|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050180 ID=TCONS_00050180|Name=TCONS_00050180|organism=Clytia hemisphaerica|type=transcript|length=1628bp
ttgatattctggttgctgcacgttcgcaatcgGTCATTTTAAGTCtcatt
ttaacttttcaagttttaattaattgttgttgcaaatacatcctgtagat
gactgatgttgttttttctaaaagcttgatttcctagtgcgACTAACTGA
CATTAGACAAAGTTACCCTAATATTGATAAATTGAAAGGAAGCCCTGACT
GCAATAAGAGATTGGAAAAACTGcctccaaaaaaaaattcaaaaaacacc
TTATCTTAGACGGTCGTGGGTAGATTGTAAATGACGCTCCGcgatttttt
ctactttctctATTTCCTATCTTCCATTCTACTTTCTGATGTTATTCtga
gtttttgaaatattgtaaGTTATATTCTGACTTTTTTAACCTATTTCTGA
AATATACTCCCTTACCTCGGCTCGAACCACTAAATGCAAACAACCTTGGT
TTCCAAACCCGACGCCTAACCGGTTGCGCCAGCGAGACACGGCAGAAATA
AACGAACGAATACTTCTAGGGTGTAATTTAAAGACTCTATATATATAATA
GCTCCCAGCCCTATTGGTGACCCTCGAGTCCAACCCTCTGACCCTAACTA
ATAATAACAGAACCCCCGTCTAAATGGAACCACCATACCCCGGTCTAAAC
GTTTCCGcagattgaaaaaatttttgccttGTTAGTCATTTACATTCTAC
CCGACACCAGCTTAGACACACCTTCCTCAAAACTGTTCCAGACGAACCAC
TGCcagtctaagcttaaactcctatatcaggattagaaactaggctagtc
ttacctcttttatctttctctttacaacaatacaatgctgacaagttgac
acaacacattgtgTACATTCTGGTACATTGACAAGTACCCCATAGTTGCC
AACTTATGAGAATGGAAATGCGGGACAACCAGCAAGCGGAGCGAGCAAGA
AAGATTGAGCTGGGGGTTTTGGGGGCGCTCTCAACcccctgaaaattttt
ttaggcCTGAAATGACGTAGGAATGGTTAAAAACAATAtaaaagtagaaa
taaagcaaaattttcaaccagATAAATATTAGGTGTACTGGACAGTTCAT
GTAGTACTATTAAATCTCTGTCAAACGCGTATCCGGTGTATTGAATACGG
ACGCACGCAATTGGACGAACTGTTACAGAGCGCAGAGAAAAAACGAGGAA
GTGAGTTTGTGCTTGTGCAAACATATTTTTAGTagcatttctatattttt
tccgGAGTTCTACGAATTTCTGAGTTTTCTCGAAAAAGCGGGACATCTAA
GGTATGCGGGCACGACCCTGCCGATTCACCGGACATTCCGGTGTTGTTTT
TCAAAAGTGTGCACCGGActacaccggactgtccggtgcgCACTTTTCTA
GCGGGCGTTTCGTGGTACTGCGCGGTCTGCACGGCCTTTTCTTAAAATGA
ATATCGCTAACACGTGGTCACGAGCACTGTTTTCTAAAGTCCCGAAAAGC
TGGATATTTTAGCTGAGTAATTACAACCAAGGAACTCCGGCGAGAAAGGT
GAAACTTCGTGTTTCCAAAGCTTAGTTTTTCTGGAAATTACCACTTCTGG
GCATTTGCATGTTGCGCAGTGTTTTGTG Run BLAST on NCBI transcript from alignment at scaffold_167:1173748..1175375 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050180 ID=TCONS_00050180|Name=TCONS_00050180|organism=Clytia hemisphaerica|type=transcript|length=1628bp|location=Sequence derived from alignment at scaffold_167:1173748..1175375 (Clytia hemisphaerica)
CACAAAACACTGCGCAACATGCAAATGCCCAGAAGTGGTAATTTCCAGAA
