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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049933 ID=TCONS_00049933|Name=TCONS_00049933|organism=Clytia hemisphaerica|type=transcript|length=2170bp
ttaactttcagTTATAAATAGCGAGTCATCTGTTGTGGCGTGGACTagtt
attacaattttagtcCAGTTTGGAATTTATTTTACTACTGTTTTCTTAAA
GTTGTCTATTTGCCAGTATTCAATGGATGAGTTAGACCGCCCTGGAGATA
TTCCACCTCCCAAGACATTGAAAACAAACGCCCAACACACCATGGGAAAC
CGCCCTCCTGTTGCAATGGATCAAAGCGATGCTATGGATGAAGTAGATCA
AGTAGCGAAACCAACAATTTCACAAGCTGGGGAAAGTGGAACAACTGAGC
GCCCCTCGGTGATCATACCCGCCCCTGGTCAACAACAACCGCCCGACCTT
GAACGTAAAGAGTCCGAAATATTATCCAGTATCGCAATGGACGAAACACC
ACCCGTTTTCCCGACTAANGATATTATCTAGTATCACAATGGACGAAACA
CCACCCGTTTTCCCGACTAAGAAGCCCGAAAAACCGGTTGAAGAAATGCT
TTCAACTATTGACATTCCTTTCGACAATGATAAATTTCAACTAGAGGAGA
TACGACCTGAATCACCTGGCGCTGATGCGACGGACGCCCCAGCTTCGAGC
CAAACTGATGGTCCTTTTAcgtcaacatttttcaaaccaGCGCAACCGAT
CCAGCAATTAGTTCAACATCGTTCAGAACGTAAGAACAGAGAAGGGATTA
CCATCAAACATACCACTTATCACCCTAAACCTTTGGAAAAGAATTCCAAA
ATGAGTGACCACGCATCGAACATTTATTCTGATAGTTTTTACAAAATGGA
CTGTTTTCCACGTGGGAAATTAACATTGATCAATGTTAAACATTTCACAC
GTGCTTCTGGTATGGGAGATTATCCACGTGAGGGTACCAATAGGGATGCA
GAGGGCTTGACCGACTTATTTCTAGATCTTGGTTTTGTCGTTGATCGTTT
TGATAACCCCTCTAAGAAGGAGATCCTAGCCATTGTCAAAGCTGCTGCAA
ATGAGGATTATTCAAAACAAGCGTGTTGCGCATGTGCAATTTTGAGTCAC
GGCGAAGAAGGCATTATTTACGGTAACGACgattttgtgaaaattcgtGA
CATCACCAAAATGTTTCGTACGCGTGGCCTAGCTGGGAAGCCGAAATTTT
TCTTATTCCAAGCGTGTCAAGGCTCAGAGTACATGAATCCGTACGATGCA
GTGGACGGGAAACCCGGTCAAAGATTATCAGAGGAAGAAATGGCATTGAC
GCTACCGTCAGAAGCTGACTTTTTGTACGCTTACTCCACGGTGCCTGGCT
ACTACTCTTGGAGAAATTCTAGACGGGGATCCTGGTTCATGGAAGCATTG
GTTCAAGTTTTCCGTGAAAATGCTCATCGTATGGATGTCATGCGAATGTT
GGTTAGAGTCAATGATATCATTTCATATCGCAAATCGCGTACTGATGAAA
TAAAAACCGATAATAAACGACAGATTGCTTCATTGATcactcaaatgaga
aaagatttCTTCTTGTTCCCACCATACGGACCTTTGAAACATGCTCAATA
AACTCATGTTTTTGTGTAGGTAGTAGCTTCATTGCGTTTTATTATAACTT
TGATGTTGAATTATctcttatattttttaaaaattttgtataTAAAACTG
GCACTCATCTTGGGTTCTAAAGACCCTTTAAAAAATACTCCTGCTCAAGA
TGTTGATATACAATAAATTTGTATCAGTGCAAAGGTCAGTGACTCCGGTA
GTACTCCGGTGACGGAACACAGTTTCCGTGTTCAATGATCTTGAATAAAA
GGAAAACTCGTGAAGGTTTCTGCCTGAAAGAAAACTTGATTAAAGTTGAT
TTCTTCTTCAGTGGGAAAAACTAACAAAATTAACCAGTGGGATAGTCTTC
CATTTTCAACCAAGCCTAGTTTTTTAAACTCAGCTGATGATTGAGAAGAA
TAGGGGTATGgtttttgactgattttatgcgttaagattttttaatattt
