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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004933 ID=TCONS_00004933|Name=TCONS_00004933|organism=Clytia hemisphaerica|type=transcript|length=2226bpRun BLAST on NCBI protein sequence of TCONS_00004933-protein >TCONS_00004933-protein ID=TCONS_00004933-protein|Name=TCONS_00004933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=593bp MNKPVWFLVFLCVAGVAQGLVVTGVAFTILTSIEKQFGFSSSHVALFGTVRun BLAST on NCBI transcript from alignment at sc0000049:714228..753412- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004933 ID=TCONS_00004933|Name=TCONS_00004933|organism=Clytia hemisphaerica|type=transcript|length=39185bp|location=Sequence derived from alignment at sc0000049:714228..753412- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:714228..753412- >TCONS_00004933 ID=TCONS_00004933|Name=TCONS_00004933|organism=Clytia hemisphaerica|type=CDS|length=17790bp|location=Sequence derived from alignment at sc0000049:714228..753412- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004933 vs. Swiss-Prot (Human)
Match: SO4A1 (Solute carrier organic anion transporter family member 4A1 OS=Homo sapiens GN=SLCO4A1 PE=1 SV=2) HSP 1 Score: 351.673 bits (901), Expect = 4.216e-109 Identity = 221/655 (33.74%), Postives = 344/655 (52.52%), Query Frame = 2
Query: 317 QQPSLPLWLEQTDTQTLTIYEQTCXNPHYRYGWSKLTPKLLQFMNKPVWFLVFLCVAGVAQGLVVTGVAFTILTSIEKQFGFSSSHVALFGTVYDTAYGIFCVFIGYVGHR-HKPRFLGYGLIIMACGAVLTSVPKYIIGTYDVGTERDTDFCRFSVTSTHTPICGGSAEWY--YTLIFLAGNAMIGIGATPLYVLGPSHLDEITHRGQNALYTGIFYACAALGPALGFIIGLPILNTWVDLEQPANSNLTPEDRNWVGAWWIGYLVGAVIMLLPAAPMLGFPKLFPNAEKVKQAKS----ELEDTIEEDKNLNHNFK--------SVWPATKSLLKNIPFVCICLASATESLAIGGFSTFFSKFVETQFHVTSGSSSLYSGVIIIPXXXXXXXXXXXXINRYKWNCKQILRAASMMAFVAAVCVASTLIGCKGREVVGGDLPYANS----STISLQSGCNEYCQCSIRYYKPVCSVVDQQTYFSPCHAGCSNNHTVTIDGEKHFQNCSCVASLVKDG-------RCTPECNLFPLFFVCAFLMMFFTFMNNVPMLMATLRVVPEGQGSFAMGFQQIFVRFLGFIPAPTMFGRLIDESCKLWHKEECTGETTSCLEYKNKDFRNYLFAMGLVIKVIGLIFTLAAYKVYKLPDQTS 2203
+QP LW E+ + GW P LQ +N P L FLC A QG+ V G T++TS+E+++ S L + YD A + F+ Y G HKPR+LG+G+++M G+++ ++P + G Y+V + C + +C S Y L+F+ G + G+GATPLY LG ++LDE + +Y IFY A LGPA G++IG +LN + ++ + + LT E WVGAWW+G+L A P+LG+P+ P +++ ++ +L+D+ + + N +F S+W LLKN F+ +CLA ATE+ I G STF KF+E+QF +++ ++ G +++P GG FLGGF +N+ + +++ V+ + + + C + G Y S ++L + CN C C +Y PVC D YFS CHAGC +DG+K +++CSC+ + G +CT C PL V F+++FFTF++++P L ATLR V + Q SFA+G Q I VR LG IP P FG +ID++C LW +++C G+ SCL Y+N Y+ MGL+ KV+G++F A +YK ++S
Sbjct: 56 KQPLCQLWAEKHGARGTHEVRYVSAGQSVACGWWAFAPPCLQVLNTPKGILFFLCAAAFLQGMTVNGFINTVITSLERRYDLHSYQSGLIASSYDIAACLCLTFVSYFGGSGHKPRWLGWGVLLMGTGSLVFALPHFTAGRYEVELDAGVRTC----PANPGAVCADSTSGLSRYQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGPAAGYLIGGALLNIYTEMGR--RTELTTESPLWVGAWWVGFLGSGAAAFFTAVPILGYPRQLPGSQRYAVMRAAEMHQLKDSSRGEAS-NPDFGKTIRDLPLSIW----LLLKNPTFILLCLAGATEATLITGMSTFSPKFLESQFSLSASEAATLFGYLVVPAGGGGTFLGGFFVNKLRLRGSAVIKFCLFCTVVSLLGILVFSLHCPSVPMAGVTASYGGSLLPEGHLNLTAPCNAACSCQPEHYSPVCGS-DGLMYFSLCHAGCPAATETNVDGQKVYRDCSCIPQNLSSGFGHATAGKCTSTCQRKPLLLVFIFVVIFFTFLSSIPALTATLRCVRDPQRSFALGIQWIVVRILGGIPGPIAFGWVIDKACLLW-QDQC-GQQGSCLVYQNSAMSRYILIMGLLYKVLGVLFFAIACFLYKPLSESS 696 The following BLAST results are available for this feature:
BLAST of TCONS_00004933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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