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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050196 ID=TCONS_00050196|Name=TCONS_00050196|organism=Clytia hemisphaerica|type=transcript|length=1651bp
GAGACATTTGCGCAATCTTATCACTTCCAAAATGTAAATAACAAGCAAGT
GAGATTCTATGCTGAATTTAAGAACTTTTGACTGGCGGAATGTAAAACTG
TAGCccaaaaccactcaaaacgtgCTAATTAGCACACCACACCATAAAAA
AACGCTTGTTCCCCGCGCAAAAAATATGGACTGTATCAGGCTGTTCTgtg
aaagaatgacaaattttagctcGTGTTCCCAAAATTTTCTCTCTGCACGG
CAAATTAATGAGGAACTTGCCgagaaattacttgaaatttagGTCACTGG
TGCAAATCTCAATGAATAAAAAGTTTCTTTAGTTTTCCGAACGCAGATCG
AAGCAATACCTGAAAAAATTTAGGTCAAAGTGTCTGCTCTCCTATTCAAC
ATACCTGATACTCCTAATTAGGAGAGGTATCCTAATCCTTAACTGTTTGT
GCAGAAACCAAGATCAATGACGGCTATTCCACAGCAGCAATGGTATATAT
TCCTTTCCTTAGAAAATCTCTGCTTGTTGAAATGACAGAGCATTCATTAA
AAGTGCTTTAGTTCTGCCAGACTAAAACTGATATTCAGCTTGAATTACTA
TTGATAAAAGGTGGTTTGTTGAGTTTTAAAGCTAACATCATATAAATGGT
gggatttttaaaattttagggCCCAAGGAGTAAATAATTTATGAATATAA
TAGTtcaattttgttgttttaacATCTAGAAATCAAGATAGCTTAGGTGT
TTCCGCCAAATTTTATTCCAGCTAAACCCGGCCTAAAAAATTGAAACCAA
CGTTCCCATTAATTTTTACATACCTACAATTTCTATGTAACAATTAAAAT
TCATACACATGCAACAAATATTCAGTTTGAGAGATTTTTCAAGtggtttt
cataaaaatttggtTGAGGAGGGTGTTGAAAAAGGCATGAAACTGCATAA
ATAAAAATGTAACTACTTTTTGGCCAAGAAAACTTGTGCAAAAGAATAAA
CTATTTTAAGTCATGTGATTAAAATTTTGCTCGCACTTAAATTTGATGGT
AACTTAATTTAACTGATATCTTGTCCAAATCCATCAAGtttctttccacc
aaaaattCTTAGATTTGCATTTCTCCTTCTGTCTCAGATCTAAATATCAG
CTTCTTAAACTCAAATATGTCTCTTAATAAAACAAGTAAAGCAAGCGTAA
ATTTAAGCTGGGGATAATTTCCGATATAGTCAGGCAGCCgaggaaacaaa
aaaaatatggaCGGGGTGCAAACAATCCAAAACCAAATTAAATCGAAAAT
ACACACCTCAAATATCTAGAAATCATCAACAAGACCTATCCTAATTATTT
ACCTGACGTCCCCGGTAATATTCCAGGTCCCAAAATGATGTCATATAGGC
CTAAGCTAACTAAAAAATTTTCGTTCACAAACATGatcatattatatacc
aaaagAAGCGTCTTCAAACGTAGATTAGGAAAAAGATCAGTAACCATAGG
TGAAAATTTCTCTATAAAAAGTTACAAAGGTTTCTTTAACAACCGCAACG
TTACTTTTACCTGGTCCGAGaggcaaaaaatctgaaaattcaaactctta
aaaatgaaaacccataccaccattcgaaagctctcaaaaattgatataga
a Run BLAST on NCBI transcript from alignment at scaffold_167:1743013..1744663 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050196 ID=TCONS_00050196|Name=TCONS_00050196|organism=Clytia hemisphaerica|type=transcript|length=1651bp|location=Sequence derived from alignment at scaffold_167:1743013..1744663 (Clytia hemisphaerica)
ttctatatcaatttttgagagctttcgaatggtggtatgggttttcattt
