TCONS_00049927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049927
Unique NameTCONS_00049927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049927 ID=TCONS_00049927|Name=TCONS_00049927|organism=Clytia hemisphaerica|type=transcript|length=2547bp
CACAACTCAGAGGTGGGATTGTGGAAAACCTTGTGGAAGTGGCAGTTCTG
GCAGTTCagaaaaaaaggaacaaaaaaagGTAAATGGAAAGTCAAACACA
AACAAATAAATCCTCCCTTAACATCTATCACGTCGTTACATATATTGGAT
GCTCCAATTTCAGCCCATAGCAGCTAATTAAGCAGAATTGTGTACCATCT
TTATTGAAGATGGCAGCAGTGCAGCTTTTCAGAAGAACAATTTTAAAGaa
tcataatttcaaaaaggCTGGTAATGTTCTGttaaattttccatcaaaaa
tagTGTCAAATAATGTTGGTGCTGCTTCTCAACTTTCGTTTGAAAGGTTT
TATCGTGGAAGTAACAGAAGTAAACGGCTTAAAGAGGcaagagaaaagaa
aaagttggaAAGAGATCTTGAAAACAAATATGGAATCAAAAGCAAGCCtg
aattcaattttaaaacatgGATGAAGGAAAACTATATGAAAGAAGTTGAT
GCCTTTCAGAGCAGAATTGGTATTCAGTTCAATGACACCAAAATGTTGAT
TGGTGCTTTTGCCCACAATTCATTTCGTGATGAGATAGGAGCATTGGTAT
CACTATCTAACTCAGAAGATACAGCAACTGCAGATATCTCTGCAAGATTG
CAGATCATTCGTCATTTACCTGATATCACCTATGATCGGTTATCACTACT
GGGTTATGAAGTTGCAACATCAATCATTAAAGAAGAGCTCTACAACAAGT
ATAAAAATTTAACCCCTTCTATTTGTCAagatgtttgtttatttttgaca
aGCCGTGAAGTTATTTCTAGCTTAGCCAAAAACATTGGCTTGGAAGACTT
TTTGCTCTTGTCTCGTGAACTAGACAACCTCAATGAAGAGGCAGAAGAAA
GTGTTTATGTAAACACAATGGAAGATTTGTCAATTGATACCTTTTTTGCA
TTACTTGGAGCCATCGAGAAAGATCTTGGCCAGACTGAAACAATAAGTTT
CATAAAGGATTTCATATTGCCCCATCTTGACCATACCGACTTAACAAAAT
ATGTTGAGATGGAGGACCCACATGGGGAGCTtatgaaaatcttttctttG
CAAGGTATTAGTACAACTGTTAGAGCTCGAACAATTGTTGAAACAGGAGT
GGATTCACACTTTCCAGTATTTCAAGTTGGGATTTTCTGTAGAGGAAAAC
AAATTGGTGAAGGAACAGGCCATTCAACTTCAATTGCCCGAGAGAATGCA
TTCAAAAGTACTGTTTTTCAATGCTTAGAAAATGAAGTTGATTTTACAAG
GCTTAGGAAAAGCAGTTCAAAGTAGTATATATCATATAAgaattttatac
aaaattttgTATACCCTTGTATGGTATATTAGAATATATTAGActggtaa
aacttattttttcaatcagtTTGTTCATTTTTCTGTGAAGATCTTCCTTA
ATGGGAAACTTATAACAAACtacttaaaaaaagaatgatcaAATGCTTCT
TCTTTTTTGGAAAGGTctggagaaaacattttaagaaaatgatTGGAATT
ATAATTTCATTTATGAGATTTTAAGCTTAGTCTGATTGAATTCTACCATA
CTTTTTATGATTATTTTCTTCTACTCAAgaataaacatttaaaatgaTGC
CAAATCGCTACTTTCAAGTAATGAGAAAATTCCCAAAGAGATTGCCCAAT
GCAGCCGTCTGCCAGAGGAGGAGTTTATCATTAATTTCCAAGTGTGTTAC
TGGGCCTACACAGCAACCAAGACATTTATTAAGAAAAACCTTACCATGTG
TTAATGTCATATCAGCAAGAAGTATGTTTATTCGTGTTCAAGAAACTCCT
AATCCAAATAGCTTAAAGTTTATCCCAGGAGTTGAAGTTCTTGAGAGTGG
AACTGTTGACCTACCCACACCCTCGCATGGCTATCGTTCACCGTTAGCTA
GACAGCTGTTCAGAATCCATGGAGTGCGTGGTATTTTTTATGGCAAGGAC
TTCATCACAGTAACAAAATCAGATGATAGTGATATGACATGGACTCTTCT
