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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049990 ID=TCONS_00049990|Name=TCONS_00049990|organism=Clytia hemisphaerica|type=transcript|length=299bp
AGAACattccaaaacaaaatggctgctcGCTGGATGCCTTTCGAAAAATA
ACAAGAGGTGAAAATACAACTGTAGAATGATTGCTGGGAGATTTTTTGCA
AACAACTAGCAAAGAGTTCGAATAAATATGAGTGCTGATTCAGAATACCA
aGAAAGCCTCAAAATCAAGCAGGAGCAAGATGAGGAGAGAAGGGGACGAG
AACATCAACAATGGATGGAAAGAGAGCACGGACAAGAGCATAATACTCAA
AGGAGACCAGAAGAGGATGAAAAACAGCCTCATAGAGAGGAAGCCGAGG Run BLAST on NCBI transcript from alignment at scaffold_167:1698945..1705548+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049990 ID=TCONS_00049990|Name=TCONS_00049990|organism=Clytia hemisphaerica|type=transcript|length=6604bp|location=Sequence derived from alignment at scaffold_167:1698945..1705548+ (Clytia hemisphaerica)
AGAACattccaaaacaaaatggctgctcGCTGGATGCCTTTCGAAAAAGT
AAGTGTGCAAAAATGCTCCTATCTGTATGACTGTTTGTTTAGAGGTTTCA
TATGACATGAAGATCTTTGATTTTAGAGGTTCCTTCATGTTTTGGAGCAA
ATCTAAGGGAAtcagtaaaataattttgttttgatcataATAAGAAAATA
AGGGTGTcaaaaattagaagagggatgtatGTCGGATATTAGcaattaga
ccaacttacggtatagcTTCGTAAATAGTGCTGTGTACATCAGTGgttag
tattcaattatcatcccttttattttcatttctgaaaCATTTTTTCCCAA
TGTGttagacagttacatcaatatgccttcttacctgtctttaaaaatat
aaataaaagtaatcaccgaaaaggacgcgaaaaaaaaagacataagtgtg
agaacagagtaatcaaactcgttagaaaaagtaccattagaagtcataaa
aaatcaacctgaataaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
ctgttttatttaccccctggtgacttaacaaaagagacttaactcgatgt
tacaatccaattattgaaagtttgtctcggcctttttataatgagcgaga
cattcgttctctgattacgcaattttcatattgacatttttgaggcattt
tgatgtaactgttagACCtttcagtgaagtcaagtttgaaattattctgc
attagaaaaatggttaaaagcagtcaaaatgCAATTTACctttacctcct
gagtttgtctttgttatgctaaaatataataaacctttgtcatgctgtgt
aatagaccttttcgcctttccatctgccatcttgaattgtatgcaaaaat
agagtagaggaacgaaaaagccgtggttggatttagttggaatgtatgca
aaacatatgcaagtttacacaaagattaaaaagacaacaaagcatcttat
aaataaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Natcttataaataaatattataatcattagaacaataaaagatggaattt
cttaatccaaaaagaaatattcacagaacaacaaaagccttttataaatt
tattcttaaagacatagcatattctgttttcatgccattaagaaattccg
agaagacggagtacacacatcaaaccttcaaaacacgcaaactgaaaagc
agtaattatgacgtcacacattatctatctatatatttcatactaAAAGG
TCCTAGGACCCCATTATCCGTACatttgtttgttaaaaaaaatgaaaaat
gaataaataaataaatgaaatgtTAAAGAGCAATAAAATAATcattatca
ttgttttgatttgatcatttggcggctctattcccaggagaataatttac