gaattTATCATTATTTACCATCATCAAAATTGAGTATAATCGTTTATATT
taggaaagaatttttttgatatttataaaatgtgtattttgacgaaattt
gtaaaaggaaaaatattgattgcttttatatttcattgattgaaaattgt
tttgaaaatttattttgtac Run BLAST on NCBI protein sequence of TCONS_00049933-protein >TCONS_00049933-protein ID=TCONS_00049933-protein|Name=TCONS_00049933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MDETPPVFPTKKPEKPVEEMLSTIDIPFDNDKFQLEEIRPESPGADATDA
PASSQTDGPFTSTFFKPAQPIQQLVQHRSERKNREGITIKHTTYHPKPLE
KNSKMSDHASNIYSDSFYKMDCFPRGKLTLINVKHFTRASGMGDYPREGT
NRDAEGLTDLFLDLGFVVDRFDNPSKKEILAIVKAAANEDYSKQACCACA
ILSHGEEGIIYGNDDFVKIRDITKMFRTRGLAGKPKFFLFQACQGSEYMN
PYDAVDGKPGQRLSEEEMALTLPSEADFLYAYSTVPGYYSWRNSRRGSWF
MEALVQVFRENAHRMDVMRMLVRVNDIISYRKSRTDEIKTDNKRQIASLI
TQMRKDFFLFPPYGPLKHAQ Run BLAST on NCBI transcript from alignment at scaffold_167:1044873..1048520+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049933 ID=TCONS_00049933|Name=TCONS_00049933|organism=Clytia hemisphaerica|type=transcript|length=3648bp|location=Sequence derived from alignment at scaffold_167:1044873..1048520+ (Clytia hemisphaerica)
ttaactttcagTTATAAATAGCGAGTCATCTGTTGTGGCGTGGACTagtt
attacaattttagtcCAGTTTGGAATTTATTTTACTACTGTTTTCTTAAA
GTTGTCTATTTGCCAGGTTAGTCGACCATTATATAGTTATTTAGTTATAT
ACTAATCTCCTTCGAGCCTAATTACCGATGCACTTTCAAATTGTAACTTG
ATTAATTGTTCAATTGCTCAAAATATGTATCGATGAATAATTACAAGAAA
TGTTAGTTAAGATtatttatctatatattaaaCCTCTATTACCCAATTTA
CTAAGGAGATTTACCCCTGTCTCGATAAACCTTACTGATTTTCCATGACA
TACCTTTTATCTAGAACACTTTCAATAATTCAGGCTTCATTTCTTCCAGA
AAATAACATTCTTATTTGTCTTCCCATTTTTCAGTATTCAATGGATGAGT
TAGACCGCCCTGGAGATATTCCACCTCCCAAGACATTGAAAACAAACGCC
CAACACACCATGGGAAACCGCCCTCCTGTTGCAATGGATCAAAGCGATGC
TATGGATGAAGTAGATCAAGTAGCGAAACCAACAATTTCACAAGGTAACT
CATtataaaacactttttttataagaacatcaaatttCTTTGTAACCTTC
GGACGCTCTTTACTTTTTTGGTTatgagcctaaaaatgtccCTAACATGT
TCCTCATTTTATGAGTAGTGTTGTCTATTTTTCTAggaaatcgggtgttt
tggaGTCCTCAGCCAAagcattaaaatgtttttaacttgttcttatcgAG
GGCTgatgttcttgtatagtttgctCATATAAGAAACCGTTTATTTTATC
CCATAACAGCTCATTAGGAAACCAAggtacagtggaacctctaattagcg
gacagcatcggggaaaggggttagtgtccgctaattagaagtgtccgcct
tttagaatcttttgatctcggagctccaattttgaaattaggccatccca
gggtgtcgaaaatacaaaattggggtctaaagtacttatctgcagacact
aggccatagaagaacaagaaaaatgttattaaaacgcaacaatttagttt
ttaactaataaaagaaaatccaGAAATATAACACCAAGATTGAAAATAca
