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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050188 ID=TCONS_00050188|Name=TCONS_00050188|organism=Clytia hemisphaerica|type=transcript|length=2557bp
GTCGAAAAAGTTGCTGGATGGTAAAAAGTTGTGGGACTCGAAAATattcg
aaaatgaaaaatcaaataaaaaatgacgtcataatcgattcgagaaaagt
gtcttttcaaaatattataaacTTACGAGTGACTAcgcattcaaaaaata
tttcgttcgaaaaatcacaaaaaatatcattttacaATAAAATATTCCGC
TAATCTAAcgctttttgttctttttagaCTTTTTGTTCCCGGGAAGGGCA
CTCTGTTCTTTCAGGGCGGCATGCCCTTCCGCCTTAATATGGGCGAATAA
CTTATTTCGAGTTGGGAACTCAAATTGACATACACCACAAGCAAAATGTT
CTTCTCCTGTTTCATTAGATTGttgctgctgttgttgttgttgattgtTC
TTAGAACTATTGTTCTTATTGTTCTTATTTCTACGTGCTGGCTTTTTGTT
CTCAGGTTTTTTCGAGACGGTACCATCCTCAGTATTGTTATTTTCTGAta
cttcttctccttcttcgtTTTCATTCACTTCAGAAAGAACCTGTTCCGct
tttttctcaaagtttttatgaTGTTTAGAATGGTGTTGGGAATTAGCCAA
TTTTTCCATATTGTAAGGTATAGAGTCCTTGACAggtgaattttcaagtt
tagcACACTTTTCTGTTGAATCATCGACATTTTCGTTTACCTTTGTTTCC
TCGctgtttttttcgttttctgGATTCTCATCTCCCGATCGGAATAAGTT
TTCCTCCTCTGAATCCGATTCGGAATCACCACCGCCAATCTCGAATAACT
GTTTCCCCGAACTCTTGTTACGTTTCCCCGATTGCGATTGGTTCTTACGG
TGCACACACAAAGAATCAGAAAGCGGTGAGTCACCAAGAGTTGCTTGAAT
GCCTTTTTGAACCATTTCGTCCATATGACGTAACCGATCTGCGGTCTCGC
GGACCTCCTTTTTCTTGCTCTTACGACGGGGTAGAGCCAATGAGTCTCTA
GGGTGTAAACCTTCCTCAATCTCCAACCCAGCCTCCCAAGCTTTCGCATC
TTCTTCGTCATACAAAGGCATattatttctctttttctttgatttcttat
cCTTCATCTTAGCCGATCCTTCTCGATGGATACCTCGCTGCTTGGTATAC
TCCAAAGAATCAGTTGAATGCTTTAAAATGGAATCCTCAGGAATAACACT
ATTCTTTGGACTCGGTGATCTAGTATGGTCAATAACGTTCCTGAGAACAA
CATTTGGTGTTAGATTCATCGAATCGATACGTTTCATCACTTCAACCtcg
ccatctttgatttgcGCATCTTCGGGACCGTCAAAATCGTCATCATCATT
TTGCTGAGCCAGCAATTCGTTAGCTAACTCATTCTCCATTTCGGTTCGAA
TCAGTTCCATGTTCTCTTTATGTTTCTTAGATTTCTCGTGATTAGAAAGC
GCTTTATCGGACTTGAACGTTTTATCACAAGCGATACAATAAAACTCGTC
TACCATTTCAACATCCTCGTCTGCGGACCCTTCATCGGTCGATCCGACAC
CGTCATTGGCTCCAGTGCCACCAAACTGGTCGTCAAAATGTGAATCGATG
TTATCCAGAGCTGAATCATTCATTGTCATCCAATCTTGTTCTGTGTAATC
CTCAAGCGCTTCGTTCCGCTTCCGTATATCGTCCGCTCGCTTCTGATCGG
CTTTCCGTTTATTCTCTTGTTTCGCAGCCTCCATTTGCTCGCGGTACGCT
TTGACACGTCGGTCACGCTTACGTATGTACTGAACCAACGCGCGTACTTC
TTCGTTACGTTTACGTCTAAATTGATCGcgtatctttttattttctttct
ccaTTAAACGTTGCGTAGGTCGGTTGGGAGCTTGACGAATATCATATTTA
TCTTTCCACACGAAAGATTTCTTGGTGCAGTAACTCAACCAATACGAATA
GAAAGGAGCTACAACTGTCTCATAGTCACTGTTCGAGTCACCGAAATCCG