AAAACCAGATATTTTTGCTGTCATTATGGACTTTTTTGCAACCAACATGC
CAATATTAACAGATGAACAGCCTGCAGAGGATACTGCGATTTCTGAGGAT
GATGATGAAGTCGTTACATTGATCAAAGAATTATTGGACACGCGTATACG
ACCAACTGTTCAAGAAGATGGTGGTGATATCATATTTAAAGGCTTTGACC
CTGAATCAGGAGTCTTGCAGTTGAAACTTCAAGGATCGTGTTCAGACTGT
CCAAGTTCTTCGATTACTTTGAAGAGCGGTGTTCAGAATATGATGCAATT
TTATATTCCAGAGGTAACCTCTGTTGAAGAAGTCACTGATGAATTGGATG
ACGTAAGCAATGAAGCTTTACAAAAACTGGAAAATGAATTGAATTCTAAA
GAGTAGATTAGTGCACTAAAAGcctaattttacttttttcttaatAATAA
CAATACTTAAGTTACTTGACTGTAATAAGAATCTTTTTGTAATTATA
Run BLAST on NCBI

protein sequence of TCONS_00049927-protein

>TCONS_00049927-protein ID=TCONS_00049927-protein|Name=TCONS_00049927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MAAVQLFRRTILKNHNFKKAGNVLLNFPSKIVSNNVGAASQLSFERFYRG
SNRSKRLKEAREKKKLERDLENKYGIKSKPEFNFKTWMKENYMKEVDAFQ
SRIGIQFNDTKMLIGAFAHNSFRDEIGALVSLSNSEDTATADISARLQII
RHLPDITYDRLSLLGYEVATSIIKEELYNKYKNLTPSICQDVCLFLTSRE
VISSLAKNIGLEDFLLLSRELDNLNEEAEESVYVNTMEDLSIDTFFALLG
AIEKDLGQTETISFIKDFILPHLDHTDLTKYVEMEDPHGELMKIFSLQGI
STTVRARTIVETGVDSHFPVFQVGIFCRGKQIGEGTGHSTSIARENAFKS
TVFQCLENEVDFTRLRKSSSK
Run BLAST on NCBI

transcript from alignment at scaffold_167:1009922..1021646+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049927 ID=TCONS_00049927|Name=TCONS_00049927|organism=Clytia hemisphaerica|type=transcript|length=11725bp|location=Sequence derived from alignment at scaffold_167:1009922..1021646+ (Clytia hemisphaerica)
CACAACTCAGAGGTGGGATTGTGGAAAACCTTGTGGAAGTGGCAGTTCTG
GCAGTTCagaaaaaaaggaacaaaaaaagGTAAATGGAAAGTCAAACACA
AACAAATAAATCCTCCCTTAACATCTATCACGTCGTTACATATATTGGAT
GCTCCAATTTCAGCCCATAGCAGGTATAAGGTGTATCcgtaatttatcgt
tctttgCTTCGTGGTGTGTGTGTGTCATGTGAATGTGTGTgttcagtcag
ggaaatccctcaattgcggtatactgcaattgcggtagcTCTCATTCGTG
gttagcctacaaaggcttataacggctaccgtcaactgctctaacttggg
acgattggtcgaaacatggggaCTCTGTGCTGTTGCATAgctatctggtc
tgtattttcacttactgtaaaatcgaaagagaaatcgtgtatttttaaat
acgcggttccttaactcaaatcaaatgactttggaggttcggtgaaatgg
tggctgaattgccgtcccatgttttgtcagatagtcccaagttagagcag
ttgacggtacatatagtgctggtcgacaaagataaacaaacatcaactgt
aaaaaattgtacgagaagaaagtttttctttattaaaagaatctgatcta
cagaaaaatagaccttttttcaaagaggccaccctgttgaataattatgt
agtccagcagaaaaacaatgataaaaccatacataattattacaataccG
TAGAAttgtctaatatcgacatgcgtcttctaaagtcgacaccggatctg
taaaataatcaaaacaaaccttgaatgaaattcttggtatcattcttatc
aaacaagttcatccatcaaactagaagttctataaacattgcaatccttt
caattaaaaaaacagccaaattataagcagttttacacagcacaagaaac
