TCONS_00049998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049998
Unique NameTCONS_00049998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049998 ID=TCONS_00049998|Name=TCONS_00049998|organism=Clytia hemisphaerica|type=transcript|length=1860bp
AGTAAGTTTATGTGTCATTCTATGAAAATTCTACATAAAAACATCTGGCA
CAGGGTGGTGTTAAGTTGAGATGGAAGGCGAAAAAAGTCTTCGATATCGA
TTTTTCTTGGTTTGTTTTGATCGTTTGAAGTGTGGCTTTTAAAGAAACGA
ATTTTGGTTCTGTGAAATACTATGAGCAAGTGAGATCTTTCTGGAAATCC
CAACTCTCTTCTCGGGAATTAAGATCGTCTAAGCTCAATAAACTAAGAGT
CATACTTTTGAACTACCTACAATCACTTGGATGAAGTGGGAGAGTGGAAA
TCTCATGAATGCAGAAGAATGGCAAAACCAGGCAGCCAGAACTGAGTTAA
AGTTTATAGGGAGcaTCAAAGGCAAGTGGAAAGCTGCAGACTGCAAAAGC
CAAATGTCCTGTTTGTTGGAGACTCACTTATTCAACGTCTAGAAGATACT
GAGACGTGGGAAGATACAATTAAACCATTGAATGCTGTGAACGCCGGGAT
AGGTGGCGACCGGACTGAACATGTTTTATGGCGACTACAAAATGGCCTTC
TTCAACATTGTCGTTGTTATTTTGTGTGGTACAAATAATCACCAGCATTC
ATCTGATGAAATTGTGGATGCTCTTGAAGCAATCTGTTGGAGTGTGGCAG
ATGTACTGAAAGACACTAAGATCGTTCTTATCGCTTTGCTACCACGTGGA
GAAAAAGACAATCCATTGCGTAATAAAATCTATCAAATCAATTACGGTAT
CGAACAGATTATATCAACCATTCCGAACACTCATTTAATCAATGCTGACC
CTGGGTTTGTTCGTTCAGATGGTGTCATCTTTCCTGAAGACATGGCTGAC
TATTTACATTTAACACGCCGCGGGTATAAGAAGTTTTGTGTCCCCATCAT
GTCGTGTGTGAAGAAGTTTCTGCAAGAAGATGCGAAAAAGGAAAAAGCTT
TTAATAATAGTATTTATACTTTCCATGAGTGAAGATTTGTTGAACAGCTA
CttcgataaattttttttaagcatGTATAAAATCGTAATTAGGNAATAAT
AGTATTTATACTTTCCATGAGTGAAGATTTGTTGAACAGCTACttcgata
aattttttttaagcatGTATAAAATCGTAATTAGGTTTTTAACAGTGGCT
CTATCTCTAAAGATCTAATCTTTAAGCATTACAGAGTCTGGCAAGGGAAA
GACACTTTAAAAAAACTGTATTTGGACTATGCAgcactgcaatgtcttcc
acggacccaatagctgattggttgaaagtgacgtaaaatcaatcaatact
TCACTtgtaaccaatcagctgttgggtccgtggaagacattgcaatggtg
catatcatgaagaCGGACCAAGCTGCAAATGAGGTATTTTCGAGATTACT
TCGACGAAATTTAGTAAACACTTTAATTGATACTTTGATGTCCTCGATTT
CAGCGTTTGCATTTTGTTGACCTCTAACAATCAAATCGATTTGGTATTTG
ATTTTGCAATTTGTTCTGTTTGTTGGGAGCAGATGTATTTAATTCTGGTA
GTCAAATTGTTTTGGCATTTTTATATTAATCAAAACGaattttcttgaat
ttattagataaattttcattttactaaataactaaaaatgacaatataat
tttttgtaACTCTTCGttaatcattttttatttttacatgcaGTACATTA
GAATATTTCTTTAAAGTCTATTTATATCATCGATAATTCATCCATGAATT
TTTAgtatatctttttaattttacgtTATAAATTTCCTTCTAGAAGATGA
ACATTCAATAAATAGTTTGATAACATATATTTCCATTGCTCCAAttattt
aatgttttct
Run BLAST on NCBI

