TCONS_00050100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050100
Unique NameTCONS_00050100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050100 ID=TCONS_00050100|Name=TCONS_00050100|organism=Clytia hemisphaerica|type=transcript|length=1463bp
ATTTTGAAAaggagtttaaaatttgaatagaGCAACAAAACGAAAAAATG
GCGATCTGTAGTTTATTCTTAGCGGGTTTGTTGATATCTTTCATCCACGG
CGATGTGACAATAAAGGAAACCGAAACACTTGGATATAATTTAAAGGACA
GCTCTTCAAGTAATTCAAGATGTTCTGTGTGTCGCCACGGTCGTGATGGT
TTGAATGGGCGTGATGGTGTGAACGGGCGTGATGGTGTAAATGGGATCGA
CGGGTGCGATGGAATGCCCGGTAAACAAGGAGTGCAAGGACCGCCGGGTA
AAGACGGTTTGCAAGGATCAACCGGAAAGGATGGAAAAGATCTCTTGGCA
TCTCAGTGGAAAGATTGCGTATGGAATCACATCAATGATGACAAAGATAA
AGGTCTTGTCAGGGAATGCAGTTTTAAGAAGAAATATGCCACAACGTATC
TCCGAATCTCAGTTTCGTCTAACGGAAGAGTGTACGGGTGTTCGGGATGT
TGTAAACGTTGGTTCGTAACCATTGACAACAAAGAATGTGCACCGGCCCC
AATCGATTTTTCACATTACCGAGCTGACGCAAAAACAGACGACGATGTTG
GACAATTTCTCTTAAAAGGCAACTGTCGTATTCCGAAAACTGGTTCTGTG
AAAATCGGATTCCATATCGGAAATTGCCACGGGTTAGGAGATGCAGATGG
TTACACGGGACATAAGCAAGTTACAAGAATAATGATCGAAGAAATCGCAC
CTCCTCAGGCTTGAATCAAATCATCTTTATAATCTTTCTATTAATCTTAA
ATTTAAAAAGctgaaatttattgataaaattggaacatattttttcatga
cTCCAGGATTATAACACAACAATAATATTTTGCCACGTTTCTCTTGAAAT
CAGAACGCCTAAAGTCACAATGCATTcggtttttcttcttttctatcTCT
TATCCTCAATTTTAATACCTTAACTGGCTGTCAGAGAACAAATTTCACCC
CTTCCAACTATATACGCCTTCGAGGTGACTTTTAGCCATTGAaggataaa
aaaacaaaacgaaaTGACTTTTAACGATCGGATTTTTATAAGAGTATCAC
CTTTTATTGCTTCATCACCGTACTTAAAATATTATACCGTGTGCGCCAAA
AAAGAGTTTCGAGGTTCttttaaagaaccattcctattttattggaaaga
agaaagagcactttcaaaaagtaaaatatttattaaattgggcataactt
tcgatctaatgaatcaaatttaataaatgacccatcaaaatttaagtata
tctttcttcttttcgaTGGTAAAGAaatggttctttaaaaaattttagat
tacgagaaaattagttttaaagaaaacaagcaacatgctgaacggaccta
cctggtgatcaaaatcagataaaaataggacaaatagcaagagagtaaga
aagtgtaatgagc
Run BLAST on NCBI

protein sequence of TCONS_00050100-protein

>TCONS_00050100-protein ID=TCONS_00050100-protein|Name=TCONS_00050100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MAICSLFLAGLLISFIHGDVTIKETETLGYNLKDSSSSNSRCSVCRHGRD
GLNGRDGVNGRDGVNGIDGCDGMPGKQGVQGPPGKDGLQGSTGKDGKDLL
ASQWKDCVWNHINDDKDKGLVRECSFKKKYATTYLRISVSSNGRVYGCSG
CCKRWFVTIDNKECAPAPIDFSHYRADAKTDDDVGQFLLKGNCRIPKTGS
VKIGFHIGNCHGLGDADGYTGHKQVTRIMIEEIAPPQA
Run BLAST on NCBI

