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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049994 ID=TCONS_00049994|Name=TCONS_00049994|organism=Clytia hemisphaerica|type=transcript|length=441bp
ccccccccggcaattaggtttattaaaattttccacccaccccccgttta
tttggtacctaatgttttgattttgtatcccactgcatacggtttgttta
caaatttcctCAGtccttttatgtccctttaagttcTAAAGCAAATGTGA
AGAAGGCTATAGAGAGCATTTATGTATCAAAAAACGGGGTTAAATAAATT
CTCAGGTTTTTATGCAAAAATTTATTACTTGACGATCAATGTTTTGAATA
ACAGTTGTTAAGGCACTTTGAAAGTATAACTTTAAAGAACTCATAAGAAG
CCTCTTTTTAGGGGCTACGTCTCAACTTGGAGGCTTTACCACTACCTCAT
GTAACAGAGAATTCTGCATTGGTAATTCTGTCTTCAGGATAGCGATCTAG
AAGATAATtgttatgaaaaataaattagtagCTGAAAATTA Run BLAST on NCBI transcript from alignment at scaffold_167:1750118..1754110+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049994 ID=TCONS_00049994|Name=TCONS_00049994|organism=Clytia hemisphaerica|type=transcript|length=3993bp|location=Sequence derived from alignment at scaffold_167:1750118..1754110+ (Clytia hemisphaerica)
ccccccccggcaattaggtttattaaaattttccacccaccccccgttta
tttggtacctaatgttttgattttgtatcccactgcatacggtttgttta
caaatttcctCAGtccttttatgtccctttaagttcTAAAGCAAATGTGA
AGAAGGCTATAGAGAGCATTTATGTATCAAAAAACGGGGTTAAATAAATT
CTCAGGTTTTTATGCAAAAATTTATTACTTGACGATCAATGTTTTGAATA
ACAGTTGTTAAGGCACTTTGAAAGTATAACTTTAAAGAACTCATAAGAAG
CCTCTTTTTAGGGGCTACGTCTCAACTTGGAGGCTTTACCACTACCTCAT
GTAACAGAGAATTCTGCATTGGTAATTCTGTCTTCAGGATAGGTAAGTAC
AATCCTCGTGTCTTTGGATTAATAGGAAATGAgagggatttaattttttt
cctcaaTGTTTCCGAAAAGCTACGAATTCAATTAACCTGTTCCCAGCGGT
TTGCCTAAATGTGTGAAGATGCGTAAAACTAACCCTCCTTTTGCTTCGGT
GTGGATTGGCTCTTCTATTAATAATTTGAATAAGCTCTcttttctataag
cataacgtttataagcatactttaatcacagatctgtaaagcccgaaggg
ctagatttgcggcttttatcgaaaagtgaagcttaggtttggaaggattt
cctaccaaagtcacgtgactaaaatattcaatttcaccggtttgaaaGAT
GGGAAATAGCGTTTGctgcctacttttttttatctcgcgctccgaaaaca
ataccctttcccgaattgttatttaggctttttgacttttttgttttact
gTTTGGATATTtctatttagtttcataaaattgtatGTCGCAAAActaag
aaatatgaaaaaagcacttccggttcttgagttattttgatttgaaattt
ctctataaacaatagaatcaatggaaacgaggccggacttatgttttaaa
ttttataagGGATTTCACCGTGAacaaaaacagtcataaaaattgataga
aaaaagcttttgagctcaaattttcagcatGCACTTGTCTTTATAGGAGG
AATNNNNNNNNNNNNNNNNNNAAAAATGAATACAATTGTGCATTTTTgac
tagaaagcatgaaatttggtacagtggtaccttagggggtaagaaacatt
ttaagcctctgacccacttctggaacacctgtttgtgtattttacagacc
agaatgcctcccaggcaagaaaattttttttatcttcacagcatgtcata
tgatatatcattggaaaggttttctcacactgattctaaaaaacatcaca
acatatatctgcaaatggactgggtccgagttatgGGGTACagaagtaat
ttacagaccagtctgcatgcccgaaaattttttttatttttgttccaaaa
catttcatatcatataccgttggaaaggttttttcacactgattctaaaa
atcatcaTGATATGNNNNNNNNNNNNNATGGACTGGGTCCGTGAAATAAG
CCATaggagtaatttacagaccagaacggcTCCCGggcatacaaaaaaat
atttttatctccaaaCCATGGCATATcacataccgttggaaaggtatttt
tacactgattccaaaaaacatcacaacacgcatcaaaatggactgggtcc
gagttatAGGCCATgggagtattttacagaccagaatggctCTTGGCCCA
TAACTCGGACCTAGTCCATTTTCAGATacatgttgtgatgttttttagaa
tcagtgtaaaaatacctttccaacggtatatgatatgacatgttttggaa
caaaaacaaaaaattttttcgggcatgcagactggtctgtaaattacttc
cgtaccccataactcggacccagtccatttgcagatatatgttgtgatgt
tttttagaatcagtgtaaAAATACCTTTCAGACAGTAACTGATATGCCAT
