TCONS_00049977 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049977
Unique NameTCONS_00049977
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1197

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049977 ID=TCONS_00049977|Name=TCONS_00049977|organism=Clytia hemisphaerica|type=transcript|length=1197bp
AGATCCTCATAGAATCTTTCTATACTGCGACTTCTAATGCTTGAATTGGA
TCAAATAAGGTTTGCTGTCCGAATCGGATAAAGAGAGATTGCTTACTAAA
TTTATAttgttctttttcttcaggTTGTGCTGAAGGCTATGCTAAGGATG
ctaCTGAGATTCAAAACCTTCAGATAGCAGACGGGGATGTATGTAGGAAT
ATTGCGATACCAATATACATGATTTTCCCTCGACTTTTCACTTGTCCAAC
CACAGAAACACCTAACTTCAAGATTGAATTTGAGATCAACATTGTTGTTG
TGTTTTTGGATGATCATTTGGTGACAGAAAATTTCCCTGTCAAACTATac
agatgatgatgattttatGATATTCTTAAATAATTACTTTATATCGTATT
TCCCTGTTAGTAATATGAATAATTTCTTCACAAAAGGTCGTTTCAGGCGT
AATAAATCAAGGGAAACAGATTAGGCCTTAGTGGGTTCTGTAATCTATTT
GGTATTTCGCTATTATCTTCATAATTTTGGACCTCAACATTAAGCCGTTA
CTAAATTATTGCCTCTGCAAACTAAATTAACTTTATTTTAATGTATGCAA
ATTGCCTGATAgtcaaagtttgaaattttggtaatcAAGTCACTTTTTTA
GACCTGAAGAATCAAACCAATATATTGATACCTTTTAATAccattcttta
tttttgtattatttgcAAGAATGGTGGGATTTTGTTGTCCCTGTCCTTAC
TACAGAGACTCGTAGATTCGTAGATGTCACAACGCCTTGTAGCCCCGTAA
AGGGTATTTTGACATCATTTGATCTCTTAGTTCTATATTTTAAGTGTCCT
GCTGCCTTTGAAAAGCAAGGCTCCTTGGAGGATAATTCCCCCGCATCTTT
TTAAAACACGAGatacaattttttataagaattaattATTATAATACAAG
ATGTAAATAATGGAAATTagaatttattattttgaatagcttttttgttt
ttttcttcttttctatgtttataaaatttatattttctgtTTCACTGTCA
AGTCATGGCTTGACGTGTTAAGTAAATCTTGTATGTCTGATTTGTGTGGG
TAAAGTTATTTAATATCGCATACGATCTTTGATTTGAATTGGTCTTCAAG
AAtctatttttataatttattacagctaaaattaaaaaagaagcgaa
Run BLAST on NCBI

transcript from alignment at scaffold_167:1610448..1613824+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049977 ID=TCONS_00049977|Name=TCONS_00049977|organism=Clytia hemisphaerica|type=transcript|length=3377bp|location=Sequence derived from alignment at scaffold_167:1610448..1613824+ (Clytia hemisphaerica)
AGATCCTCATAGAATCTTTCTATACTGCGACTTCTAATGCTTGAATTGGA
TCAAATAAGGTTTGCTGTCCGAATCGGATAAAGAGAGATTGCTTACTAAA
TTTATAttgttctttttcttcaggTTGTGCTGAAGGCTATGCTAAGGATG
GTAAGTGAGTTTAATACATCCGAAAAGTTTCTTTAAGAGGACTAGTTTGC
TGGTTTTTGTctacaaaattttctgaaatttttgaaattttcgtaAGTTA
AAACCAGAATTTTCCGTAAACTGAGCAAAGATTCTCTATTTTAAACATGT
CTTTTTCGATGTGTTACAGTTGCTAGCTTTTTGGTAATTGCTTTACAATT
TATTATCCGTATTTTTTAGGATTGACAGTAATAATAAGGTACACATCCTC
TGAAAATTCCCCCTCCAAATcttatcaactttctttttaaattttagcta
CTGAGATTCAAAACCTTCAGGTAGGATgtgcttttttaattttttatgaa
actAATTTTATCAAGAGAAATGAACCACTCCTTATTTTGTCCTAAATTAA
AATTACGCATTCTATAAAATACGTCACAATCTGTTTCATTTTTCCTCATA
TCAATTGAATACACTACTCAAAATCTTGTTTGATAAACATGATTTTTGTA
TCTTGAAACAGGATTTTTCGATTTATCGTATGTAAGTAATCAAAAAAACG
CATCGCGAATTGACAAATGCGATACGCTAATTCAATCCCTGGCATAAAGT
CATTTTTAGGGCTCGTCAGACAAAATAAGCGTTTGTATAAAGTGCTCTCA
TTTTTGTATCCGAAGTGATAACGATTTTTTGCAATTTATACTTATTGTTT
AAGTGCCGTTGGAAGTGATTATTCCATTTCAAAACGAGGCCTTTAATGGT