transcript from alignment at scaffold_167:1196213..1203455-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050100 ID=TCONS_00050100|Name=TCONS_00050100|organism=Clytia hemisphaerica|type=transcript|length=7243bp|location=Sequence derived from alignment at scaffold_167:1196213..1203455- (Clytia hemisphaerica)
ATTTTGAAAAGGAGTTTAAAATTTGAATAGAGCAACAAAACGAAAAAATG
GCGATCTGTAGTTTATTCTTAGCGGGTTTGTTGATATCTTTCATCCACGG
CGATGTGACAATAAAGGAAACCGAAACACTTGGATATAATTTAAAGGACA
GCTCTTCAAGTGTAAGTTTTAACTACCTCATATCGTGAACATTAATCATA
ATAGTCGAACGTGCGCAACGCACTGGGCTCAACTTCAGTGGCTTCAAATC
TTTCATAGGCCCAATTGTAGACCCCCAGATATTCACCCAATGAACAAGTG
TGCCAAATTTCAACCAAATCCGATCATTTTGGAGGCCTGTAGACTGCTCC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGGCAAAAAACTCGTTCCCAGGCCCCAAAAATCAAAATTTTTGAAAA
ATGCAAAAAGCACCCCCAGATATTCACCCAAGGAACAAGTGTGCAAAATT
TCAGCCAAATCGAACAGTTTTTGAAGTCTCCAGGCTGCCCCAAAGTTTTA
GCCTCGTTTTGGCGAAAAACTCGTGCCTAGGCCCCAAAAATCAAAATTTC
CAAAAAATGAAAAAAACACCCCCAGATATTCACCCAAGGAACAAGTGTGC
AAAATTTCAGCCAAATCGAACAATTTTTGAAAAATGAAAAAAACACCCCC
AGATAATCCCCCAAGGAACAAGTGTGCCAAATTTCAGCCAAATCAAACAA
TTTTTGAAGTCTCCAGGCTGCCCCAAAGTTTTGGGACATACACACAGACA
GACACACAGACACACATTGTCAGATTCTAACTCAACTGAAGTTGAGAATA
AAATGTGATGTAGTAGCTTTCAGGAATTTGAGACCTACCTTATTACACGC
AAAATAAGTAGACATGTAATTAAGACGAATCAAAAAATTTCGTGTTAATC
AAGACTACTTCAATTAAAACCAGCCGTGGTGTCTTTGAAAAAGCAAATTC
GTGTTATTTTTTTGTGTGTTATTTTCAAAACCGTTAATTATGTGTCTACT
TATTGAATATTTCCCCGCTATAAGGGGAAATATTAGTTAAAAAGGCATTT
CTCCGATCCTTGGCTACTTACGCCCTTTTTGCGCCCTTAAAGGGGGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGAGATTTGTTTACCGAGTGACCCCAAAACAAA
GTCTTTAATTCTTGGTTCTTACATTCATGAGGTCAGAGGTTTTGTGGATT
TTCTAAACTTTTGAAACTGATTGTTTTGCTACGTGTTTTGGTTGTTTTCC
TGACTAAAGACACTTTTGAATGTGTGATTGTTTTCTCTGACTAGAGATAC
TGTGAGCGTGTATTTAATAAACGTATTGCATCTTGGCTTTTAATGCAGGA
ATTGTCAGTCAAACCCACTGGGTGAAAACATACGATCTGACGAAAATGCA
ATCTCGAAATCGTAAGGACCGTGTTCGTCTATAAGGACTGGGGATGACAA
CAAAGTTGCGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCAAAAATATAAACCTTGTCTGCTTGAGCAGATTGATTTACATT
CTCGACAAAGAGGTCGATAAAACAAACCTTGTCTGCTTGTTGAGCAGATT
GATTATTTACACTATCGACAAGTAAGTCGATAGAAAAACTACTGTCCGAT
ATTTCGTACACGGCAAAAATATAAACCTTGTCTGCTTGAGCAGATTGATT
TACATTCTCGACAAAGAGGTCGATAAAACAAACCTTGTCTGCTTCTTGAG
CAGATTGATTATTTACACTCTCGACAAAGAAGTCGATAGAAAAACTATTG
TCCGATATTTCGTACACGGCAAAAATATAAACCTTGTCTGCTTGAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT
TTGAGTTAAGCCTAAGCTTGTTCTTATTTTTTCTATTGTCTAGAATAATA
GACCTATTGTTTCAGTCTAAGCCTGATTGTTCTTATAAAAAAAGAGTATG
CTGTTAACCCTTTCAGTACCGAGCCCTTTTTTCTATTTTTTTAGCCTACA