gcatgcaaacttccttgtaactttctcgtgtctatcattaaaattttaca
actttattacgcttcaagtcacgtgataaaaataattcgcgcgcttagcc
tggtttccccttccttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gtcacattaaattcaaaaggaaaccgggttctttttattattttcggttc
acggtaaaaaggtctactaaaaaattcctcgcgtgcaaaatgttgttttg
atctGGATATCTTCGTTCCGTtgaatgaaagcatgctaattagtttttag
tgactacatcgttaaagttttcttttggaaaaaaacccacttcacgtttc
ttacatttcaacaatctgtgacgtgatagggagagtacaatttagtgatt
gattgataactttggtatgtatttgtttatgtttgatttttggacctacc
ccggccTGCCAACTTAAGATGTTCATTTggcgtgagataaaaatttcgaa
ggaaaatcCGAAATCTTAGccctatttttccgattttccgaCTTCGGAAA
Acggaaaaatttttctaaaaaatcggaaaatcggggaaatttttttccaa
aaatcggaaaatcagggaaatttattccgaaaatcggaaaatcggggaat
ttttttttccaaaaatcagaaaatcgggaaaattttttccgaaaatcgga
aaatcggggaatttttttcttccaaaaatcggagaatcggggaaatttat
tccgaaaatcggaaaatcggggaaatttctttcaaatatcaaaaatgcgt
gagaaatcaaacttttgaaaaattgcgtgAGACAGTGTTGAAATGCGTGA
GTCTCACGTCCAATgtgtgagagttggcacctctgcATTATAATTTCTGT
CTTTAAGAGNAAATGCGTGAGTCTCACgtccaatgcgtgagagttggcac
ctatgcccggtggggtggaggtcctataaattaacctgtgttagtccgtt
cgtccgtccgttcgttcgtctgttaccaacttttctcaggattgaatcat
aggaatcttttaatttttggtacaaaggtgcaaaatggtagtggccaaaa
tgtgacggagcctgattttcgaaacaaaaattttttgggcaaatttgggc
taaaaaacggctaaaaaacaggttttttggactttgtgaaaaattggatc
attaattttttctgattttttgcatgaaNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgctttg
catttagtgggttcgaatcccaccggtggcgatctgtcggtaagtcattc
agtaagttagaaaacatagaaaataactcacaaagaaccagaaagtcgga
aaaactacgaacaagagactggaaagtacgaaataaatccagatctgtct
ttcgtctttatgaagaagccacgCCAGAATAAAAGGGTTCTATCGCAAAA
TttcgactttttgaattttatgcaTGAATGAAATCTTGAGGGCatagaga
aacattttttcaactagTTTTACCGGTTacttttttcagtttctcaaaAT
TAAGAAGATAAATAGGTTCTATcccaaattttgactttttcgttGGAAGA
AAAAGGTTCTATCAGGCAAATAGAACCTTTTAGACGTTATTTTGCCGATC
GTGCAATCTTTTTCCGGTAAgaagcaacaaaaataaaaaggttctaTTTA
ATTTGGATAAAAAGGTTCTATTTAGCACATTCATTGAAAAACACCCAAAT
TTCACTTTTAATGCACCCGTATGCATTTCTTTAGATGTGTTATTGGTGGA
AATGGCAAAAGAATTGAATGTAAGacgtaccgtgagtggtcctaaattcg
acagccctgcctaaatccgatggggtctttcaaagatacaaactaaaata
aaaacaaacctttcgctgtgacgNGAACTAACCttaagaaattaagaaaa
attgacaatagaACCTTTTTATTATAGCAATTTTGggaacattaaaaata
aaaaggttctaTCCAAAAAATCACTGCTTAATAAAAACAGGGGAAATGaa
tgtaagaacatttaaataattctttttgtagTTGTAGGACacaatctttc
agaaaaacatGGTTTTTAGGTTATCAACAATGTGGAACCAGGTTATTTTT
Catgtaattttttcaaaacgattttaacaaaatcaaagaaaatgtcaaat
gGAACCCTTTTATTCCAAGGTCGCGAAATCtcaactttaaaatgaaaatg