transcript from alignment at scaffold_167:1816804..1838945+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049998 ID=TCONS_00049998|Name=TCONS_00049998|organism=Clytia hemisphaerica|type=transcript|length=22142bp|location=Sequence derived from alignment at scaffold_167:1816804..1838945+ (Clytia hemisphaerica)
AGTAAGTTTATGTGTCATTCTATGAAAATTCTACATAAAAACATCTGGCA
CAGGGTGGTGTTAAGTTGAGATGGAAGGCGAAAAAAGTCTTCGATATCGA
TTTTTCTTGGTTTGTTTTGATCGTTTGAAGTGTGGCTTTTAAAGAAACGA
ATTTTGGTTCTGTGAAATACTATGAGCAAGTGAGATCTTTCTGGAAATCC
CAACTCTCTTCTCGGGAATTAAGATCGTCTAAGCTCAATAAACTAAGAGT
CATACTTTTGAACTACCTACAATCACTTGGATGAAGTGGGAGAGTGGAAA
TCTCATGAATGCAGAAGAATGGCAAAACCAGGCAGCCAGAACTGAGTTAA
AGTTTATAGGGAGGTAGGAAGGGCCACATATATGATATTCCTTTACACAT
TTACGCATTTCGATTTCAGTGAATAGTATCGTGAAggtcagttagtggaa
gtagTTCAATTTtagattgatttttgaaaacatgagcAGTTGGGtggttt
aagataaaaacggcaattattgctcttttcggcaattattgtaggctgca
cacatcccctctgataagttttgatataggggatgcgaattaggctcaca
aaaccgttccgaacttagcaaaaaatctgctaaccaaaaaaagagttgaa
tgatagagaactttgattgacaatttgtcgtcttttgttatcttgagagt
tttgtttgctaattcaattaatttcgataaacaaaaagaaagagaggaga
aacagcctagactaatgttaatttttctttcagaaaaaagaccataattt
gtttacctttattcctGCAGCTCCCCAACATCCAAGCTCTCAAACATCAC
AAgccgaatgaaattactttcgatttcccgtagaaattatgcgatgaaaa
atccgggggtcgaagaatgaagactttttatttCCGAACAAGTTATCTTT
GCTTATATCGAAATATTACTGTTCAATATATTTGCTAAATATaatgtttg
attacaaaaatgctttacactgtatttaaagtttgaaaagtcgattctac
tattctacttagctctttgttttcatgtctaacccccgtctcaaaagaag
tcccagaatcccgagatGTTTGCAGTCTggcgttcaaaacaaaatttctt
tataataggcatttaaaatatcaaatttaaaaataatagtataaaacctt
attttctactgtatagtatttcttctaaaacgaaaaaacaaaatacacta
gaaaaataaagaattcacgagtgttcccagccggcaaaaaaacgtttaaa
aaacgtttaaaaaacgtttttcacaacgtttggaaaacgttttttcaggt
tgtatttgtcgcactttacaacgttttttcacaacgtcaaaaaaacgttt
ttcaaacgtttatagattacgtttttgcaagtcgtttaaaaaacgttgtt
tcTACGTTTTCTTCTTGCCACTTGAAAGACGTCTTTTTGGAACGAATTAT
GGACGTCTCTAGGACGTTTCTGAGATGtcttaattttattaatttcggtA
TGGTACGTTTCTGAGACGACTTAAAAACGTCTTTAAAAGTTATTTAGATT
AGTTTTAACACATCTCTAAGACGTTCTTTGCCAAAATAACTCCTATTCAT
TGCACTATTATGAGAAGGACCGTACacacatttgaattttctttgaatgc
tcTTTTCTATATAATTTTCTTGGTATAAAATTATACAATCAGTATCACAT
TTTACCAAACGAGATACGCGCTGCGCGCGCAAAAAATAAAcgtaatgaaa