GTGTCTCGTATTCGTCAGCCGATTCTCCTTCAAGATACGGTTCCTCCTCT
TCGGCTACCATCGTAAATACCTTCCCGTAGACGGCGTAAAAACCGTTCGG
GGTATCATTATGTCCGGTGTGACATCCTGGGTTGAAATATTGCATCAAAT
CTACCGAATCATCTACAAACTCATCACCACCACGTAAGATTGCTTCACGA
TGTTTATCGTAGAAAGCTCGTTCTTGTCGGTCACTCAAAACATCATAAGC
GCCTTGTATCTCGCGAAATATCTCCGTATATTCATCAACTTTATCCGGAT
TTTTATCCGGGTGATAACGCAAAGCCATTTTGCGGTATGACTTTTTGATT
TCTGCATCGTCAGCATCACGTGGAACGCCGAGAACTTCATAATGGCACCT
CATGTTGTTGAtgttattgttttttatttttgtttatttgatttgttttg
ctaaaagtagaaaaaatagattttattgatATATCGTACAGTTTAGTCTA
ACAGAGTAAGTCTAGTCTAACACACCATTTTCGTTAGAATAGAGAAAGTC
TTGGTCG Run BLAST on NCBI protein sequence of TCONS_00050188-protein >TCONS_00050188-protein ID=TCONS_00050188-protein|Name=TCONS_00050188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=732bp
MRCHYEVLGVPRDADDAEIKKSYRKMALRYHPDKNPDKVDEYTEIFREIQ
GAYDVLSDRQERAFYDKHREAILRGGDEFVDDSVDLMQYFNPGCHTGHND
TPNGFYAVYGKVFTMVAEEEEPYLEGESADEYETPDFGDSNSDYETVVAP
FYSYWLSYCTKKSFVWKDKYDIRQAPNRPTQRLMEKENKKIRDQFRRKRN
EEVRALVQYIRKRDRRVKAYREQMEAAKQENKRKADQKRADDIRKRNEAL
EDYTEQDWMTMNDSALDNIDSHFDDQFGGTGANDGVGSTDEGSADEDVEM
VDEFYCIACDKTFKSDKALSNHEKSKKHKENMELIRTEMENELANELLAQ
QNDDDDFDGPEDAQIKDGEVEVMKRIDSMNLTPNVVLRNVIDHTRSPSPK
NSVIPEDSILKHSTDSLEYTKQRGIHREGSAKMKDKKSKKKRNNMPLYDE
EDAKAWEAGLEIEEGLHPRDSLALPRRKSKKKEVRETADRLRHMDEMVQK
GIQATLGDSPLSDSLCVHRKNQSQSGKRNKSSGKQLFEIGGGDSESDSEE
ENLFRSGDENPENEKNSEETKVNENVDDSTEKCAKLENSPVKDSIPYNME
KLANSQHHSKHHKNFEKKAEQVLSEVNENEEGEEVSENNNTEDGTVSKKP
ENKKPARRNKNNKNNSSKNNQQQQQQQQSNETGEEHFACGVCQFEFPTRN
KLFAHIKAEGHAALKEQSALPGNKKSKKNKKR Run BLAST on NCBI transcript from alignment at scaffold_167:1371491..1374047 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050188 ID=TCONS_00050188|Name=TCONS_00050188|organism=Clytia hemisphaerica|type=transcript|length=2557bp|location=Sequence derived from alignment at scaffold_167:1371491..1374047 (Clytia hemisphaerica)
CGACCAAGACTTTCTCTATTCTAACGAAAATGGTGTGTTAGACTAGACTT
ACTCTGTTAGACTAAACTGTACGATATatcaataaaatctattttttcta
cttttagcaaaacaaatcaaataaacaaaaataaaaaacaataacaTCAA
CAACATGAGGTGCCATTATGAAGTTCTCGGCGTTCCACGTGATGCTGACG
ATGCAGAAATCAAAAAGTCATACCGCAAAATGGCTTTGCGTTATCACCCG
GATAAAAATCCGGATAAAGTTGATGAATATACGGAGATATTTCGCGAGAT
ACAAGGCGCTTATGATGTTTTGAGTGACCGACAAGAACGAGCTTTCTACG
ATAAACATCGTGAAGCAATCTTACGTGGTGGTGATGAGTTTGTAGATGAT