gcaTAAAACGAAGACAaatggcattttcattttctctttagaagattctt
tagcctttttataaaatttttgtctacaggttaaaattttgatctgtgca
tttttttataatcaagtGTAACATTTTCCACTCTGTGTAAATGCAACGGG
TCGCAGTGATCGAGTGTATttcgtcactttcgttttccacCCGTTGCATT
TGCCGCATGTCGAACcctgtgcaaatgcaaggatttccgtGACTGTCTGT
GGTTAAACAATAGCGTAAATAACAAGTATAGGGTCGGGTGGTACTCACTA
ATAAATTCGGGTTTGGAATGGctaaatattttgttcttaatttgtcattt
aattgttgttttttcttgtcCTTTGTCGTTATTTCTCAGTCAGGCAGGGG
GGTACCGTcagtcaactgctctaacttttgggacgattggtcgaaacatg
ggactgttgatatctggcctgtattttcacttactgttaaatctctttga
caacaaatttgttttgataactccaccaAGTTTATCAATCATACTTTCTG
TCTtgacatgtcacgataactttcactgatagcgcgcccttttaactttt
ttgttttcattcaaaacgtGACTATGACCTAATAaggcagttaggaacat
ttgacGAGTTTCTGTACGCGACCGCAATCAAAataatcataacaacactc
attaaaaaatggcgttcgtgtcttttctcactttttttagcctagacgct
gtaacaaacaaagtaagtataggcacactgtgcttttaattggctgaaat
tttttttcgcgctggaaaaactttttcaaactttcagcaatgattgacca
aactgttataatgaaaattatccagcgcattttttatcttcttaccttct
tcattttcaatgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGgcatttatttggaacct
aagagtactcaCCACTTCAGTGTCGATAGGTTGTTGCGTTCTCCTAAACG
ACTATTGAACTCTCAATTATTAGGCCCACTTTGCCTTctttggttttgtt
ttcaactggtttttggtTGAATAATATTAAACCGGCAAAATCAAGACATC
GGCTATTatataaacaaatttacaacaaTTGTGTTTTGCTTTCTTTTCCA
TGTTGTCTTTcagcatcgatgcaggatccttttagatattattttgaaat
tttccttattattttacaagtatagaaaaaaattttaaatcaccTTTAAA
AATCCCAAAACTATTTCCTGAAATAGACCCTTTTGTTAGTCAGGAAGTCA
TTttgaataattgaaaattccAGCATTAAAAACAATGAGATATTAAGTGT
GTATAATTTTCTTATCGTTGTTTTGATATCTGTTGATGCTGAAGTTTTTA
TTATTCAACAACCTCTTGGGGTGCATAAGGAACTCCCTAATGGTCGTATG
AGGTTCCGCCCCTTTAATGTAAATGTTTGTAGGTTTTTCAAAGCGTTTTG
ATATCGAAAATGAGATGGGGCATGATCAGATGGTCAAACTTGctgcaaaa
tgaaaaaaaatcaaaaataccaaatttttttgttgtgatttttgctgaca
taagcaaaaaaatagatttttttcatggaTCGTTTCCTTTCATCCATTTG
CacctttagtgaaaatttgaagtcaaaagCTTTCTCCTATTTGAAGTTAT
CAAGATTTTCTTTCTATGATGTCCTGTGATGTCATCAAAATGGAGCGAAA
TcgatattttctcaaaaaatttcaattatgGAGCAAGTTGGACCATCTGA
CCATGCCCATCTCATTTTCTATATCAAAAGGCTttgaaaaaacctaaaaa
aacatttacgttAAGGAGTGGAACCTCATGCAAGTTTGCCTAGTAATTAG
CAaagtattttacaattttcttgaCTTTCCGAATCAGGAAAGTGAAacta
tttttataaaactttgctagaaatacaaaaagttgCTTGTTCCCAATAGC
ATAATTTGATAGATACCAACCTTCTCTATGCTCtacaaaaattgaaagtt
tcaaaGTGTAATATCTTTTTCTATTTGTACTTTTCCTGGCCAAGTTTGAA
GGTAAATGCTACAATATCATTTTTGTCAAACTGTTTGAAATAAATTAGCA
AatgttttattaaattatttattAACATCTCAGCCAATCAGAGTTTTGAT
AGCATCCAACTTTCAAGAAAGGTGTCATTAGGGGTGATAGTATTTTTCTC
TTATAAAATGGAAGCTTTATTAAGCTTAAAGAGGGAGTCAAATAAGTATA