ttaagagtttgaattttcagattttttgcctCTCGGACCAGGTAAAAGTA
ACGTTGCGGTTGTTAAAGAAACCTTTGTAACTTTTTATAGAGAAATTTTC
ACCTATGGTTACTGATCTTTTTCCTAATCTACGTTTGAAGACGCTTcttt
tggtatataatatgatCATGTTTGTGAACGAAAATTTTTTAGTTAGCTTA
GGCCTATATGACATCATTTTGGGACCTGGAATATTACCGGGGACGTCAGG
TAAATAATTAGGATAGGTCTTGTTGATGATTTCTAGATATTTGAGGTGTG
TATTTTCGATTTAATTTGGTTTTGGATTGTTTGCACCCCGtccatatttt
ttttgtttcctcGGCTGCCTGACTATATCGGAAATTATCCCCAGCTTAAA
TTTACGCTTGCTTTACTTGTTTTATTAAGAGACATATTTGAGTTTAAGAA
GCTGATATTTAGATCTGAGACAGAAGGAGAAATGCAAATCTAAGaatttt
tggtggaaagaaaCTTGATGGATTTGGACAAGATATCAGTTAAATTAAGT
TACCATCAAATTTAAGTGCGAGCAAAATTTTAATCACATGACTTAAAATA
GTTTATTCTTTTGCACAAGTTTTCTTGGCCAAAAAGTAGTTACATTTTTA
TTTATGCAGTTTCATGCCTTTTTCAACACCCTCCTCAaccaaatttttat
gaaaaccaCTTGAAAAATCTCTCAAACTGAATATTTGTTGCATGTGTATG
AATTTTAATTGTTACATAGAAATTGTAGGTATGTAAAAATTAATGGGAAC
GTTGGTTTCAATTTTTTAGGCCGGGTTTAGCTGGAATAAAATTTGGCGGA
AACACCTAAGCTATCTTGATTTCTAGATgttaaaacaacaaaattgaACT
ATTATATTCATAAATTATTTACTCCTTGGGccctaaaattttaaaaatcc
cACCATTTATATGATGTTAGCTTTAAAACTCAACAAACCACCTTTTATCA
ATAGTAATTCAAGCTGAATATCAGTTTTAGTCTGGCAGAACTAAAGCACT
TTTAATGAATGCTCTGTCATTTCAACAAGCAGAGATTTTCTAAGGAAAGG
AATATATACCATTGCTGCTGTGGAATAGCCGTCATTGATCTTGGTTTCTG
CACAAACAGTTAAGGATTAGGATACCTCTCCTAATTAGGAGTATCAGGTA
TGTTGAATAGGAGAGCAGACACTTTGACCTAAATTTTTTCAGGTATTGCT
TCGATCTGCGTTCGGAAAACTAAAGAAACTTTTTATTCATTGAGATTTGC
ACCAGTGACctaaatttcaagtaatttctcGGCAAGTTCCTCATTAATTT
GCCGTGCAGAGAGAAAATTTTGGGAACACgagctaaaatttgtcattctt
tcacAGAACAGCCTGATACAGTCCATATTTTTTGCGCGGGGAACAAGCGT
TTTTTTATGGTGTGGTGTGCTAATTAGcacgttttgagtggttttggGCT
ACAGTTTTACATTCCGCCAGTCAAAAGTTCTTAAATTCAGCATAGAATCT
CACTTGCTTGTTATTTACATTTTGGAAGTGATAAGATTGCGCAAATGTCT
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050196-exon-scaffold_167-1491911889:1743013..1744663 | TCONS_00050196-exon-scaffold_167-1491911889:1743013..1744663 | Clytia hemisphaerica | exon |
| TCONS_00050196-exon-scaffold_167-1510915933:1743013..1744663 | TCONS_00050196-exon-scaffold_167-1510915933:1743013..1744663 | Clytia hemisphaerica | exon |
| TCONS_00050196-exon-scaffold_167-1575043694:1743013..1744663 | TCONS_00050196-exon-scaffold_167-1575043694:1743013..1744663 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1743013..1744663 . |
Blast
The following BLAST results are available for this feature:
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