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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050101 ID=TCONS_00050101|Name=TCONS_00050101|organism=Clytia hemisphaerica|type=transcript|length=5387bpRun BLAST on NCBI transcript from alignment at scaffold_167:1218250..1226104- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050101 ID=TCONS_00050101|Name=TCONS_00050101|organism=Clytia hemisphaerica|type=transcript|length=7855bp|location=Sequence derived from alignment at scaffold_167:1218250..1226104- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050101 vs. Swiss-Prot (Human)
Match: RBP2 (E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 8.177e-38 Identity = 72/146 (49.32%), Postives = 103/146 (70.55%), Query Frame = -1
Query: 2940 FNNEEDDDIHVEAIVQVSKLDSVVTGEENETTMFENRSKLYRFDSENKQWKERGLGVLKLTRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEVKPLSEKSDKQWTWFTQADFSEEEQKPEYFCAKFKTSEIAKEFKEKFDECIQIV 3377
+ E+ DDIH E +VQ+ + +VTGEE+E ++ R KL+RFD+E QWKERGLG LK+ + + R+LMRR+QV K+CANH + +TM +KPLS SD+ W W +DFS+ + K E AKFKT E+A+EFK+KF+EC +++
Sbjct: 2003 YKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLS-GSDRAWMWLA-SDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLL 2146 HSP 2 Score: 154.451 bits (389), Expect = 3.452e-37 Identity = 72/146 (49.32%), Postives = 103/146 (70.55%), Query Frame = -2
Query: 4217 FNNEEDDDIHVEAIVQVSKLDSVVTGEENETTMFENRSKLYRFDSENKQWKERGLGVLKLTRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEVKPLSEKSDKQWTWFTQADFSEEEQKPEYFCAKFKTSEIAKEFKEKFDECIQIV 4654
+ E+ DDIH E +VQ+ + +VTGEE+E ++ R KL+RFD+E QWKERGLG LK+ + + R+LMRR+QV K+CANH + +TM +KPLS SD+ W W +DFS+ + K E AKFKT E+A+EFK+KF+EC +++
Sbjct: 2003 YKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLS-GSDRAWMWLA-SDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLL 2146 HSP 3 Score: 137.887 bits (346), Expect = 3.380e-32 Identity = 77/189 (40.74%), Postives = 110/189 (58.20%), Query Frame = -1
Query: 219 FSFTFEPTKIAKTPSPTKSKWKVPTSPTSPEYDPEGEANVE-------FSPLVSLSQLKTQSTGEENESCLFANRCKLFRYD--ANQWKERGVGELKILLNKKTGNHRLVMRRDQIHKLCANHNIRPGTDLNPMKGSNKAYIWQSLGDISDDEPKDMMFAARFKDEEIASQFAQVFKKAADAQQSVAVV 758
F+F+F+ SP+KS K+ S TS D E + E F P+V L L S+GEENE +F++R KL+RYD QWKERG+G++KIL N R+VMRRDQ+ KLCANH I P L MKG+ + ++W + D +D E K A RFK +++A F ++F +A AQ+ +++
Sbjct: 2267 FNFSFK-----SALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLWTAC-DFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKDSLI 2449 HSP 4 Score: 131.724 bits (330), Expect = 2.493e-30 Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = -1
Query: 2946 EDDDIHVEAIVQVSKLDSVVTGEENETTMFENRSKLYRFDSENKQWKERGLGVLKLTRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEVKPLSEKSDKQWTWFTQADFSEEEQKPEYFCAKFKTSEIAKEFKEKFDECIQ 3365
++DIH E IV + +++ V +GEE+E +F+ R+KLYR+D + QWKERG+G +K+ +N R+LMRRDQV K+CANH + TME+KPL+ S+ W T +D+++ E K E +FKT E+A FK+ F+EC Q