AAGGCTAGCAAAAGCCTGGTCAAACTGTCCATCATATTCAATTTTGGGTA
AAATATTTGgtagatgaaaaaataatgtcaaagTAAGATTTTCTCTCTCA
GCACCTTTcacctttttaaacttttccctttaaaattagatttttttttg
cattagcAGGTGGTAAGCTTAATTTGGGATAGAAGTAGATATATGTATAG
GGCAGGGGATGGAGTATAAATGGGGACTTCACACCCTCCTACCTATTATG
GGAATCATTATTGACAAATTTAATCAAGTTTGTGAAAGTAATGGAACAGA
ATGACTGtattaaaaagtaaaataaatgtCCTTCAACTATCTAAAACTAT
AATAATCTTTAGGGGCTGTAGGGATAGATATAATAGATCTTTCATTTCAA
AAGGCCTTTACAAAAATCGAATTGGACAGACTATACCCAATTGTTATCTT
GCAAATTACACCTATCAAAATCATTAACcttttaattttaaaactttata
gCTAATTAAGCAGAATTGTGTACCATCTTTATTGAAGATGGCAGCAGTGC
AGCTTTTCAGAAGAACAATTTTAAAGaatcataatttcaaaaaggCTGGT
AATGTTCTGttaaattttccatcaaaaatagTGTCAAATAATGTTGGTGC
TGCTTCTCAACTTTCGTTTGAAAGGTTTTATCGTGGAAGTAACAGAAGTA
AACGGCTTAAAGAGGcaagagaaaagaaaaagttggaAAGAGATCTTGAA
AACAAATATGGAATCAAAAGCAAGCCtgaattcaattttaaaacatgGAT
GAAGGAAAACTATATGAAAGAAGTTGATGCCTTTCAGAGCAGAATTGGTA
TTCAGTTCAATGACACCAAAATGTTGATTGGTGCTTTTGCCCACAATTCA
TTTCGTGATGAGATAGGAGCATTGGTATCACTATCTAACTCAGAAGATAC
AGCAACTGCAGATATCTCTGCAAGATTGCAGATCATTCGTCATTTACCTG
ATATCACCTATGATCGGTTATCACTACTGGGTTATGAAGTTGCAACATCA
ATCATTAAAGAAGAGCTCTACAACAAGTATAAAAATTTAACCCCTTCTAT
TTGTCAagatgtttgtttatttttgacaaGCCGTGAAGTTATTTCTAGCT
TAGCCAAAAACATTGGCTTGGAAGACTTTTTGCTCTTGTCTCGTGAACTA
GACAACCTCAATGAAGAGGCAGAAGAAAGTGTTTATGTAAACACAATGGA
AGATTTGTCAATTGATACCTTTTTTGCATTACTTGGAGCCATCGAGAAAG
ATCTTGGCCAGACTGAAACAATAAGTTTCATAAAGGATTTCATATTGCCC
CATCTTGACCATACCGACTTAACAAAATATGTTGAGATGGAGGACCCACA
TGGGGAGCTtatgaaaatcttttctttGCAAGGTATTAGTACAACTGTTA
GAGCTCGAACAATTGTTGAAACAGGAGTGGATTCACACTTTCCAGTATTT
CAAGTTGGGATTTTCTGTAGAGGAAAACAAATTGGTGAAGGAACAGGCCA
TTCAACTTCAATTGCCCGAGAGAATGCATTCAAAAGTACTGTTTTTCAAT
GCTTAGAAAATGAAGTTGATTTTACAAGGCTTAGGAAAAGCAGTTCAAAG
TAGTATATATCATATAAgaattttatacaaaattttgTATACCCTTGTAT
GGTATATTAGAATATATTAGActggtaaaacttattttttcaatcagtTT
GTTCATTTTTCTGTGAAGATCTTCCTTAATGGGAAACTTATAACAAACta
cttaaaaaaagaatgatcaAATGCTTCTTCTTTTTTGGAAAGGTctggag
aaaacattttaagaaaatgatTGGAATTATAATTTCATTTATGAGATTTT
AAGCTTAGTCTGATTGAATTCTACCATACTTTTTATGATTATTTTCTTCT
ACTCAAgaataaacatttaaaatgaTGCCAAATCGCTACTTTCAAGTAAT
GAGAAAATTCCCAAAGAGATTGCCCAATGCAGCCGTCTGCCAGAGGAGGA
GTTTATCATTAATTTCCAAGTGTGTTACTGGGCCTACACAGCAACCAAGA
CATTTATTAAGAAAAACCTTACCATGTGTTAATGTCATATCAGCAAGAAG
TATGTTTATTCGTGTTCAAGAAACTCCTAATCCAAATAGCTTAAAGTTTA
TCCCAGGAGTTGAAGTTCTTGAGAGTGGAACTGTTGACCTACCCACACCC
TCGCATGGCTATCGTTCACCGTTAGCTAGACAGCTGTTCAGAATCCATGG
