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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050129 ID=TCONS_00050129|Name=TCONS_00050129|organism=Clytia hemisphaerica|type=transcript|length=4204bpRun BLAST on NCBI protein sequence of TCONS_00050129-protein >TCONS_00050129-protein ID=TCONS_00050129-protein|Name=TCONS_00050129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1023bp MRLLHFWKAFNIRPRSFQKAIVNDSTNFHRKMATFSSMEAVSGEYKHLNGRun BLAST on NCBI transcript from alignment at scaffold_167:1766244..1806210- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050129 ID=TCONS_00050129|Name=TCONS_00050129|organism=Clytia hemisphaerica|type=transcript|length=39967bp|location=Sequence derived from alignment at scaffold_167:1766244..1806210- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:1766244..1806210- >TCONS_00050129 ID=TCONS_00050129|Name=TCONS_00050129|organism=Clytia hemisphaerica|type=CDS|length=27648bp|location=Sequence derived from alignment at scaffold_167:1766244..1806210- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050129 vs. Swiss-Prot (Human)
Match: LIPS (Hormone-sensitive lipase OS=Homo sapiens GN=LIPE PE=1 SV=4) HSP 1 Score: 333.954 bits (855), Expect = 1.733e-95 Identity = 183/496 (36.90%), Postives = 285/496 (57.46%), Query Frame = 1
Query: 310 LNGIFKNVLESSTDNLEFFNQK----QKQDFHSSFQNIINVLDPLQMSLGVITNCCSKFDASPTSKGNGYRXXXXXXXXXXXXXQELSRHIQRSREKIFFRSYHVYMELESYSQVLTRLLTISHLAIVLLDYSDVGNLF--PHDCVVDDMMIDFEKINRECFYGRSFGFQYSDSIRQSLHVIAVAMAAYGDGYQQHNHSLTRALSSMLHSGKYMVNPELRAQRINELTQNANIDFCKAFWGLTEEYGVQHAPLLICPAMAVNLEFEIPPQQLGVQ-TVDKQNEVTVDFPFLNSGYTGIPCRLLSYVLRSGQDSLNKAGSASSSGVSPL--GPKPAQ--KSRYLMIHCHGGGFVAQSSKSHEMYLRYMAKELQIPILSIDYSLAPDAPYPQAVKEVYYAYVWALNNFDKLGTLGEKIVFAGDSAGANIVTAITIQAIKDNIRLPDSIVVAYPPYRLQFLPSPSRILCLMDPLLPVGVLKSCIQAYTGGFKHVASNTN 1764
L + ++++ + DN+ FF+ + Q F + L+ +LG + FD P + NGYRS++ CL + SR++ +R IFFR+ H ELE+Y LT+L + + A LL + G LF + + D + ++ +++ CFYGR GFQ++ +IR L I++ + ++G+ Y+++ L+ A SS+ SG++ ++PELR +TQN ++ F KAFW +TE + + + V+ +PP+ + T D VT+ P ++G + RL+SY LR GQDS + S+G L P+P Q +SR L++H HGGGFVAQ+S+SHE YL+ A+EL PI+SIDYSLAP+AP+P+A++E ++AY WA+ + LG+ GE+I AGDSAG N+ + ++A +R+PD I+ AYP LQ SPSR+L LMDPLLP+ VL C+ AY G SN++
Sbjct: 304 LRTMTQSLVTLAEDNIAFFSSQGPGETAQRLSGVFAGVREQALGLEPALGRLLGVAHLFDLDPETPANGYRSLVHTARCCLAHLLHKSRYVASNRRSIFFRTSHNLAELEAYLAALTQLRALVYYAQRLLVTNRPGVLFFEGDEGLTADFLREYVTLHKGCFYGRCLGFQFTPAIRPFLQTISIGLVSFGEHYKRNETGLSVAASSLFTSGRFAIDPELRGAEFERITQNLDVHFWKAFWNITEMEVLSSLANMASATVRVSRLLSLPPEAFEMPLTADPTLTVTISPPLAHTGPGPVLVRLISYDLREGQDSEELSSLIKSNGQRSLELWPRPQQAPRSRSLIVHFHGGGFVAQTSRSHEPYLKSWAQELGAPIISIDYSLAPEAPFPRALEECFFAYCWAIKHCALLGSTGERICLAGDSAGGNLCFTVALRAAAYGVRVPDGIMAAYPATMLQPAASPSRLLSLMDPLLPLSVLSKCVSAYAGAKTEDHSNSD 799 HSP 2 Score: 88.5817 bits (218), Expect = 1.639e-17 Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 2917 KDPLMSPFLADDETLKCMPPITIVASALDPLLDDSVEFVRKLQKLEKPSELYILEKLPHGFLNFQPFSTEAREGCDLIIACVK 3165
K+P MSP LA D LK +PP+ IVA ALDP+LDDSV R+L+ L +P L ++E LPHGFL E R+ +L + ++
Sbjct: 966 KNPFMSPLLAPDSMLKSLPPVHIVACALDPMLDDSVMLARRLRNLGQPVTLRVVEDLPHGFLTLAALCRETRQAAELCVERIR 1048 The following BLAST results are available for this feature:
BLAST of TCONS_00050129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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