taaaaaatctgatcTTCTTTCTCTTCCGTCCTTCCTTTCTGGCATCTTTG
TGATAATCATTCCAAAAACATTTCCAGTATGATTGCTATTCGAAGTGTTA
AAAAACGATATCTTGATTGCGATTTCTTTGGTCTCCTTCACACATTTGCa
aacctgaaaaaataaaagacaaatagtaaatttgatgttttagCTGCGGT
TGAGACGTTGAAAACTCCATTTCTTTCCACGGGAAAAAGAATGCTCCAGa
aggataaagaaaaaacttcttaaatttTATGGCCAAACTTTATGTTTCAC
GAAATGTATTCTACGATTCTACCAAGGACTGTGCTAAATTATTGTCGTTG
AGGCAGGGGTGTTTCCAAGTCAAATTTCAGTAGTTTGAAGTACCAAGCTC
AGTCAGTGATGCAGGGGTATTAACAACAAATCAGCATagttttggaaaga
tagtaTTAAAGTCTTGTTACATTTCATTCACCTACCTTTAATAGCATATA
TTCAGTTCTTTCTGCTGGCGACCACACAAAGTCAGCTGAGGATAGTCGCA
TTAAGGAAACCAATAATACACTCCAGCTTGAATCTGAGGGAaaagaagtt
aaaataaaaagttttaacataaagtttactgaagattatgtaatttttcc
aaggtttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAACA
CGTCTCTAAGACGTTCTTTGCCAAAATAACTCCTATTCATTGCACTATTA
TGAGAAGGACCGTACacacatttgaattttctttgaatgctcTTTTCTAT
ATAATTTTCTTGGTATAAAAATCTACAATCAGTATCACATTTTACCAAAC
GAGATACGCGCTGCGCGCgcaaaaaataaactttaacataaagtttactg
aagattatgtaatttttccaaggtttgctctcaaaaataaatatcatcAG
AAATTAAAACCTGAAATAAGCTACACTGATAAAGCCTCTAAGAATTAACT
TAAatatcaaaagcattttcagtTTAATGTAAACTAAACTACTCACATTA
TCTAGTTGATTTTTGTAAGAGAACCAGCTTCTTCCAGTCTTCGTGCATGA
AACATCCAACTTTTACAGAACCTttactttgtttgatttttgttttgaac
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NNgtactaaaattatttttgagcttttttgcagtaccaccacgtcactaa
atgtcatgatgtctgagattttagtaccgacccccccccctgatatcaaa
actaatttggggatgcatgcagcctacaattattgccgaaaacagcaatt
ttttcaatgacgaaatgctgattcagcaaaatgcgttgtccttttaaggg
caaagatgtcagaggtgtttgaaaatagtaaaattgcatcaagaaaaagg
tttttcggatttttaaaagtgattttttcaatttttcgttgcacagtaac
atgaaaagttctaaaataatatgctaaaagatcctgcatcgatgccgaaa
cacagccagaaagagataacaaaacccccgttggaaatttgtttacatat
gactcgattttgctatctgcatttccaacaaaaaccagttttcggcaata
attgtcgaaaagagcaataattgcagtttatatcttaaacacccgactga
tgAGCCAAGATTTattcttgttatttttttgatgatatcataccgtgaga
tcgggtaacttgcatcagtggaggcaaacatgcatagccctcaaatgaat
gacctgtctgcttgggtaaattaatgcgtgtccaaatttttttcaatttc
tcggaGGCAATtccacccctcctagcataataaattatacctttaaagaa
gcgcattacgatgtagaacatgaaaatcggtgttatttaaatttaggttt
tgccaattttgcaaaaaatcacaaaaaccaaaaaatgctgacgtcagcaa
aatttgttttttaaaataaCTCCAGCttggctaatggtataaacatgaaa
tttggaccaaagttgtaTATAAAGATTGAGGCTTCtcctgaaaatatagg
ccctggaatggtaggaaaggccagatgtcagtctcgcatttttttacata