AGTGCGTGGTATTTTTTATGGCAAGGACTTCATCACAGTAACAAAATCAG
ATGATAGTGATATGACATGGACTCTTCTAAAACCAGATATTTTTGCTGTC
ATTATGGACTTTTTTGCAACCAACATGCCAATATTAACAGATGAACAGCC
TGCAGAGGATACTGCGATTTCTGAGGATGATGATGAAGTCGTTACATTGA
TCAAAGAATTATTGGACACGCGTATACGACCAACTGTTCAAGAAGATGGT
GGTGATATCATATTTAAAGGCTTTGACCCTGAATCAGGAGTCTTGCAGTT
GAAACTTCAAGGATCGTGTTCAGACTGTCCAAGTTCTTCGATTACTTTGA
AGAGCGGTGTTCAGAATATGATGCAATTTTATATTCCAGAGGTAACCTCT
GTTGAAGAAGTCACTGATGAATTGGATGACGTAAGCAATGAAGCTTTACA
AAAACTGGAAAATGAATTGAATTCTAAAGAGTAGATTAGTGCACTAAAAG
cctaattttacttttttcttaatAATAACAATACTTAAGTTACTTGACTG
TAATAAGAATCTTTTTGTAATTATA

Coding sequence (CDS) from alignment at scaffold_167:1009922..1021646+

>TCONS_00049927 ID=TCONS_00049927|Name=TCONS_00049927|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_167:1009922..1021646+ (Clytia hemisphaerica)
ATGGCAGCAGTGCAGCTTTTCAGAAGAACAATTTTAAAGaatcataattt
caaaaaggCTGGTAATGTTCTGttaaattttccatcaaaaatagTGTCAA
ATAATGTTGGTGCTGCTTCTCAACTTTCGTTTGAAAGGTTTTATCGTGGA
AGTAACAGAAGTAAACGGCTTAAAGAGGcaagagaaaagaaaaagttgga
AAGAGATCTTGAAAACAAATATGGAATCAAAAGCAAGCCtgaattcaatt
ttaaaacatgGATGAAGGAAAACTATATGAAAGAAGTTGATGCCTTTCAG
AGCAGAATTGGTATTCAGTTCAATGACACCAAAATGTTGATTGGTGCTTT
TGCCCACAATTCATTTCGTGATGAGATAGGAGCATTGGTATCACTATCTA
ACTCAGAAGATACAGCAACTGCAGATATCTCTGCAAGATTGCAGATCATT
CGTCATTTACCTGATATCACCTATGATCGGTTATCACTACTGGGTTATGA
AGTTGCAACATCAATCATTAAAGAAGAGCTCTACAACAAGTATAAAAATT
TAACCCCTTCTATTTGTCAagatgtttgtttatttttgacaaGCCGTGAA
GTTATTTCTAGCTTAGCCAAAAACATTGGCTTGGAAGACTTTTTGCTCTT
GTCTCGTGAACTAGACAACCTCAATGAAGAGGCAGAAGAAAGTGTTTATG
TAAACACAATGGAAGATTTGTCAATTGATACCTTTTTTGCATTACTTGGA
GCCATCGAGAAAGATCTTGGCCAGACTGAAACAATAAGTTTCATAAAGGA
TTTCATATTGCCCCATCTTGACCATACCGACTTAACAAAATATGTTGAGA
TGGAGGACCCACATGGGGAGCTtatgaaaatcttttctttGCAAGGTATT
AGTACAACTGTTAGAGCTCGAACAATTGTTGAAACAGGAGTGGATTCACA
CTTTCCAGTATTTCAAGTTGGGATTTTCTGTAGAGGAAAACAAATTGGTG
AAGGAACAGGCCATTCAACTTCAATTGCCCGAGAGAATGCATTCAAAAGT
ACTGTTTTTCAATGCTTAGAAAATGAAGTTGATTTTACAAGGCTTAGGAA
AAGCAGTTCAAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031647XLOC_031647Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049927-proteinTCONS_00049927-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049927-exon-scaffold_167-1491911889:1009922..1010094TCONS_00049927-exon-scaffold_167-1491911889:1009922..1010094Clytia hemisphaericaexon
