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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049963 ID=TCONS_00049963|Name=TCONS_00049963|organism=Clytia hemisphaerica|type=transcript|length=4704bpRun BLAST on NCBI transcript from alignment at scaffold_167:1418125..1444126+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049963 ID=TCONS_00049963|Name=TCONS_00049963|organism=Clytia hemisphaerica|type=transcript|length=26002bp|location=Sequence derived from alignment at scaffold_167:1418125..1444126+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049963 vs. Swiss-Prot (Human)
Match: TUTLB (Protein turtle homolog B OS=Homo sapiens GN=IGSF9B PE=2 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 7.234e-25 Identity = 103/419 (24.58%), Postives = 171/419 (40.81%), Query Frame = 3
Query: 231 ALNGSSVVLPCQAKGHPIPKISWLRK--VEGAKKWHKLDDRFSITPKGLFLKDVEKEDTGQY-----QIXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXFLPCGKLKVLPGDRIV---WKKDGVNVLEKYRDRASVDVNGTLFLDPVKRGDLGLYQCLVTTKRFEDEVTITKTMFLNVKYVPVIIYILPSVKIYVHKTAVLPCTAQGNPGVNFRWLFPNGERIKNTPDKKYSVSSNGSLIIRNIGTTDAKNYTCAPYSDLGS-GEKRHTELIVFSPPSFFNKAQGTVDVLEGDTVTLDCASGGIPKPVITWGHNNKKIKDGERFKTESI--GKLNIRDVRGSDAGSYACIVRSEAGEIHRSTTLVVKG-KPGTPTLIEVSVESGVVFARWLRAYDGGSPQSFEIWGRLASEDDFSW 1445
A G S+ + C A G+P P ++WL++ + GA +++ D L + V +ED G Y I +T L V P +++A L C + + PG+ W+ + V + R + ++GTL + VK D G Y C+ + + + +L V+Y ++ + P + + V + C P +G ++ + +++ +GS+ I YTC PY+ LG+ G+ L++ PP F G + + CA+ G P PVITW +K+ R K ++ G L R + D G + C+ + I ST L V G P P + V V W YDGG Q+F +W + A W
Sbjct: 151 AKEGGSITMTCTAFGNPKPIVTWLKEGTLLGASGKYQVSD------GSLTVTSVSREDRGAYTCRAYSIQGEAVHTTHLLVQGPPFIVSPPENITVNISQDALLTC-RAEAYPGNLTYTWYWQDENVYFQNDLKLRVRILIDGTLIIFRVKPEDSGKYTCVPSNSLGRSP---SASAYLTVQYPARVLNMPPVIYVPVGIHGYIRCPVDAEPPATVVKWNKDGRPLQVEKNLGWTLMEDGSIRIEEATEEALGTYTCVPYNTLGTMGQSAPARLVLKDPPYFTVLPGWEYRQEAGRELLIPCAAAGDPFPVITW----RKVGKPSRSKHSALPSGSLQFRALSKEDHGEWECVATNVVTSITASTHLTVIGTSPHAPGSVRVQVSMTTANVSWEPGYDGGYEQTFSVWMKRAQFGPHDW 555 The following BLAST results are available for this feature:
BLAST of TCONS_00049963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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