ttatttTACATTTATATTATTANccctgaagactcttaaaaaaatgccTC
TTAATATCATCGCAGGCagtgaaaattatgaatttcttttgcATATAGAG
GAATATCCTCTAATGTTTTGATCAGTCTATGATCACAACTGTCCAGAAAT
GGACTGTCAATCATTAAAACCAGTTTTTGAGCCTTCCAGTACATGGAGTA
GCCTGTTAAAGCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNCAAAAATGAATTCTCCACGacagatttttga
tatttggtagTTAAAGGATTGATCTTTNNNNNNNNNNNNNNNNNNNNNNN
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NAGAAAATGTTTATGGTCTTGTgtatctgtgcaaaatttcatgtcatttG
GACTTACCAATAAGGAGTTATAGCAATTtggaattctggtctgtaaatta
ccagTCCgtattttagacaaaatttttgaaacttcaaaatgcaatATCTC
GNtcagtcatttgatggctatgcatgtttACAGTGGagactgatgcaagt
tactcgaCTTGACGGTAGTATGGAAAACTCTTTCTTTTGTCCATAATTAG
gtacaaattataaattttaacAAGATAGACCTACAATGCATGGTGCATGC
TGTTTTAATGGACCAACcaacactttcttttgtcattttatagatttctt
ttgtttgtgtCTGAAGAGAAGAAGATTTCGTTTTGGGTAGTCATccattt
caaaaattatcttaGTGTTTCTTAAAAGAGTGTCTTTTCATCCAGCCAGG
ACTTCCTTGgtcttttttatataagtttGCATAGAATAAAAACCTACCTG
ATTAACACAGCTGCATAGTTTGCATGCCCCCTTTTTAATATGTAGATGGA
AAATTTGTAGGAGAACTTTGTATAGGGGGTAGAGATTTGGTAAACTTTAT
CATATACAAATGGTCACAGTCTGTTTTATCCCGAGGATATccatacccct
ctgcaaactatgcaGCTAAACTCTCTGTCAACAACATTGGCTATACTCGT
AGGTTTTAAAACATAAATGTTTTACAAATAATGAACCTCTTATGACTTCT
CtcaaataaatcaatcaaaagCCTTCTGTTAGGTTTCATTCCATATATTT
TTATCCACATGGTGTACTGATGGTTTCCCTAATTTCctcaataattaaaa
attggaactttcctgTGGGTGGGTGCGATTGGGCGTAACACCAATGCAGT
TTGATATTgatattgacatatttaatgatgtcatattCAATGCTGTTTAT
AtttttgtcagcgccgtgcattAAAGTTTTTGGATATTCAAAACCCCCCG
CAAACATTTTGTTCCATAAGTACTCTCTCTCAGAGAGAGTAGAGTAGTGA
ATGCTCTCTAAGTACTGAATAGAGAAGTCCTTCTTTTCATTCCCAATGCT
GTATGATTCAGAATGCTCTGAAATCACAGATGTCCTAGGTTTTTGGAATA
CACAAGATAAGGAAACATAAATCTATTGCCTGCGACTACTGCTTAGATAA
ATGCACCTTTCTTATTATCTTGCACGTgggtaaaggccacatttttggta
cacTGTCCTTTCCGTTACGTTTTTAAACTTATTCCGGTCATAACTAAGAA
ATCAAGCCAAAGTACtaaaaacttttaacttttttttgttctatGATAAG
ATACccctttaaaaaatataatgtgACTATCTATAAATAATTTCTGCACC
TTTGAGGTCCCTTTGAAGTCCAAAtatctcaatttttctttaaaaaataa
taaaaaattgaacttgatcttaatttttttttctctaggGCATAAAACCT
ACTCAAAAAGTTAACTTCATTCGCATTCACAAAAGAGGAGACTTTTGCAT
CAGATTTAATCATGATATCGTGTATCTATTGCCCAGCAagcaaatttttc
taaaatgtacAGTTTGGTACCCTGattttgtcccttccgttacgctagTT
ACTTTTAGTCAAAATTACCTAGTCAAGTTTACTTTTTGGGCCTCTTCTTG