TCGGTAGATTTGATGCAATATTTCAACCCAGGATGTCACACCGGACATAA
TGATACCCCGAACGGTTTTTACGCCGTCTACGGGAAGGTATTTACGATGG
TAGCCGAAGAGGAGGAACCGTATCTTGAAGGAGAATCGGCTGACGAATAC
GAGACACCGGATTTCGGTGACTCGAACAGTGACTATGAGACAGTTGTAGC
TCCTTTCTATTCGTATTGGTTGAGTTACTGCACCAAGAAATCTTTCGTGT
GGAAAGATAAATATGATATTCGTCAAGCTCCCAACCGACCTACGCAACGT
TTAAtggagaaagaaaataaaaagatacgCGATCAATTTAGACGTAAACG
TAACGAAGAAGTACGCGCGTTGGTTCAGTACATACGTAAGCGTGACCGAC
GTGTCAAAGCGTACCGCGAGCAAATGGAGGCTGCGAAACAAGAGAATAAA
CGGAAAGCCGATCAGAAGCGAGCGGACGATATACGGAAGCGGAACGAAGC
GCTTGAGGATTACACAGAACAAGATTGGATGACAATGAATGATTCAGCTC
TGGATAACATCGATTCACATTTTGACGACCAGTTTGGTGGCACTGGAGCC
AATGACGGTGTCGGATCGACCGATGAAGGGTCCGCAGACGAGGATGTTGA
AATGGTAGACGAGTTTTATTGTATCGCTTGTGATAAAACGTTCAAGTCCG
ATAAAGCGCTTTCTAATCACGAGAAATCTAAGAAACATAAAGAGAACATG
GAACTGATTCGAACCGAAATGGAGAATGAGTTAGCTAACGAATTGCTGGC
TCAGCAAAATGATGATGACGATTTTGACGGTCCCGAAGATGCgcaaatca
aagatggcgaGGTTGAAGTGATGAAACGTATCGATTCGATGAATCTAACA
CCAAATGTTGTTCTCAGGAACGTTATTGACCATACTAGATCACCGAGTCC
AAAGAATAGTGTTATTCCTGAGGATTCCATTTTAAAGCATTCAACTGATT
CTTTGGAGTATACCAAGCAGCGAGGTATCCATCGAGAAGGATCGGCTAAG
ATGAAGgataagaaatcaaagaaaaagagaaataatATGCCTTTGTATGA
CGAAGAAGATGCGAAAGCTTGGGAGGCTGGGTTGGAGATTGAGGAAGGTT
TACACCCTAGAGACTCATTGGCTCTACCCCGTCGTAAGAGCAAGAAAAAG
GAGGTCCGCGAGACCGCAGATCGGTTACGTCATATGGACGAAATGGTTCA
AAAAGGCATTCAAGCAACTCTTGGTGACTCACCGCTTTCTGATTCTTTGT
GTGTGCACCGTAAGAACCAATCGCAATCGGGGAAACGTAACAAGAGTTCG
GGGAAACAGTTATTCGAGATTGGCGGTGGTGATTCCGAATCGGATTCAGA
GGAGGAAAACTTATTCCGATCGGGAGATGAGAATCcagaaaacgaaaaaa
acagCGAGGAAACAAAGGTAAACGAAAATGTCGATGATTCAACAGAAAAG
TGTgctaaacttgaaaattcaccTGTCAAGGACTCTATACCTTACAATAT
GGAAAAATTGGCTAATTCCCAACACCATTCTAAACAtcataaaaactttg
agaaaaaagCGGAACAGGTTCTTTCTGAAGTGAATGAAAacgaagaagga
gaagaagtaTCAGAAAATAACAATACTGAGGATGGTACCGTCTCGAAAAA
ACCTGAGAACAAAAAGCCAGCACGTAGAAATAAGAACAATAAGAACAATA
GTTCTAAGAacaatcaacaacaacaacagcagcaaCAATCTAATGAAACA
GGAGAAGAACATTTTGCTTGTGGTGTATGTCAATTTGAGTTCCCAACTCG
AAATAAGTTATTCGCCCATATTAAGGCGGAAGGGCATGCCGCCCTGAAAG
AACAGAGTGCCCTTCCCGGGAACAAAAAGtctaaaaagaacaaaaagcgT
TAGATTAGCGGAATATTTTATtgtaaaatgatattttttgtgatttttcg
aacgaaatattttttgaatgcgTAGTCACTCGTAAgtttataatattttg
aaaagacacttttctcgaatcgattatgacgtcattttttatttgatttt
tcattttcgaatATTTTCGAGTCCCACAACTTTTTACCATCCAGCAACTT