TTAGATACCTCGAGATAACTAAATTTTAATGCACAAGACCTTTGAACTCA
ATGCGCTTTAAGTGAGCACTCTTGTTTGCTACAATGGGGAAACTCCTTTC
AAGTGAACTAGTCTTATTATGGAGACATGGTTTTTAATTAAGAATATTTG
CTAGAATCAATGCTGAAAATAAGTAAAATTGTTAAACATTGATGACGTCg
ccataatttttttatttaaaagatcaCCAATCACGTATCACGTATATGAT
TGGATAATTTGGATAATTAGGTCTGAAGTTATCagcatttgaaaattttg
atttttaagcggttttatgtcatgtttcacaataaagtcataaaacctga
tgtACGCATATACTCTTAAGCCATGTGTCCACTCCGGATAATTTTCAACG
GATCGGTACGGTTCGGAacgttttctatttttttaaggATTATCTTCGAC
CCAGTTACCACATATTTTTTTCACGTGAACGGTTCAATTGTTCACGTGTT
TTTGGTCCAAACGGATAGAaaaaaagttggattttttcaacttttttttg
cgaTCCGGGCCGGATCGAAacggttcttttgttttgaattaaaaGGGAAC
ATCTGAAGGACATTAAAATAATTCGATTTCTTTTGTATGAAAGTTGTAAA
CAAAAAGAATCTACTTTTAAAGCCATGTGTCCACTCCGGGAAGTTTGCAA
CGGATCGTAACGGATTGGAAACAAGAAGAAAAGGGATCTGAACTGTTTTA
CAAATTCCACTTCGGATTCTTTTAAAGTAGTTTTTCGTCGAGATGCAGAC
AAAAGCAGCAGCGTGGTAaattctacccccccctggggcgaatagggtta
aagcaaatgaaattcaattgtgaagttttttttctgCTTTAACGTTTACA
GATAGCAGACGGGGATGTATGTAGGAATATTGCGATACCAATATACATGA
TTTTCCCTCGACTTTTCACTTGTCCAACCACAGAAACACCTAACTTCAAG
ATTGGTAAGTTTATAATAACCCCTCCGTTTATATTGTATCTCCATATAAT
ATATGAACCTcctttaaatattcaaaaagcTTATTGCGTTGCTATTTTGT
TAAGGAATGCCAAGTTCTTTCACTTATGAattttatgatatagataaagt
ATTGTTAAACCTCCCTAAAAGCCAAATTTTATCTGGAGAAAGTTCTACCC
TCCTACAAAGCCTTTCTTGAAATTTGGCCCCTTTTATCCATTTGGCCACT
GGCACCATACGAGATGGCTTGTTTCTTTGGTCCTGTACCGGTAGGCGTAG
GAGCGCCGTGACCCATACCTCCCTGCCTTTTGACTCCGCCCGAATATAAT
ACGAGACGAGATTGTCACTTTGTTCTTTATTGGGGCGTGAACACGCGTTT
GAAATCAGAAACGATTTGAAAATTATAAGTTACAGATTAATGACATTCAC
TGAGATAAAGTGGCAAGGGAAGTATGAATAGCTTCAAAATTGTTCTCTTC
CTTTTGAGTTTcgcattctttcattttctcatctttttttgttttttttc
cctTAGAATTTGAGATCAACATTGTTGTTGTGTTTTTGGATGATCATTTG
GTGACAGAAAATTTCCCTGTCAAACTATacagatgatgatgattttatGA
TATTCTTAAATAATTACTTTATATCGTATTTCCCTGTTAGTAATATGAAT
AATTTCTTCACAAAAGGTCGTTTCAGGCGTAATAAATCAAGGGAAACAGA
TTAGGCCTTAGTGGGTTCTGTAATCTATTTGGTATTTCGCTATTATCTTC
ATAATTTTGGACCTCAACATTAAGCCGTTACTAAATTATTGCCTCTGCAA
ACTAAATTAACTTTATTTTAATGTATGCAAATTGCCTGATAgtcaaagtt
tgaaattttggtaatcAAGTCACTTTTTTAGACCTGAAGAATCAAACCAA
TATATTGATACCTTTTAATAccattctttatttttgtattatttgcAAGA
ATGGTGGGATTTTGTTGTCCCTGTCCTTACTACAGAGACTCGTAGATTCG
TAGATGTCACAACGCCTTGTAGCCCCGTAAAGGGTATTTTGACATCATTT
GATCTCTTAGTTCTATATTTTAAGTGTCCTGCTGCCTTTGAAAAGCAAGG
CTCCTTGGAGGATAATTCCCCCGCATCTTTTTAAAACACGAGatacaatt
ttttataagaattaattATTATAATACAAGATGTAAATAATGGAAATTag
aatttattattttgaatagcttttttgtttttttcttcttttctatgttt
ataaaatttatattttctgtTTCACTGTCAAGTCATGGCTTGACGTGTTA
AGTAAATCTTGTATGTCTGATTTGTGTGGGTAAAGTTATTTAATATCGCA
TACGATCTTTGATTTGAATTGGTCTTCAAGAAtctatttttataatttat
tacagctaaaattaaaaaagaagcgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031669XLOC_031669Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049977-exon-scaffold_167-1491911889:1610448..1610597TCONS_00049977-exon-scaffold_167-1491911889:1610448..1610597Clytia hemisphaericaexon