Sbjct: 2906 HNEDIHFEPIVSLPEVE-VKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLN-VSNNALVW-TASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQ 3042 HSP 5 Score: 129.413 bits (324), Expect = 1.387e-29 Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = -2
Query: 4223 EDDDIHVEAIVQVSKLDSVVTGEENETTMFENRSKLYRFDSENKQWKERGLGVLKLTRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEVKPLSEKSDKQWTWFTQADFSEEEQKPEYFCAKFKTSEIAKEFKEKFDECIQ 4642
++DIH E IV + +++ V +GEE+E +F+ R+KLYR+D + QWKERG+G +K+ +N R+LMRRDQV K+CANH + TME+KPL+ S+ W T +D+++ E K E +FKT E+A FK+ F+EC Q
Sbjct: 2906 HNEDIHFEPIVSLPEVE-VKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLN-VSNNALVW-TASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQ 3042 HSP 6 Score: 126.716 bits (317), Expect = 9.292e-29 Identity = 90/261 (34.48%), Postives = 129/261 (49.43%), Query Frame = -1
Query: 156 IPTGLNTG--NLFSFGANPKPSLSNASSVDDLSTQDTFSGVTSAFANAEFSFTFEPTKIAKTPSPTKSKWKVPTSPTSPEYDPEGEANV---------EFSPLVSLSQLKTQSTGEENESCLFANRCKLFRYD--ANQWKERGVGELKILLNKKTGNHRLVMRRDQIHKLCANHNIRPGTDLNPMKGSNKAYIWQSLGDISDDEPKDMMFAARFKDEEIASQFAQVFKKAADAQQSVAVVRESNVILVSDGEEESSNQAIR 899
IP G G N F+FG+ N S + + S F ++ FTF P KS + PT T+ + + F P+V L TGEE+E F NR KLFR+D + +WKERG+G +KIL +K +G RL+MRR+Q+ K+CANH I P L P GS+++++W +L D +D+ PK A RFK E A+ F F++A QS+ +NV + +SNQA+R
Sbjct: 1087 IPGGQTIGPRNTFNFGSK------NVSGISFTENMGSSQQKNSGFRRSDDMFTFH--------GPGKSVFGTPTLETANKNHETDGGSAHGDDDDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHAL-DYADELPKPEQLAIRFKTPEEAALFKCKFEEA----QSILKAPGTNVAM-------ASNQAVR 1321 HSP 7 Score: 125.946 bits (315), Expect = 1.451e-28 Identity = 61/141 (43.26%), Postives = 91/141 (64.54%), Query Frame = -1
Query: 249 YDPEGEANVEFSPLVSLSQLKTQSTGEENESCLFANRCKLFRYDA--NQWKERGVGELKILLNKKTGNHRLVMRRDQIHKLCANHNIRPGTDLNPMKGSNKAYIWQSLGDISDDEPKDMMFAARFKDEEIASQFAQVFKKA 665
Y E ++ F P+V + + TGEE+E L++ R KLFR+DA +QWKERG+G LKIL N+ G R++MRR+Q+ K+CANH I +L P+ GS++A++W + D SD + K AA+FK E+A +F Q F++
Sbjct: 2003 YKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLA-SDFSDGDAKLEQLAAKFKTPELAEEFKQKFEEC 2142 HSP 8 Score: 125.176 bits (313), Expect = 2.845e-28 Identity = 63/159 (39.62%), Postives = 102/159 (64.15%), Query Frame = -1
Query: 174 NVEFSPLVSLSQLKTQSTGEENESCLFANRCKLFRYD--ANQWKERGVGELKILLNKKTGNHRLVMRRDQIHKLCANHNIRPGTDLNPMKGSNKAYIWQSLGDISDDEPKDMMFAARFKDEEIASQFAQVFKKAADAQQSVAVVRESNVILVSDGEEES 644
++ F P+VSL +++ +S GEE+E LF R KL+R+D +QWKERGVG++KIL + +R++MRRDQ+ K+CANH I +L P+ SN A +W + D +D E K A RFK +E+A F + F+ + QQ++ +++ +V L ++ +E+
Sbjct: 2909 DIHFEPIVSLPEVEVKS-GEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTA-SDYADGEAKVEQLAVRFKTKEVADCFKKTFE---ECQQNLMKLQKGHVSLAAELSKET 3062 HSP 9 Score: 124.405 bits (311), Expect = 5.171e-28 Identity = 57/138 (41.30%), Postives = 88/138 (63.77%), Query Frame = -1
Query: 2955 EEDDDIHVEAIVQVSKLDSVVTGEENETTMFENRSKLYRFDSENKQWKERGLGVLKLTRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEVKPLSEKSDKQWTWFTQADFSEEEQKPEYFCAKFKTSEIAKEFKEKFDE 3368
EE D + E +V + L V +GEENE +F +R+KLYR+D + QWKERG+G +K+ + R++MRRDQV KLCANH + M ++ + + +++ W W T DF++ E+K E+ +FK ++A FK+ FDE
