGCIRSQVDITEGIQKQAYLQFCKGCERYFQPPNMWVVCQLESREXXXX-XXXXXXXXXXAHLIDAGFVWTEPHSKRIKVKLTVQKEVLGSTILQQTFIVEFQVQGQMCDDCHRREAKDFWKAVVQVRQKVPHKKTFYYLEQLIIKHGIASSCLNIKQVHEGLDFYYANKQHAKRMVDFLSTQVPLRTKQSERLISSDIRNNTANFKHTFSVELAPICKNDIVCLPLKVARSLGNMSQIAICSKIATTIHLVDPFTGKVGELSGVAYWRAPFLPFTGAKQLAEFTVIDVEINRQTMKS--------KYCQADVYLMKNNVDVGSDMQVHCRTHLGHLLKAGDIVNGVDFTTANLNDDNLAEMKPENIPDVALVKKSFAERTRRRAKRVWRLKELPKETE--EKNPSXXXXXXXXXXXXXXXXRSAINIYKDPSKFATDSASESGDVPRIGLEEMLDDLKI-------EDAEMFT 1533
MEY + + ILCC+CG P PNPANIC+ C+RS+VDI++GI KQ + FCK C+RYFQPP W+ C LESRELLAL K L+K L+DAGFVWTEPHSKR+KVKLT+QKEV+ ILQQ F+V++ VQ QMC DCHR EAKDFWKAV+QVRQK HKKTFYYLEQLI+K+G+ + L IK++H+GLDFYY++KQHA++MV+FL VP R K S+RLIS DI +NT N+K TFSVE+ PICK+++VCL K+A+SLGNM+QI +C ++ + IHL+DP T +V ++ G +W PF KQL EF V++ I + ++ K+ +V++ K + ++ +D Q CRTHLGHLL GD+V G D NLND+++ +M + +PDV L+KKS+ +RT+R+ +R W+LKEL +E E + + Y DFLEDLEED+ R +NIY+D S +S ++ PRI L EML+DL I E A M T
Sbjct: 1 MEYMAESTDRSPGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTS-EMNTDKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSY-DRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYRD-SAIPVESDTDDEGAPRISLAEMLEDLHISQDATGEEGASMLT 503 The following BLAST results are available for this feature:
BLAST of TCONS_00050093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.