TCONS_00049977-exon-scaffold_167-1510915933:1610448..1610597TCONS_00049977-exon-scaffold_167-1510915933:1610448..1610597Clytia hemisphaericaexon
TCONS_00049977-exon-scaffold_167-1575043694:1610448..1610597TCONS_00049977-exon-scaffold_167-1575043694:1610448..1610597Clytia hemisphaericaexon
TCONS_00049977-exon-scaffold_167-1491911889:1610895..1610917TCONS_00049977-exon-scaffold_167-1491911889:1610895..1610917Clytia hemisphaericaexon
TCONS_00049977-exon-scaffold_167-1510915933:1610895..1610917TCONS_00049977-exon-scaffold_167-1510915933:1610895..1610917Clytia hemisphaericaexon
TCONS_00049977-exon-scaffold_167-1575043694:1610895..1610917TCONS_00049977-exon-scaffold_167-1575043694:1610895..1610917Clytia hemisphaericaexon
TCONS_00049977-exon-scaffold_167-1491911889:1612249..1612351TCONS_00049977-exon-scaffold_167-1491911889:1612249..1612351Clytia hemisphaericaexon
TCONS_00049977-exon-scaffold_167-1510915933:1612249..1612351TCONS_00049977-exon-scaffold_167-1510915933:1612249..1612351Clytia hemisphaericaexon
TCONS_00049977-exon-scaffold_167-1575043694:1612249..1612351TCONS_00049977-exon-scaffold_167-1575043694:1612249..1612351Clytia hemisphaericaexon
TCONS_00049977-exon-scaffold_167-1491911889:1612904..1613824TCONS_00049977-exon-scaffold_167-1491911889:1612904..1613824Clytia hemisphaericaexon
TCONS_00049977-exon-scaffold_167-1510915933:1612904..1613824TCONS_00049977-exon-scaffold_167-1510915933:1612904..1613824Clytia hemisphaericaexon
TCONS_00049977-exon-scaffold_167-1575043694:1612904..1613824TCONS_00049977-exon-scaffold_167-1575043694:1612904..1613824Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1610448..1613824 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.94125	10.9602	3.61853	2.4264	12.7357	9.52822	8.07909	8.42795	6.71761	5.54723	5.45704	4.83082	4.13154	3.67061	3.44593	3.76366	2.96521	3.45369	2.40482	3.79467	4.02735	4.21668	10.8283	9.05841	4.12523	5.5397	6.84407	3.67836	7.77188	6.90315
Blast
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BLAST of TCONS_00049977 vs. Swiss-Prot (Human)
Match: DSCR3 (Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.897e-37
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 3 
Query:   84 RDCLLNLYCSFSSGCAEGYAKDATEIQNLQIADGDVCRNIAIPIYMIFPRLFTCPTTETPNFKIEFEINIVVVFLDDHLVTENFPVKLYR 353
            R   L L    + GCAEGYA+DATEIQN+QIADGDVCR +++PIYM+FPRLFTCPT ET NFK+EFE+NIVV+   DHL+TENFP+KL R
Sbjct:  207 RSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVVLLHPDHLITENFPLKLCR 296
The following BLAST results are available for this feature:
BLAST of TCONS_00049977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DSCR36.897e-3768.89Down syndrome critical region protein 3 OS=Homo sa... [more]
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