CTTTTTTTATAAGCGTATCGTAATGCCCGAAGTTTTTATCATCTTATCCT
GGAGATTACTTTTTTAAATGTACAGTAGAGTCTCCATAACTCGAACCTCT
ATTACTCGAACGTCTCCTTAACTCGAACAAATTCGTTGGCAGCATGAAAA
TCTCCTAATAAACTCATATAAAAAAACCTCCATATATCGAATGTTCCCCT
TTTTTGGCTCCATAACTCCAACTTTGTTTTCCTTCCCTGAACTTGAAAAA
TATAAGCAATCTGATTGGCTAAGAGACAAACCATATTTATTTTTTGAAAA
TTTTGATTTTTGGGCCTGGGGTCGAGTTTTCATTTTTTTCAAAATCTTAA
ACTGCTACAATCAGACCTTTAAATAATAAATAATTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCGAAAGTT
ACTGAAGTACGGCGCATTTTTAAGGCTTCACTTTTTCTTGCCTGAGAAAG
GTTAGAGATTGAACTCTAGCCCTTCGGGCTTTAAACTCAATCTGCAAGTG
TAAGGGGGAAATATTTAGTCGCATTTGTGCGAATCTTGTTTTCGTGTGAA
AAGGTACTTTATCTGATTCAATAGTCATAATCTTCGCGAGCAAAAAATTC
AGGAATATTAATTTATGTCTAGAATTCAAGATGTTCTGTGTGTCGCCACG
GTCGTGATGGTTTGAATGGGCGTGATGGTGTGAACGGGCGTGATGGTGTA
AATGGGATCGACGGGTGCGATGGAATGCCCGGTAAACAAGGAGTGCAAGG
TAATAATATTTTCTGTGAGCTAATCCCGAGACAAGCGATAAGGTCAAAGG
TTCAAGCGCGAGTTTGTAAGTTTGAATTTTTCTGAAAATGTTTCCTGATG
TCAACAGAAAACGACCAAAATGTAATTTTTTTGCCCCATTTTCTTCATCT
CATTTTCGGGCTAAAACTGATGGAAGCATTGAATATTTGATTTTCAGACT
TGGAAAAAAATCGAGAGACCCTTAAAACTACCGAGAAAGGGAGATTTTTT
CTGTCAACTCTATGCTTTATTAGGAGCGTAATATCTAAAATTTGCCCAGA
TTTAAGAGGTACCCTACAAAATGACACAACACAATTCAACCTCGGCCGCT
GCGGTCTATTGCTTTCTATTCAGGGAACGATTGATTTCTGACTTGTTTAG
GTGTCAAAGCCAACTTTTTTGCCCTCCATTAATTCTAATTTTTAGGTAAG
ACAGGAAGTCGGCAGGAAATTAAATAAAATCTTTGCTTAAGAAAGTTTCT
AATAAACTTTAGCATTGATGCAAAATAAAAAACAATGTACTTTTTGCCGA
CCTTAATTCAAAAATAGAATAGGCAAGGCAGAAAGTCGGCTGTCTAAACT
AGAGCTTAAGCTTAGAGTAAAGTATAAACGTATTTTTTATTAAGGACCGC
CGGGTAAAGACGGTTTGCAAGGATCAACCGGAAAGGATGGAAAAGATCTC
TTGGCATCTCAGTGGAAAGATTGCGTATGGAATCACATCAATGATGACAA
AGATAAAGGTCTTGTCAGGGTACAAATTTTGTTTACTATTGAAAGAGCAT
CGCCCTTATCTCACTACAGCCTAAACTTAATGGGTATTCGTGCCTCCCCA
TCCTCATTGAGTGAAAATACAACAACAAAATGTGTACAAAACGTCTTTAA
GTTTTACAACTATGAGTCTCCAGGCTAACCAAAAGTTTTGAATGTATAAC
AGAAGGTACACATTTTTTAGCTCAAATAAAGTTTTATACCCGATTGAAGA
TATTTATTGTTCCACATTATAGCCAATTTCCTTGATACAGCACACTTTTA
GAAAAAATAAAGAAACATGAATCTTTTGTTATCTCTTTTAAAGGAATGCA
GTTTTAAGAAGAAATATGCCACAACGTATCTCCGAATCTCAGTTTCGTCT
AACGGAAGAGTGTACGGGTGTTCGGGATGTTGTAAACGTTGGTTCGTAAC
CATTGACAACAAAGAATGTGCACCGGCCCCAATCGATTTTTCACATTACC
GAGCTGACGCAAAAACAGACGACGATGTTGGACAATTTCTCTTAAAAGGC
AACTGTCGTATTCCGAAAACTGGTTCTGTGAAAATCGGATTCCATATCGG
AAATTGCCACGGGTTAGGAGATGCAGATGGTTACACGGGACATAAGCAAG
TTACAAGAATAATGATCGAAGAAATCGCACCTCCTCAGGCTTGAATCAAA
TCATCTTTATAATCTTTCTATTAATCTTAAATTTAAAAAGCTGAAATTTA
TTGATAAAATTGGAACATATTTTTTCATGACTCCAGGATTATAACACAAC
