TCONS_00050184 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050184
Unique NameTCONS_00050184
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050184 ID=TCONS_00050184|Name=TCONS_00050184|organism=Clytia hemisphaerica|type=transcript|length=347bp
CGATGTCAAAAACCATTGGAGAGAATCTGCTTGCTTCTGCATGATTGCAT
ACTGCAGTGATGACCAAAGTTCCAGTGATATCGTTCTCTTCCAGCTGTTT
AATGGTTTGCTGGTGGACTGCTTGTAAAACCTTTCCGCTAATGGAGCTTC
CCAGTTTGTACAACTCAGATCCAATAAAGGATTTCATATCAAGCAATTTT
GCCTCAAAATCTTGATTTCTTGTTTCTCCATTGAAAGGGAAGTACCGCGT
GTTTAACCGGACAGCATTGTTCCCAAATGGCACGTCTTTTCTTAATGTTG
ACTTTTCAAGGTCCACCAAGTATTTTCCATGATTGTGAAAGTCTTGt
Run BLAST on NCBI

protein sequence of TCONS_00050184-protein

>TCONS_00050184-protein ID=TCONS_00050184-protein|Name=TCONS_00050184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
QDFHNHGKYLVDLEKSTLRKDVPFGNNAVRLNTRYFPFNGETRNQDFEAK
LLDMKSFIGSELYKLGSSISGKVLQAVHQQTIKQLEENDITGTLVITAVC
NHAEASRFSPMVFDI
Run BLAST on NCBI

transcript from alignment at scaffold_167:1295529..1295875

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050184 ID=TCONS_00050184|Name=TCONS_00050184|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at scaffold_167:1295529..1295875 (Clytia hemisphaerica)
aCAAGACTTTCACAATCATGGAAAATACTTGGTGGACCTTGAAAAGTCAA
CATTAAGAAAAGACGTGCCATTTGGGAACAATGCTGTCCGGTTAAACACG
CGGTACTTCCCTTTCAATGGAGAAACAAGAAATCAAGATTTTGAGGCAAA
ATTGCTTGATATGAAATCCTTTATTGGATCTGAGTTGTACAAACTGGGAA
GCTCCATTAGCGGAAAGGTTTTACAAGCAGTCCACCAGCAAACCATTAAA
CAGCTGGAAGAGAACGATATCACTGGAACTTTGGTCATCACTGCAGTATG
CAATCATGCAGAAGCAAGCAGATTCTCTCCAATGGTTTTTGACATCG

Coding sequence (CDS) from alignment at scaffold_167:1295529..1295875

>TCONS_00050184 ID=TCONS_00050184|Name=TCONS_00050184|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_167:1295529..1295875 (Clytia hemisphaerica)
CAAGACTTTCACAATCATGGAAAATACTTGGTGGACCTTGAAAAGTCAAC
ATTAAGAAAAGACGTGCCATTTGGGAACAATGCTGTCCGGTTAAACACGC
GGTACTTCCCTTTCAATGGAGAAACAAGAAATCAAGATTTTGAGGCAAAA
TTGCTTGATATGAAATCCTTTATTGGATCTGAGTTGTACAAACTGGGAAG
CTCCATTAGCGGAAAGGTTTTACAAGCAGTCCACCAGCAAACCATTAAAC
AGCTGGAAGAGAACGATATCACTGGAACTTTGGTCATCACTGCAGTATGC
AATCATGCAGAAGCAAGCAGATTCTCTCCAATGGTTTTTGACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031789XLOC_031789Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050184-proteinTCONS_00050184-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050184-exon-scaffold_167-1491911889:1295529..1295875TCONS_00050184-exon-scaffold_167-1491911889:1295529..1295875Clytia hemisphaericaexon
TCONS_00050184-exon-scaffold_167-1510915933:1295529..1295875TCONS_00050184-exon-scaffold_167-1510915933:1295529..1295875Clytia hemisphaericaexon
TCONS_00050184-exon-scaffold_167-1575043694:1295529..1295875TCONS_00050184-exon-scaffold_167-1575043694:1295529..1295875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1295529..1295875 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.111807	0.635471	0.459473	0	1.54024	0.339194	4.88849	3.65505	0.531621	2.75946	2.1479	2.57556	1.06518	1.57001	0	1.29297	3.19775	1.72278	1.52059	0	2.75157	0	0	0	2.21507	0.786198	0	0.881357	0.403787	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050184 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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