Sbjct: 2303 EERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNM-KGTERVWLW-TACDFADGERKVEHLAVRFKLQDVADSFKKIFDE 2438 HSP 10 Score: 121.709 bits (304), Expect = 3.376e-27 Identity = 57/138 (41.30%), Postives = 88/138 (63.77%), Query Frame = -2
Query: 4232 EEDDDIHVEAIVQVSKLDSVVTGEENETTMFENRSKLYRFDSENKQWKERGLGVLKLTRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEVKPLSEKSDKQWTWFTQADFSEEEQKPEYFCAKFKTSEIAKEFKEKFDE 4645
EE D + E +V + L V +GEENE +F +R+KLYR+D + QWKERG+G +K+ + R++MRRDQV KLCANH + M ++ + + +++ W W T DF++ E+K E+ +FK ++A FK+ FDE
Sbjct: 2303 EERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNM-KGTERVWLW-TACDFADGERKVEHLAVRFKLQDVADSFKKIFDE 2438 HSP 11 Score: 119.398 bits (298), Expect = 1.376e-26 Identity = 63/151 (41.72%), Postives = 90/151 (59.60%), Query Frame = -1
Query: 2898 HVEAIVQVSKLDSVVTGEENETTMFENRSKLYRFDSENKQWKERGLGVLKLTRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEVKPLSEKSDKQWTWFTQADFSEEEQKPEYFCAKFKTSEIAKEFKEKFDECIQIVGGKSATVSTPVQKA 3350
H E +V + V TGEE+E F NR+KL+RFD E+K+WKERG+G +K+ R K R+LMRR+QV K+CANH + M++ P + SD+ + W D+++E KPE +FKT E A FK KF+E I+ V+ +A
Sbjct: 1171 HFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTP-NAGSDRSFVWHA-LDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQSILKAPGTNVAMASNQA 1319 HSP 12 Score: 118.242 bits (295), Expect = 3.085e-26 Identity = 63/151 (41.72%), Postives = 90/151 (59.60%), Query Frame = -2
Query: 4175 HVEAIVQVSKLDSVVTGEENETTMFENRSKLYRFDSENKQWKERGLGVLKLTRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEVKPLSEKSDKQWTWFTQADFSEEEQKPEYFCAKFKTSEIAKEFKEKFDECIQIVGGKSATVSTPVQKA 4627
H E +V + V TGEE+E F NR+KL+RFD E+K+WKERG+G +K+ R K R+LMRR+QV K+CANH + M++ P + SD+ + W D+++E KPE +FKT E A FK KF+E I+ V+ +A
Sbjct: 1171 HFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTP-NAGSDRSFVWHA-LDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQSILKAPGTNVAMASNQA 1319 HSP 13 Score: 93.2041 bits (230), Expect = 1.371e-18 Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = -2
Query: 5114 GVGDIKLTKNTKTGYCRVLMRRDQIHKLCANHAIMPNMELKPLNTSDVSWIWFTPSDYSEGVPPEPVQFCVKFKNKDIAEEFKKQFVASQ 5383
GVGDIK+ +T Y R+LMRRDQ+ K+CANH I MELKPLN S+ + +W T SDY++G + Q V+FK K++A+ FKK F Q
Sbjct: 2954 GVGDIKILWHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVW-TASDYADG-EAKVEQLAVRFKTKEVADCFKKTFEECQ 3041 HSP 14 Score: 87.8113 bits (216), Expect = 5.587e-17 Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = -2
Query: 5105 GVGDIKLTKNTKTGYCRVLMRRDQIHKLCANHAIMPNMELKPLNTSDVSWIWFTPSDYSEGVPPEPVQFCVKFKNKDIAEEFKKQFVASQGFM 5383
G+G++K+ KN G R+LMRR+Q+ K+CANH I M LKPL+ SD +W+W SD+S+G + Q KFK ++AEEFK++F Q +
Sbjct: 2056 GLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLA-SDFSDG-DAKLEQLAAKFKTPELAEEFKQKFEECQRLL 2146 The following BLAST results are available for this feature:
BLAST of TCONS_00050101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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