AATAATATTTTGCCACGTTTCTCTTGAAATCAGAACGCCTAAAGTCACAA
TGCATTCGGTTTTTCTTCTTTTCTATCTCTTATCCTCAATTTTAATACCT
TAACTGGCTGTCAGAGAACAAATTTCACCCCTTCCAACTATATACGCCTT
CGAGGTGACTTTTAGCCATTGAAGGATAAAAAAACAAAACGAAATGACTT
TTAACGATCGGATTTTTATAAGAGTATCACCTTTTATTGCTTCATCACCG
TACTTAAAATATTATACCGTGTGCGCCAAAAAAGAGTTTCGAGGTTCTTT
TAAAGAACCATTCCTATTTTATTGGAAAGAAGAAAGAGCACTTTCAAAAA
GTAAAATATTTATTAAATTGGGCATAACTTTCGATCTAATGAATCAAATT
TAATAAATGACCCATCAAAATTTAAGTATATCTTTCTTCTTTTCGATGGT
AAAGAAATGGTTCTTTAAAAAATTTTAGATTACGAGAAAATTAGTTTTAA
AGAAAACAAGCAACATGCTGAACGGACCTACCTGGTGATCAAAATCAGAT
AAAAATAGGACAAATAGCAAGAGAGTAAGAAAGTGTAATGAGC

Coding sequence (CDS) from alignment at scaffold_167:1196213..1203455-

>TCONS_00050100 ID=TCONS_00050100|Name=TCONS_00050100|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at scaffold_167:1196213..1203455- (Clytia hemisphaerica)
GAATGCAGTTTTAAGAAGAAATATGCCACAACGTATCTCCGAATCTCAGT
TTCGTCTAACGGAAGAGTGTACGGGTGTTCGGGATGTTGTAAACGTTGGT
TCGTAACCATTGACAACAAAGAATGTGCACCGGCCCCAATCGATTTTTCA
CATTACCGAGCTGACGCAAAAACAGACGACGATGTTGGACAATTTCTCTT
AAAAGGCAACTGTCGTATTCCGAAAACTGGTTCTGTGAAAATCGGATTCC
ATATCGGAAATTGCCACGGGTTAGGAGATGCAGATGGTTACACGGGACAT
AAGCAAGTTACAAGAATAATGATCGAAGAAATCGCACCTCCTCAGGCTTG
AGACCGCCGGGTAAAGACGGTTTGCAAGGATCAACCGGAAAGGATGGAAA
AGATCTCTTGGCATCTCAGTGGAAAGATTGCGTATGGAATCACATCAATG
ATGACAAAGATAAAGGTCTTGTCAGGAATTCAAGATGTTCTGTGTGTCGC
CACGGTCGTGATGGTTTGAATGGGCGTGATGGTGTGAACGGGCGTGATGG
TGTAAATGGGATCGACGGGTGCGATGGAATGCCCGGTAAACAAGGAGTGC
AAGATGGCGATCTGTAGTTTATTCTTAGCGGGTTTGTTGATATCTTTCAT
CCACGGCGATGTGACAATAAAGGAAACCGAAACACTTGGATATAATTTAA
AGGACAGCTCTTCAAGTGAATGCAGTTTTAAGAAGAAATATGCCACAACG
TATCTCCGAATCTCAGTTTCGTCTAACGGAAGAGTGTACGGGTGTTCGGG
ATGTTGTAAACGTTGGTTCGTAACCATTGACAACAAAGAATGTGCACCGG
CCCCAATCGATTTTTCACATTACCGAGCTGACGCAAAAACAGACGACGAT
GTTGGACAATTTCTCTTAAAAGGCAACTGTCGTATTCCGAAAACTGGTTC
TGTGAAAATCGGATTCCATATCGGAAATTGCCACGGGTTAGGAGATGCAG
ATGGTTACACGGGACATAAGCAAGTTACAAGAATAATGATCGAAGAAATC
GCACCTCCTCAGGCTTGAGACCGCCGGGTAAAGACGGTTTGCAAGGATCA
ACCGGAAAGGATGGAAAAGATCTCTTGGCATCTCAGTGGAAAGATTGCGT
ATGGAATCACATCAATGATGACAAAGATAAAGGTCTTGTCAGGAATTCAA
GATGTTCTGTGTGTCGCCACGGTCGTGATGGTTTGAATGGGCGTGATGGT
GTGAACGGGCGTGATGGTGTAAATGGGATCGACGGGTGCGATGGAATGCC
CGGTAAACAAGGAGTGCAAGATGGCGATCTGTAGTTTATTCTTAGCGGGT
TTGTTGATATCTTTCATCCACGGCGATGTGACAATAAAGGAAACCGAAAC
ACTTGGATATAATTTAAAGGACAGCTCTTCAAGTGAATGCAGTTTTAAGA