agtcagccgaataaggattattttttaccttcgctggtgatttttcagtt
tgagtttagGTATGTATAATGTTATggatttttgaagtgcttgttctaag
agatgagcgaatatatttattttaattttcaagagaagcaaatttaatga
ttcttctacaagattacacttaatataatgccaattatgcatgtaagttt
tatattaatactttctttttgcatatgttttgcatacaattcaatatggc
ggatggaaaggcgaaaaggtctattataaaAATCTCATCACTACCGTAat
tggtcctaaatccgacagcccttcctaaatccgatggggtctttcaaaga
tacaaactaaaataaaaacaaaccttttgctgtgacgcaatgaagatacc
attaccaaagtgtcaactagactgagagatttgatacactgaaccaattg
aaccaaaacattaattgcttcttatacaaagcATAAttctttattacaaa
attgttactGTAACGTTTTAAACGTGAGCAatggattcagaataatagag
gtaattatttttaaaactcacactttttttaccacattaattgacatatt
gacattttagtcatcttgatagatgttttgtttcgagagttcttgcaata
cagtttattgttcaacttggagagggaataaaattttttttcatagcagt
tatttggggggggggttgaatttaggcagggctgtaggatttaggaccac
tcatggTACTTCTctgccatcttgtttcactttaaataccgtgttttaaa
attccttagctacattatatgtacggaaaaggttttctccaggttttctC
AATCCCGGGATGAAATTACAAGGGCGGTTCCGCCCGCTTAtagcaataag
caaaaagctcatCCCAGCTTTTGAAAAAACTACTTAAAAGCACTATAGCT
CTCACCCAacaaaattgtcaattttgaaaattaaatatacAGGAATCCAT
TTAAAATTTAGCTTTCAATGATAACGtagtcgtctaagaaaacagctata
ttattttttagaatcttccttacaatctagttttcatatttatagaaact
agattgctgacgtgtggaaaagAATGTCGGCATGACtgatctttttgttt
tgataataacatcaaagcggaaattaattttcttctcgtttctttctttc
ctttttctttcttattagtTCACGCTTTCCCTCACTACCTACAGCgtgtg
gttagctcaagcgtATAGATTGTCTGTCTCATATTCATGGGATTCCGAGT
TCGATTCTAATGGATGtccaattttccaattcttgattttgtttttgtga
tactctcatcactttaattttgaatcacATTTTCATTAGAGTGAAGAGAT
ATTGACGtgttatgtaatgttaattgctattattaattacgcgttcaatt
cgaatctatgatctgttccctccTAGTGAGGAGTTTAATACCCTTATAAC
AACTGTACTTTTATTCAAATAAcgaccacgcaagaaagataagcaaacga
ttggatcaagtgtcaaacattttgacccggaaatcaattattattctgcc
tttgaaagaagttatttgacaattctcttacaaagaattgctcgctcact
cgctggctgaaagtgaaagtgaaagtagtgaaactgaaactgtcagtcaC
TAAACACAGGCGCAAACGTCAATacccgttcttctatatctcagccttga
ataatcgcttgtggcaaaaaaaagattgaagaaaaaaaaacttaaaaaag
ttcttattaagtgatgctatcatagcttatctaaaccttagacagagagc
ggaggtaatatatgctagctacttgtttgattgaccttcattataaaaga
gggttaaaaaaagaaaattgaagaattgaaaaattggacatCCATTGGAA
TCAAACTCGGAACCCTTCGCTTATGAGGCAGACaatctaaccgcttgagc
taaccacgctttgtAAGTGGCGAGGGAAAACCTGAACTGATAAGaaataa
aaaggaaagaaagaaacgagaagaaaattagttcccgctttgatgttatt
atcgaaacaaaaggatcagtcatgccgaaattcctttccacacgtcagca
atctagtttctataattatgaaaactagattgtaaggaagattctaaaaa
ataatagctgttttcttagacgactaCGTTTGATATATAACATCATGGGG
TTTTGTGAATGTGCTGGAAAGATATTGGTTCTTGAATGGTCAATAAATGG
CCCATTTTGGCCCAAAATTTGATGAAACAGTGAAAATCACAAATATgaat