TTTCGAC Coding sequence (CDS) from alignment at scaffold_167:1371491..1374047 >TCONS_00050188 ID=TCONS_00050188|Name=TCONS_00050188|organism=Clytia hemisphaerica|type=CDS|length=2199bp|location=Sequence derived from alignment at scaffold_167:1371491..1374047 (Clytia hemisphaerica)
ATGAGGTGCCATTATGAAGTTCTCGGCGTTCCACGTGATGCTGACGATGC
AGAAATCAAAAAGTCATACCGCAAAATGGCTTTGCGTTATCACCCGGATA
AAAATCCGGATAAAGTTGATGAATATACGGAGATATTTCGCGAGATACAA
GGCGCTTATGATGTTTTGAGTGACCGACAAGAACGAGCTTTCTACGATAA
ACATCGTGAAGCAATCTTACGTGGTGGTGATGAGTTTGTAGATGATTCGG
TAGATTTGATGCAATATTTCAACCCAGGATGTCACACCGGACATAATGAT
ACCCCGAACGGTTTTTACGCCGTCTACGGGAAGGTATTTACGATGGTAGC
CGAAGAGGAGGAACCGTATCTTGAAGGAGAATCGGCTGACGAATACGAGA
CACCGGATTTCGGTGACTCGAACAGTGACTATGAGACAGTTGTAGCTCCT
TTCTATTCGTATTGGTTGAGTTACTGCACCAAGAAATCTTTCGTGTGGAA
AGATAAATATGATATTCGTCAAGCTCCCAACCGACCTACGCAACGTTTAA
tggagaaagaaaataaaaagatacgCGATCAATTTAGACGTAAACGTAAC
GAAGAAGTACGCGCGTTGGTTCAGTACATACGTAAGCGTGACCGACGTGT
CAAAGCGTACCGCGAGCAAATGGAGGCTGCGAAACAAGAGAATAAACGGA
AAGCCGATCAGAAGCGAGCGGACGATATACGGAAGCGGAACGAAGCGCTT
GAGGATTACACAGAACAAGATTGGATGACAATGAATGATTCAGCTCTGGA
TAACATCGATTCACATTTTGACGACCAGTTTGGTGGCACTGGAGCCAATG
ACGGTGTCGGATCGACCGATGAAGGGTCCGCAGACGAGGATGTTGAAATG
GTAGACGAGTTTTATTGTATCGCTTGTGATAAAACGTTCAAGTCCGATAA
AGCGCTTTCTAATCACGAGAAATCTAAGAAACATAAAGAGAACATGGAAC
TGATTCGAACCGAAATGGAGAATGAGTTAGCTAACGAATTGCTGGCTCAG
CAAAATGATGATGACGATTTTGACGGTCCCGAAGATGCgcaaatcaaaga
tggcgaGGTTGAAGTGATGAAACGTATCGATTCGATGAATCTAACACCAA
ATGTTGTTCTCAGGAACGTTATTGACCATACTAGATCACCGAGTCCAAAG
AATAGTGTTATTCCTGAGGATTCCATTTTAAAGCATTCAACTGATTCTTT
GGAGTATACCAAGCAGCGAGGTATCCATCGAGAAGGATCGGCTAAGATGA
AGgataagaaatcaaagaaaaagagaaataatATGCCTTTGTATGACGAA
GAAGATGCGAAAGCTTGGGAGGCTGGGTTGGAGATTGAGGAAGGTTTACA
CCCTAGAGACTCATTGGCTCTACCCCGTCGTAAGAGCAAGAAAAAGGAGG
TCCGCGAGACCGCAGATCGGTTACGTCATATGGACGAAATGGTTCAAAAA
GGCATTCAAGCAACTCTTGGTGACTCACCGCTTTCTGATTCTTTGTGTGT
GCACCGTAAGAACCAATCGCAATCGGGGAAACGTAACAAGAGTTCGGGGA
AACAGTTATTCGAGATTGGCGGTGGTGATTCCGAATCGGATTCAGAGGAG
GAAAACTTATTCCGATCGGGAGATGAGAATCcagaaaacgaaaaaaacag
CGAGGAAACAAAGGTAAACGAAAATGTCGATGATTCAACAGAAAAGTGTg
ctaaacttgaaaattcaccTGTCAAGGACTCTATACCTTACAATATGGAA
AAATTGGCTAATTCCCAACACCATTCTAAACAtcataaaaactttgagaa
aaaagCGGAACAGGTTCTTTCTGAAGTGAATGAAAacgaagaaggagaag
aagtaTCAGAAAATAACAATACTGAGGATGGTACCGTCTCGAAAAAACCT
GAGAACAAAAAGCCAGCACGTAGAAATAAGAACAATAAGAACAATAGTTC