AGAAATATGCCACAACGTATCTCCGAATCTCAGTTTCGTCTAACGGAAGA
GTGTACGGGTGTTCGGGATGTTGTAAACGTTGGTTCGTAACCATTGACAA
CAAAGAATGTGCACCGGCCCCAATCGATTTTTCACATTACCGAGCTGACG
CAAAAACAGACGACGATGTTGGACAATTTCTCTTAAAAGGCAACTGTCGT
ATTCCGAAAACTGGTTCTGTGAAAATCGGATTCCATATCGGAAATTGCCA
CGGGTTAGGAGATGCAGATGGTTACACGGGACATAAGCAAGTTACAAGAA
TAATGATCGAAGAAATCGCACCTCCTCAGGCTTGAGACCGCCGGGTAAAG
ACGGTTTGCAAGGATCAACCGGAAAGGATGGAAAAGATCTCTTGGCATCT
CAGTGGAAAGATTGCGTATGGAATCACATCAATGATGACAAAGATAAAGG
TCTTGTCAGGAATTCAAGATGTTCTGTGTGTCGCCACGGTCGTGATGGTT
TGAATGGGCGTGATGGTGTGAACGGGCGTGATGGTGTAAATGGGATCGAC
GGGTGCGATGGAATGCCCGGTAAACAAGGAGTGCAAGATGGCGATCTGTA
GTTTATTCTTAGCGGGTTTGTTGATATCTTTCATCCACGGCGATGTGACA
ATAAAGGAAACCGAAACACTTGGATATAATTTAAAGGACAGCTCTTCAAG
TGAATGCAGTTTTAAGAAGAAATATGCCACAACGTATCTCCGAATCTCAG
TTTCGTCTAACGGAAGAGTGTACGGGTGTTCGGGATGTTGTAAACGTTGG
TTCGTAACCATTGACAACAAAGAATGTGCACCGGCCCCAATCGATTTTTC
ACATTACCGAGCTGACGCAAAAACAGACGACGATGTTGGACAATTTCTCT
TAAAAGGCAACTGTCGTATTCCGAAAACTGGTTCTGTGAAAATCGGATTC
CATATCGGAAATTGCCACGGGTTAGGAGATGCAGATGGTTACACGGGACA
TAAGCAAGTTACAAGAATAATGATCGAAGAAATCGCACCTCCTCAGGCTT
GAGACCGCCGGGTAAAGACGGTTTGCAAGGATCAACCGGAAAGGATGGAA
AAGATCTCTTGGCATCTCAGTGGAAAGATTGCGTATGGAATCACATCAAT
GATGACAAAGATAAAGGTCTTGTCAGGAATTCAAGATGTTCTGTGTGTCG
CCACGGTCGTGATGGTTTGAATGGGCGTGATGGTGTGAACGGGCGTGATG
GTGTAAATGGGATCGACGGGTGCGATGGAATGCCCGGTAAACAAGGAGTG
CAAGATGGCGATCTGTAGTTTATTCTTAGCGGGTTTGTTGATATCTTTCA
TCCACGGCGATGTGACAATAAAGGAAACCGAAACACTTGGATATAATTTA
AAGGACAGCTCTTCAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031718XLOC_031718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050100-exon-scaffold_167-1575043694:1203295..1203455TCONS_00050100-exon-scaffold_167-1575043694:1203295..1203455Clytia hemisphaericaexon
TCONS_00050100-exon-scaffold_167-1575043694:1198357..1198483TCONS_00050100-exon-scaffold_167-1575043694:1198357..1198483Clytia hemisphaericaexon
TCONS_00050100-exon-scaffold_167-1575043694:1197587..1197711TCONS_00050100-exon-scaffold_167-1575043694:1197587..1197711Clytia hemisphaericaexon
TCONS_00050100-exon-scaffold_167-1575043694:1196213..1197262TCONS_00050100-exon-scaffold_167-1575043694:1196213..1197262Clytia hemisphaericaexon
TCONS_00050100-exon-scaffold_167-1510915933:1203295..1203455TCONS_00050100-exon-scaffold_167-1510915933:1203295..1203455Clytia hemisphaericaexon
TCONS_00050100-exon-scaffold_167-1510915933:1198357..1198483TCONS_00050100-exon-scaffold_167-1510915933:1198357..1198483Clytia hemisphaericaexon