GGtttggagataaaaatattttttgtatgcTCGGGAgccgttctggtctg
taaattactcctATGGCTTATTTCACGGACCCAGACCATTTTGAGATACA
TATCAtgatgatttttagaatcagtgtgaaaaatcctttccaacggtata
tgatatgacatgttttggaacaaaaacaaaaaattttttcgggcatgcag
actggtctgtaaattacttccgtaccccataactcggacccagtccattt
gcagatatatgttgtgatgttttttagaatcagtgtgagaaaacctttcc
aacgatatatcatATGACATGCTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaggcttaaaatgttt
cttaccccctaaagtaccactgtaccaaatttcatgctttctagtcaaaa
acgcacaattgatgcacactttccctggactaataggaggaatacaaata
tatagttttcaatatgGTTTGAAAACCTTCGAAAAATACCaaacaattcg
ggaaaggtgTATTAAAATGCTAGATCCTAtccatcggcacgaaatttaaa
aagtcaaatttttgcttcacttttttttgctggagaaagcttaaagttgc
ctatctagccctttgggctttacagatatatgtgataaactttcgcggat
ttgggtgtcatcttCGAAAATCTGCGAAATATTTCTAGACaatactcaaa
atatgtcaaataagcGCAAATAgtgtgtacacgttttttttttttaagaa
acacacttttaagaaacataaggctcagaatgcctaaaaactaagaaaca
tgctgaggctgagaatgagaaaaaaacattttttgattcgttttttttta
aagaactttttaattcaaccttccatgaggctgattatgtcaaaaagttt
agaaacatgtaagaaacatttaaggctcaaaaggccgatttcttaagaaa
catcgaggctgcttggtaaaactagtttcttaaaaaaaaaacgtgtattt
caacaactaacatgatttgacagtatgaGTCACAAAATCGTAAAAATTTT
GCCACCCgccaaatttttaaagaacttaatcagcgtgtcttttgggtatt
tccctcacttttttcttgtgttggtgggatggagtatgttgcattgcacc
aacgcaaaaaaaaacttctcgtgtcctcAAGCCTTGATCATATAAATAAA
CATGGATTAAGGCTGAAGGTGAGATTTTTCTAAGCATTTTGAGCCTCGAC
CCGACTTTCCGGTAGTGTagtgtaccttaaaggaagaaatttggccagaa
tccgccaaaatttcttttttccgccatccatatccaaattaaattcccgc
caaattaaactttttgaaaatatgatctcttttaaggtgtttttacgcca
ttttaaggataaatatttcagcaaacgccaaatttagttttttcgtccgt
CTGCCAAATTAGATTCcctctaaaaatctttttcggccatccgccaaatt
aaattcccgccaaaatttcttccttttaaaGGTAGGTGAAGGATATTACT
TTTTTGGCATATTTTTCAGATTCTCTACAAAATAGGCGTCAACCCTCCCC
CTCTCTTCGTCACTTTTGTAGTGGCCAGCAATAATTACATGTCCTAATTC
TTTTCATTTCAGCGNCCCTCCCCCTCTCTTCGTCACTTTTTTAGTGGCCA
GCAATTTCAGCAATAATTACATGTTCTGATTCTTTTCATTTCAGCGATCT
AGAAGATAATtgttatgaaaaataaattagtagCTGAAAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049994-exon-scaffold_167-1491911889:1750118..1750509 | TCONS_00049994-exon-scaffold_167-1491911889:1750118..1750509 | Clytia hemisphaerica | exon |
| TCONS_00049994-exon-scaffold_167-1510915933:1750118..1750509 | TCONS_00049994-exon-scaffold_167-1510915933:1750118..1750509 | Clytia hemisphaerica | exon |
| TCONS_00049994-exon-scaffold_167-1575043694:1750118..1750509 | TCONS_00049994-exon-scaffold_167-1575043694:1750118..1750509 | Clytia hemisphaerica | exon |
| TCONS_00049994-exon-scaffold_167-1491911889:1754062..1754110 | TCONS_00049994-exon-scaffold_167-1491911889:1754062..1754110 | Clytia hemisphaerica | exon |
| TCONS_00049994-exon-scaffold_167-1510915933:1754062..1754110 | TCONS_00049994-exon-scaffold_167-1510915933:1754062..1754110 | Clytia hemisphaerica | exon |
| TCONS_00049994-exon-scaffold_167-1575043694:1754062..1754110 | TCONS_00049994-exon-scaffold_167-1575043694:1754062..1754110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1750118..1754110 + |
Blast
The following BLAST results are available for this feature:
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