TCONS_00049927-exon-scaffold_167-1510915933:1009922..1010094TCONS_00049927-exon-scaffold_167-1510915933:1009922..1010094Clytia hemisphaericaexon
TCONS_00049927-exon-scaffold_167-1575043694:1009922..1010094TCONS_00049927-exon-scaffold_167-1575043694:1009922..1010094Clytia hemisphaericaexon
TCONS_00049927-exon-scaffold_167-1491911889:1019273..1021646TCONS_00049927-exon-scaffold_167-1491911889:1019273..1021646Clytia hemisphaericaexon
TCONS_00049927-exon-scaffold_167-1510915933:1019273..1021646TCONS_00049927-exon-scaffold_167-1510915933:1019273..1021646Clytia hemisphaericaexon
TCONS_00049927-exon-scaffold_167-1575043694:1019273..1021646TCONS_00049927-exon-scaffold_167-1575043694:1019273..1021646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1009922..1021646 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.9632	52.3533	28.1257	23.9026	23.267	18.4183	19.2945	21.223	23.7969	19.0385	17.6029	16.2303	13.271	13.0379	18.5772	18.3642	33.969	34.5136	6.5652	7.73087	25.1762	24.2381	64.549	56.6281	19.355	19.4695	16.6457	12.4353	31.0911	35.3319
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
molecular_function GO:0004525 ribonuclease III activity
Blast
[Close]
BLAST of TCONS_00049927 vs. Swiss-Prot (Human)
Match: NFU1 (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Homo sapiens GN=NFU1 PE=1 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 8.713e-85
Identity = 135/218 (61.93%), Postives = 170/218 (77.98%), Query Frame = 3 
Query: 1761 QQPRHLLRKT----LPCVNVISARSMFIRVQETPNPNSLKFIPGVEVLESGTVDLPTPSHGYRSPLARQLFRIHGVRGIFYGKDFITVTKSDDSDMTWTLLKPDIFAVIMDFFATNMPILTDEQPAEDTAISEDDDEVVTLIKELLDTRIRPTVQEDGGDIIFKGFDPESGVLQLKLQGSCSDCPSSSITLKSGVQNMMQFYIPEVTSVEEVTDELDD 2402
            +QP H   +     LP       R MFI+ Q+TPNPNSLKFIPG  VLE+ T+D PTP+  +RSPLARQLFRI GV+ +F+G DFITVTK ++ ++ W LLKPDI+A IMDFFA+ +P++T+E P+ + A SE+DDEVV +IKELLDTRIRPTVQEDGGD+I+KGF  E G++QLKLQGSC+ CPSS ITLK+G+QNM+QFYIPEV  VE+V D+  D
Sbjct:   34 KQPLHQFVQRPLFPLPAAFYHPVRYMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTK-ENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGE-AGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYKGF--EDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQVMDDESD 247
The following BLAST results are available for this feature:
BLAST of TCONS_00049927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFU18.713e-8561.93NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
back to top