aatatattttctcatCTTATTTCAACATgttgtcatcaaaatttttatta
aatcttTCCTAAGGCATGTATTTTCCAAGATCAAAAATCATATACTGAAA
AATTAGCActgttttaaaaaaatggatatttttggaaaacaatTGGAATG
AAACATTAACAAatctgttaatatttttcccTTGACTATTTCTAAGGTAt
gaataagtttgaaattaaagTTTGATAGCTAAATATCATCAGATGACTTG
TTTGAACATGTCATATAAATATCAAGTTGATTGATGAACAAGTTTTGgag
aaaagataattttaaaacaccgACCAGGATTTTCTGTCACGGCGCAACGC
AAACCTAAAAGTGCACTAAAAGATTACCTTGGTGTTTTTAAGTGAATTCT
TTTAGTGATTCTCAACAGCCCTATAGGTctaatattttaaacatttaaaa
aatgaaaaaattctgctttgttcaattttttttttaattatgattTTCCG
TCATGGCGCAACAAAATTTTAGACCCCCAAAAAACTTCATTGGACAACGG
AAATGACTTAAACTCTTCAGTAACTTCCAAATTATCAATATTTAAAACAT
TTGGTAAAGTAAACTACTTTGTAGCATTTATATGcccattttgtaaaaat
cttgatttttgttAACTTTCCAGGGATTTTAGCCCAGAAATCGGAAATTT
GGTCATAACTTTTCAATAGAGCATGTTCCTGCTCtgattttttcacaaat
tattCATGAAATGATATCCTTTAtgtctatataaaaatttttgactttct
gaaaacttcattttttgccatttttcagactttttgggacaagctttttg
cttattgcttTATTTTCCTTTCGATGTTGAGCCCCGGGGATACTTAAtaa
taaagagattttaagattaatgttgaaatgtgtattttttcgatactcaa
caaaaaataaggtggttttaaacaaatctttgacaaattagcgtttcttt
ctgttctaatgcAAATCACATTGAAAAAAGAGTATATTTCCGCcgttact
ttcactttcactttcgtgttacgcgaatctgattggatgaataccgctcg
ctaacaaattctgattggctgtaagtctttagattctggattctgattgg
attatTTCCTGTGccacggttgaattttgattgaggTACAGGGTACCcat
tgctaagaccttatgttatgTTGAAAACAAAACCGATTATGGCAAAAATT
CCTCAAAAACAGGGATTTttgtaatacctcaaatattgatacttgactgt
actgcCTTTATATCTGTAAATATGGATGGCAggtttcattgaaaataaac
aaattttttatGGTTTAAGCCAAATATAATATTCTGGGTACTGCATGGTa
gatataatattttttcttgtcaTCCTAACCTATAATCTCTCTTAATACCT
TGGATTCACAGTAACAAGAGGTGAAAATACAACTGTAGAATGATTGCTGG
GAGATTTTTTGCAAACAACTAGCAAAGAGTTCGAATAAATATGAGTGCTG
ATTCAGAATACCAGTAAGTTTGTTTCGTCATAACCTTGCTCTTTACTGTA
TTTAGTCTATGAAAATGGACCAATGTTTGAATATTTTAGGTGTTTTATGG
AAATGATTACTTACAATCACACCACATTAAGTGTAATTCCTAAGAATTTG
ATGAgtggttttatatttttcaagtttgaaaGGACTAGCTGATAAATAGT
TTCACTAATTTTACTATATTTACCTCATTTTCCTCCTTTATTGTTCTTTT
AGTCACCTTTAgattattttattgttttcagaGAAAGCCTCAAAATCAAG
CAGGAGCAAGATGAGGAGAGAAGGTTTGAGAATCTACTATTTGTCTTTTC
TATCCCCCCCCCCTTCAGACcctgttttttatcaaaatctacCTTTATTA
AAAATGGATATATTTTTGTGGTTAATAAAACTCTTGTATGTACgtaattt
ttgtgaattttttggCTGAACTTCCTGAAATTTTCTATCATTCATAAATT
GCAAtataaaaaatcaggaaattctATACACAACATTATTGCATTATGAT
CTCTTATGATAATGTTTTTGTCTCCTCTTTGTCATTATTTCCTCATCCAA
TATAAGATGCTGTAAtgatttttcttgtttcatCATCATATGTCTTATTA
ACTCAATCACAAAATTTGATACATGCTGTGCTACAAGTTTCCCAGGAACT
CACAATCTCGCAAAACACGTTTGTTGAAAAAAAGTCACAGTTTGCAGAAA
AATTAGTACTGGCAATAAACACTTTATTCAAGGGTTCAATTTGGTTTGCT