TAAGAacaatcaacaacaacaacagcagcaaCAATCTAATGAAACAGGAG
AAGAACATTTTGCTTGTGGTGTATGTCAATTTGAGTTCCCAACTCGAAAT
AAGTTATTCGCCCATATTAAGGCGGAAGGGCATGCCGCCCTGAAAGAACA
GAGTGCCCTTCCCGGGAACAAAAAGtctaaaaagaacaaaaagcgTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050188-exon-scaffold_167-1491911889:1371491..1374047 | TCONS_00050188-exon-scaffold_167-1491911889:1371491..1374047 | Clytia hemisphaerica | exon |
| TCONS_00050188-exon-scaffold_167-1510915933:1371491..1374047 | TCONS_00050188-exon-scaffold_167-1510915933:1371491..1374047 | Clytia hemisphaerica | exon |
| TCONS_00050188-exon-scaffold_167-1575043694:1371491..1374047 | TCONS_00050188-exon-scaffold_167-1575043694:1371491..1374047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1371491..1374047 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00050188 vs. Swiss-Prot (Human)
Match: DJC21 (DnaJ homolog subfamily C member 21 OS=Homo sapiens GN=DNAJC21 PE=1 SV=2) HSP 1 Score: 345.51 bits (885), Expect = 7.931e-108 Identity = 180/355 (50.70%), Postives = 246/355 (69.30%), Query Frame = -2
Query: 1387 MRCHYEVLGVPRDADDAEIKKSYRKMALRYHPDKNPDKVDEYTEIFREIQGAYDVLSDRQERAFYDKHREAILRGG--DEFVDDSVDLMQYFNPGCHTGHNDTPNGFYAVYGKVFTMVAEEEEPYLEGESADEYETPDFGDSNSDYETVVAPFYSYWLSYCTKKSFVWKDKYDIRQAPNRPTQRLMEKENKKIRDQFRRKRNEEVRALVQYIRKRDRRVKAYREQMEAAKQENKRKADQKRADDIRKRNEALEDYTEQDWMTMN--DSALDNIDSHFDDQFG-GTGAN-----------DGVGSTDEGSADEDVEMVDEFYCIACDKTFKSDKALSNHEKSKKHKENMELIRTEM 2403
M+CHYE LGV RDA + E+KK+YRK+AL++HPDKN D E E F+ IQ AYDVLSD QERA+YD HREA+L+GG E+ DDS+DL++YF C++G+ D GFY VY VF M+A+EE + E D++ P FGDS SDY+TVV PFY+YW S+CT+K+F WK++YD RQA NR +R MEKENKKIRD+ R+++NE VR LV +IRKRD+RV+A+R+ +E E RKA++ R K+ + +E Y EQ WMTM + L +++ ++ +FG G+ N DG S DE ED E+ D+ YC ACDK+FK++KA+ NHEKSKKH+E + L++ ++
Sbjct: 1 MKCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAWYDNHREALLKGGFDGEYQDDSLDLLRYFTVTCYSGYGDDEKGFYTVYRNVFEMIAKEELESVLEEEVDDF--PTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDTRQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDKRVQAHRKLVEEQNAEKARKAEEMRRQQKLKQAKLVEQYREQSWMTMANLEKELQEMEARYEKEFGDGSDENEMEEHELKDEEDGKDS-DEA---EDAELYDDLYCPACDKSFKTEKAMKNHEKSKKHREMVALLKQQL 349
The following BLAST results are available for this feature:
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