AAACTAAGCTTTGGAAACACGAAGTTTCACCTTTCTCGCCGGAGTTCCTT
GGTTGTAATTACTCAGCTAAAATATCCAGCTTTTCGGGACTTTAGAAAAC
AGTGCTCGTGACCACGTGTTAGCGATATTCATTTTAAGAAAAGGCCGTGC
AGACCGCGCAGTACCACGAAACGCCCGCTAGAAAAGTGcgcaccggacag
tccggtgtagTCCGGTGCACACTTTTGAAAAACAACACCGGAATGTCCGG
TGAATCGGCAGGGTCGTGCCCGCATACCTTAGATGTCCCGCTTTTTCGAG
AAAACTCAGAAATTCGTAGAACTCcggaaaaaatatagaaatgctACTAA
AAATATGTTTGCACAAGCACAAACTCACTTCCTCGTTTTTTCTCTGCGCT
CTGTAACAGTTCGTCCAATTGCGTGCGTCCGTATTCAATACACCGGATAC
GCGTTTGACAGAGATTTAATAGTACTACATGAACTGTCCAGTACACCTAA
TATTTATctggttgaaaattttgctttatttctacttttaTATTGTTTTT
AACCATTCCTACGTCATTTCAGgcctaaaaaaattttcaggggGTTGAGA
GCGCCCCCAAAACCCCCAGCTCAATCTTTCTTGCTCGCTCCGCTTGCTGG
TTGTCCCGCATTTCCATTCTCATAAGTTGGCAACTATGGGGTACTTGTCA
ATGTACCAGAATGTAcacaatgtgttgtgtcaacttgtcagcattgtatt
gttgtaaagagaaagataaaagaggtaagactagcctagtttctaatcct
gatataggagtttaagcttagactgGCAGTGGTTCGTCTGGAACAGTTTT
GAGGAAGGTGTGTCTAAGCTGGTGTCGGGTAGAATGTAAATGACTAACaa
ggcaaaaattttttcaatctgCGGAAACGTTTAGACCGGGGTATGGTGGT
TCCATTTAGACGGGGGTTCTGTTATTATTAGTTAGGGTCAGAGGGTTGGA
CTCGAGGGTCACCAATAGGGCTGGGAGCTATTATATATATAGAGTCTTTA
AATTACACCCTAGAAGTATTCGTTCGTTTATTTCTGCCGTGTCTCGCTGG
CGCAACCGGTTAGGCGTCGGGTTTGGAAACCAAGGTTGTTTGCATTTAGT
GGTTCGAGCCGAGGTAAGGGAGTATATTTCAGAAATAGGTTAAAAAAGTC
AGAATATAACttacaatatttcaaaaactcaGAATAACATCAGAAAGTAG
AATGGAAGATAGGAAATagagaaagtagaaaaaatcgCGGAGCGTCATTT
ACAATCTACCCACGACCGTCTAAGATAAggtgttttttgaattttttttt
ggaggCAGTTTTTCCAATCTCTTATTGCAGTCAGGGCTTCCTTTCAATTT
ATCAATATTAGGGTAACTTTGTCTAATGTCAGTTAGTcgcactaggaaat
caagcttttagaaaaaacaacatcagtcatctacaggatgtatttgcaac
aacaattaattaaaacttgaaaagttaaaatgaGACTTAAAATGACcgat
tgcgaacgtgcagcaaccagaatatcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050180-exon-scaffold_167-1491911889:1173748..1175375 | TCONS_00050180-exon-scaffold_167-1491911889:1173748..1175375 | Clytia hemisphaerica | exon |
| TCONS_00050180-exon-scaffold_167-1510915933:1173748..1175375 | TCONS_00050180-exon-scaffold_167-1510915933:1173748..1175375 | Clytia hemisphaerica | exon |
| TCONS_00050180-exon-scaffold_167-1575043694:1173748..1175375 | TCONS_00050180-exon-scaffold_167-1575043694:1173748..1175375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1173748..1175375 . |
Blast
The following BLAST results are available for this feature:
|