attcgttgaatgggtctcagtttttttttcgatttaggacgtctaattgg
agagctaaaataggggttttggccatttcgtgcgaaaaaaattgtccgct
aatcagagggtccgctaattgagtgtccgccttttagaaacttttttatg
aggatttgactaggaaacgaccggggaaaatgaaattgtccgctaatcag
agggtccgctaattgagtgtccgccttttagaaacttttttatgaggatt
tgactaggaaacgaccggggaaaatgaaattgtccgctaatcagaggtgc
ccgcattttagagtgtccgttaattagaggttttactgtagtTTCATTCT
CTGCTCTGAAGGGATTCGATGAATGTGAAACTTCCTTCGCTCTATATATA
ATTCAGATAGCGCGCTGCATCTACCAGTTAAAATTGGTCTAGTTCTGATT
GCTTGAGCTGAAGGGTGAATTCACgttctttgatattttcatcCAAACCA
TGATATTTTGCGAGCTCTGTATTTGTGGAATGTTGTAACTTGCTGCTATA
AGCAAAGTAATTGTGCGAGAAATCAACCTTAATAAAACCTTGTATTTATT
TTAGCTGGGGAAAGTGGAACAACTGAGCGCCCCTCGGTGATCATACCCGC
CCCTGGTCAACAACAACCGCCCGACCTTGAACGTAAAGAGTCCGAAATAT
TATCCAGTATCGCAATGGACGAAACACCACCCGTTTTCCCGACTAANGAT
ATTATCTAGTATCACAATGGACGAAACACCACCCGTTTTCCCGACTAAGA
AGCCCGAAAAACCGGTTGAAGAAATGCTTTCAACTATTGACATTCCTTTC
GACAATGATAAATTTCAACTAGAGGAGATACGACCTGAATCACCTGGCGC
TGATGCGACGGACGCCCCAGCTTCGAGCCAAACTGATGGTCCTTTTAcgt
caacatttttcaaaccaGCGCAACCGATCCAGCAATTAGTTCAACATCGT
TCAGAACGTAAGAACAGAGAAGGGATTACCATCAAACATACCACTTATCA
CCCTAAACCTTTGGAAAAGAATTCCAAAATGAGTGACCACGCATCGAACA
TTTATTCTGATAGTTTTTACAAAATGGACTGTTTTCCACGTGGGAAATTA
ACATTGATCAATGTTAAACATTTCACACGTGCTTCTGGTATGGGAGATTA
TCCACGTGAGGGTACCAATAGGGATGCAGAGGGCTTGACCGACTTATTTC
TAGATCTTGGTTTTGTCGTTGATCGTTTTGATAACCCCTCTAAGAAGGAG
ATCCTAGCCATTGTCAAAGCTGCTGCAAATGAGGATTATTCAAAACAAGC
GTGTTGCGCATGTGCAATTTTGAGTCACGGCGAAGAAGGCATTATTTACG
GTAACGACgattttgtgaaaattcgtGACATCACCAAAATGTTTCGTACG
CGTGGCCTAGCTGGGAAGCCGAAATTTTTCTTATTCCAAGCGTGTCAAGG
CTCAGAGTACATGAATCCGTACGATGCAGTGGACGGGAAACCCGGTCAAA
GATTATCAGAGGAAGAAATGGCATTGACGCTACCGTCAGAAGCTGACTTT
TTGTACGCTTACTCCACGGTGCCTGGCTACTACTCTTGGAGAAATTCTAG
ACGGGGATCCTGGTTCATGGAAGCATTGGTTCAAGTTTTCCGTGAAAATG
CTCATCGTATGGATGTCATGCGAATGTTGGTTAGAGTCAATGATATCATT
TCATATCGCAAATCGCGTACTGATGAAATAAAAACCGATAATAAACGACA
GATTGCTTCATTGATcactcaaatgagaaaagatttCTTCTTGTTCCCAC
CATACGGACCTTTGAAACATGCTCAATAAACTCATGTTTTTGTGTAGGTA
GTAGCTTCATTGCGTTTTATTATAACTTTGATGTTGAATTATctcttata
ttttttaaaaattttgtataTAAAACTGGCACTCATCTTGGGTTCTAAAG
ACCCTTTAAAAAATACTCCTGCTCAAGATGTTGATATACAATAAATTTGT
ATCAGTGCAAAGGTCAGTGACTCCGGTAGTACTCCGGTGACGGAACACAG
TTTCCGTGTTCAATGATCTTGAATAAAAGGAAAACTCGTGAAGGTTTCTG
CCTGAAAGAAAACTTGATTAAAGTTGATTTCTTCTTCAGTGGGAAAAACT