TCONS_00050100-exon-scaffold_167-1510915933:1197587..1197711TCONS_00050100-exon-scaffold_167-1510915933:1197587..1197711Clytia hemisphaericaexon
TCONS_00050100-exon-scaffold_167-1510915933:1196213..1197262TCONS_00050100-exon-scaffold_167-1510915933:1196213..1197262Clytia hemisphaericaexon
TCONS_00050100-exon-scaffold_167-1491911889:1203295..1203455TCONS_00050100-exon-scaffold_167-1491911889:1203295..1203455Clytia hemisphaericaexon
TCONS_00050100-exon-scaffold_167-1491911889:1198357..1198483TCONS_00050100-exon-scaffold_167-1491911889:1198357..1198483Clytia hemisphaericaexon
TCONS_00050100-exon-scaffold_167-1491911889:1197587..1197711TCONS_00050100-exon-scaffold_167-1491911889:1197587..1197711Clytia hemisphaericaexon
TCONS_00050100-exon-scaffold_167-1491911889:1196213..1197262TCONS_00050100-exon-scaffold_167-1491911889:1196213..1197262Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050100-proteinTCONS_00050100-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1196213..1203455 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.398928	0.277168	0.980131	0.827828	1.22089	0.723574	4.87404	5.31216	5.65028	7.07305	9.83149	1.69579	1.71511	1.46665	4.75522	29.0815	0.65895	0.805443	0.090224	0.476292	2.32509	2.93793	12.5213	9.30429	23.3588	17.4042	0.584704	0.582233	49.4587	54.2774
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Blast
[Close]
BLAST of TCONS_00050100 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.650e-17
Identity = 54/198 (27.27%), Postives = 86/198 (43.43%), Query Frame = 3 
Query:  186 HGRDGLNGRDGVNGRDGVNGIDGCDXXXXXXXXXXXXXXXXLQGSTGKDGKDLLASQW----KDCVWNHINDDKDKGLVRECSFKKKYATTYLRISVSSNGRVYGCSGCCKRWFVTIDNKECA-PAPIDFSHYRADAKTDDDVGQFL-----LKGNCRIPKTGSVKIGFHIGNCHGLGDADGYTGHKQVTRIMIEEIA 749
             GRDG  G +G+ G  G+ G DG                   +G  G+  ++     W    K C W+ +N   D G + EC+F K  + + LR+  S + R+   + CC+RW+ T +  EC+ P PI+   Y      + +    +     ++G C     G V +   +G C      D  TG   V+RI+IEE+ 
Sbjct:   63 PGRDGSPGANGIPGTPGIPGRDG------------------FKGEKGECLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEELP 242
The following BLAST results are available for this feature:
BLAST of TCONS_00050100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR16.650e-1727.27Collagen triple helix repeat-containing protein 1 ... [more]
back to top