TTTCTaaactttaatttaaaaatataatttcgaaCTGTCTTAGGTAATCT
ATTTGTTTGTTATTTGGAAATCGATTATTTATATAACATATAAacaatta
gaaatattttattcatGATTGTTTTGTGatgatttattttgattcaGGGG
ACGAGAACATCAACAATGGATGGAAAGAGAGCACGGACAAGAGCATAATA
CTCAAAGGAGACCAGAAGAGGATGAAAAACAGCCTCATAGAGAGGAAGCC
GAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049990-exon-scaffold_167-1491911889:1698945..1698992 | TCONS_00049990-exon-scaffold_167-1491911889:1698945..1698992 | Clytia hemisphaerica | exon |
| TCONS_00049990-exon-scaffold_167-1510915933:1698945..1698992 | TCONS_00049990-exon-scaffold_167-1510915933:1698945..1698992 | Clytia hemisphaerica | exon |
| TCONS_00049990-exon-scaffold_167-1575043694:1698945..1698992 | TCONS_00049990-exon-scaffold_167-1575043694:1698945..1698992 | Clytia hemisphaerica | exon |
| TCONS_00049990-exon-scaffold_167-1491911889:1704406..1704507 | TCONS_00049990-exon-scaffold_167-1491911889:1704406..1704507 | Clytia hemisphaerica | exon |
| TCONS_00049990-exon-scaffold_167-1510915933:1704406..1704507 | TCONS_00049990-exon-scaffold_167-1510915933:1704406..1704507 | Clytia hemisphaerica | exon |
| TCONS_00049990-exon-scaffold_167-1575043694:1704406..1704507 | TCONS_00049990-exon-scaffold_167-1575043694:1704406..1704507 | Clytia hemisphaerica | exon |
| TCONS_00049990-exon-scaffold_167-1491911889:1704776..1704817 | TCONS_00049990-exon-scaffold_167-1491911889:1704776..1704817 | Clytia hemisphaerica | exon |
| TCONS_00049990-exon-scaffold_167-1510915933:1704776..1704817 | TCONS_00049990-exon-scaffold_167-1510915933:1704776..1704817 | Clytia hemisphaerica | exon |
| TCONS_00049990-exon-scaffold_167-1575043694:1704776..1704817 | TCONS_00049990-exon-scaffold_167-1575043694:1704776..1704817 | Clytia hemisphaerica | exon |
| TCONS_00049990-exon-scaffold_167-1491911889:1705442..1705548 | TCONS_00049990-exon-scaffold_167-1491911889:1705442..1705548 | Clytia hemisphaerica | exon |
| TCONS_00049990-exon-scaffold_167-1510915933:1705442..1705548 | TCONS_00049990-exon-scaffold_167-1510915933:1705442..1705548 | Clytia hemisphaerica | exon |
| TCONS_00049990-exon-scaffold_167-1575043694:1705442..1705548 | TCONS_00049990-exon-scaffold_167-1575043694:1705442..1705548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1698945..1705548 + |
Blast
The following BLAST results are available for this feature:
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