AACAAAATTAACCAGTGGGATAGTCTTCCATTTTCAACCAAGCCTAGTTT
TTTAAACTCAGCTGATGATTGAGAAGAATAGGGGTATGgtttttgactga
ttttatgcgttaagattttttaatatttgaattTATCATTATTTACCATC
ATCAAAATTGAGTATAATCGTTTATATTtaggaaagaatttttttgatat
ttataaaatgtgtattttgacgaaatttgtaaaaggaaaaatattgattg
cttttatatttcattgattgaaaattgttttgaaaatttattttgtac Coding sequence (CDS) from alignment at scaffold_167:1044873..1048520+ >TCONS_00049933 ID=TCONS_00049933|Name=TCONS_00049933|organism=Clytia hemisphaerica|type=CDS|length=1113bp|location=Sequence derived from alignment at scaffold_167:1044873..1048520+ (Clytia hemisphaerica)
ATGGACGAAACACCACCCGTTTTCCCGACTAAGAAGCCCGAAAAACCGGT
TGAAGAAATGCTTTCAACTATTGACATTCCTTTCGACAATGATAAATTTC
AACTAGAGGAGATACGACCTGAATCACCTGGCGCTGATGCGACGGACGCC
CCAGCTTCGAGCCAAACTGATGGTCCTTTTAcgtcaacatttttcaaacc
aGCGCAACCGATCCAGCAATTAGTTCAACATCGTTCAGAACGTAAGAACA
GAGAAGGGATTACCATCAAACATACCACTTATCACCCTAAACCTTTGGAA
AAGAATTCCAAAATGAGTGACCACGCATCGAACATTTATTCTGATAGTTT
TTACAAAATGGACTGTTTTCCACGTGGGAAATTAACATTGATCAATGTTA
AACATTTCACACGTGCTTCTGGTATGGGAGATTATCCACGTGAGGGTACC
AATAGGGATGCAGAGGGCTTGACCGACTTATTTCTAGATCTTGGTTTTGT
CGTTGATCGTTTTGATAACCCCTCTAAGAAGGAGATCCTAGCCATTGTCA
AAGCTGCTGCAAATGAGGATTATTCAAAACAAGCGTGTTGCGCATGTGCA
ATTTTGAGTCACGGCGAAGAAGGCATTATTTACGGTAACGACgattttgt
gaaaattcgtGACATCACCAAAATGTTTCGTACGCGTGGCCTAGCTGGGA
AGCCGAAATTTTTCTTATTCCAAGCGTGTCAAGGCTCAGAGTACATGAAT
CCGTACGATGCAGTGGACGGGAAACCCGGTCAAAGATTATCAGAGGAAGA
AATGGCATTGACGCTACCGTCAGAAGCTGACTTTTTGTACGCTTACTCCA
CGGTGCCTGGCTACTACTCTTGGAGAAATTCTAGACGGGGATCCTGGTTC
ATGGAAGCATTGGTTCAAGTTTTCCGTGAAAATGCTCATCGTATGGATGT
CATGCGAATGTTGGTTAGAGTCAATGATATCATTTCATATCGCAAATCGC
GTACTGATGAAATAAAAACCGATAATAAACGACAGATTGCTTCATTGATc
actcaaatgagaaaagatttCTTCTTGTTCCCACCATACGGACCTTTGAA
ACATGCTCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049933-exon-scaffold_167-1491911889:1044873..1044988 | TCONS_00049933-exon-scaffold_167-1491911889:1044873..1044988 | Clytia hemisphaerica | exon |
| TCONS_00049933-exon-scaffold_167-1510915933:1044873..1044988 | TCONS_00049933-exon-scaffold_167-1510915933:1044873..1044988 | Clytia hemisphaerica | exon |
| TCONS_00049933-exon-scaffold_167-1575043694:1044873..1044988 | TCONS_00049933-exon-scaffold_167-1575043694:1044873..1044988 | Clytia hemisphaerica | exon |
| TCONS_00049933-exon-scaffold_167-1491911889:1045307..1045466 | TCONS_00049933-exon-scaffold_167-1491911889:1045307..1045466 | Clytia hemisphaerica | exon |
| TCONS_00049933-exon-scaffold_167-1510915933:1045307..1045466 | TCONS_00049933-exon-scaffold_167-1510915933:1045307..1045466 | Clytia hemisphaerica | exon |
| TCONS_00049933-exon-scaffold_167-1575043694:1045307..1045466 | TCONS_00049933-exon-scaffold_167-1575043694:1045307..1045466 | Clytia hemisphaerica | exon |
| TCONS_00049933-exon-scaffold_167-1491911889:1046627..1048520 | TCONS_00049933-exon-scaffold_167-1491911889:1046627..1048520 | Clytia hemisphaerica | exon |
| TCONS_00049933-exon-scaffold_167-1510915933:1046627..1048520 | TCONS_00049933-exon-scaffold_167-1510915933:1046627..1048520 | Clytia hemisphaerica | exon |
| TCONS_00049933-exon-scaffold_167-1575043694:1046627..1048520 | TCONS_00049933-exon-scaffold_167-1575043694:1046627..1048520 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1044873..1048520 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008234 | cysteine-type peptidase activity |
| GO:0004197 | cysteine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004197 |
cysteine-type endopeptidase activity |
| molecular_function |
GO:0008234 |
cysteine-type peptidase activity |
Blast
BLAST of TCONS_00049933 vs. Swiss-Prot (Human)
Match: CASP7 (Caspase-7 OS=Homo sapiens GN=CASP7 PE=1 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 6.144e-53 Identity = 97/246 (39.43%), Postives = 150/246 (60.98%), Query Frame = 1
Query: 790 YKMDCFPRGKLTLINVKHFTRASGMGDYPREGTNRDAEGLTDLFLDLGFVVDRFDNPSKKEILAIVKAAANEDYSKQACCACAILSHGEEGIIYGNDDFVKIRDITKMFR---TRGLAGKPKFFLFQACQGSEYMNPYDAVDGKPGQRLSEEEMALTLPSEADFLYAYSTVPGYYSWRNSRRGSWFMEALVQVFRENAHRMDVMRMLVRVNDIIS-YRKSRTDEIKTDNKRQIASLITQMRKDFFL 1515
Y M+ GK +IN K+F + +GMG R GT++DAE L F LGF V +++ S ++ ++K A+ ED++ AC AC +LSHGEE +IYG D I+D+T FR + L KPK F QAC+G+E + A G ++ +P EADFL+AYSTVPGYYSWR+ RGSWF++AL + E+ +++M++L RVND ++ + +S++D+ K+QI +++ + K+ +
Sbjct: 60 YNMNFEKLGKCIIINNKNFDKVTGMG--VRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPIND--TDANPRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTKELYF 301
The following BLAST results are available for this feature:
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