TCAGTTTATCATTGGGATGTTCCCAGATTCCATTTTCATgctctcatcta
atttctaagctcagttttttcaaaaattgttcctGACATGGGAGATGGTC
ACCaaatttgtcccttccgttacgcatGTGTGATTTGGAATATTTAGTCA
ACTGATTCGCAAGAATCATTTTCCTTTGGTGTAGTTTCTATACCCATTGG
ACTACTTATTTTCATAAAAGTATTTCTGATTTAGAATTTGTCTCATGGAG
ATGCTGTGAAGTGAATCTTGTTGTCCCTTCCGTAACgaatgtcccttccg
ttacggaaattttttataaatgctaatatgataaaaattctgagactttt
ttgttttttctgttcaaaaCTAAGGtatttgaagacattgcaatgtgtTT
CAAGCTGAAAAGGTTTGAAACACTTCAATGACATTTGATGCagtttgatg
aaaaataagCAGAAAAGTGTCCCTTCCGTTACTTACCTTATCGGATCGGG
CGGGTTGCCCGGGCCAATGAAACTCGATCCTTCTAGCCGTCTCTATCCAT
CATAGCTGTCTTGAGGTTTTCTGGGGGCAAGTCAGTGTCGCGGGAGATAA
CGTCCAGATACGTGATTTTTGGACTTCCAACAGAACGACGACCATGTCTT
GGGCTCCAAAGAATCAGCTCGCTGACCAGCTCATCTTTGCTTCGGAAACA
GTGGCCTGCAAAACGCAAGCGTCTTTCACAGATTAATGTGGAATTGTAGG
TATATTCCCGTATAGCTGTTCTTTTCTCGGGTGTTGTTGCCATGAGATGT
TTAGAACTGCACGCAGCATCCGTGTGTACGTTCCATCTAGCATCTNGTGT
TGTTGCCATGAGATGTTTAGAACTGCACGCAGCATCCGTGTGTACGTCCC
ATCTAGCATCTTTTCGTGTGCTTTGGTGAGCGTCCATGCGGCTGAGCCAT
ATAGTAAGATAGACTCTATAACAGCTCTGAAGAAATTGCGTTTTAGGTCT
TTACAGAGGTTTGACTTCCATATAACTTGCATCTTATTGAGTGCAGACCA
TGCTTTGGCGATTCTGATCTTGATATCTTTCTCCGTGGAGGAAATCTCAC
TTCCAAGGTATACGAAACTGTCAACGTTCTTTAACGGGTTTCCGTTTGCT
GCCTTAATCATAATGTTGTTAGCTTGATTAAAATTCATTGCTTCAGTTTT
CTTCTTCGTTTGGCTTTCACTCCTTCTAGCAGCCTCCTGACTGTTAGAAT
CTGTCCTTGTGTATATCTATTAGGTCTAAAGCCATTTTGATTTCGTCGGA
GCACTTTCTCTAGTTCTGGAAGGATTCTGTCACGAAGAAGggaattgtaa
atttttgaagcaatgcAGGTTAACGTGATTCCTCTATAGTTGTTAGGGAG
AGATAATTCGCCTTTTTGGGGAAAGGTAGGATGCAACCTTTCGTCCAGTC
cgatattttgttttgttgcaGAAGATAATCATTAAAACGACTGGTCTTCC
ACAATTCTGGTGGTATTCCATCAAGACCAGCAGCTTTGTTGTTTTACAac
tttttaataactttttctaGTTCATCCATACTAAAAAGTCCTTTTTCAAT
AGGAAGTTCATGATCAATCACGTTTTTTATCTCCTCATTGACAACATTAG
GACTTTTCCCCAGTAAATTAGAAAAATGTTCTCTCCACTTGTCGAgtctt
tcattttgactttctCCTTTGAGTTTTGCTTGCGGTGTACCCTTTCGACC
GCTAATGTCGTTCACGATTTTCCAGGCTGTCGCAGATTGCTGTTTGTCAG
TTGCAGTCTTAATCGCGTCAATCTGTTTCTGTATGTATTTTGTTTGCTCG
GAATGGTATGTATTCTCAAGTTCTTTCCTGGCTTTTACGTAATTTCTTAT
ATTGCGCGTAGATGGATTTCTGTTTTTAATTACGTTACGCTTTACGTTAC
GTTACGCTTTTATCACTTAGTTGGTATTTTATGAtagtaccgggtgaccc
acgaaaaagttcggacagtTTTCGGCGTctcgaggccgaacaaatgtctc
aaagtgcttgaaattttaatatgtaGAAATAAGATATTCTAACTTAAagt
ttgagctattactttttaaaattgacccACAAGTtccctacttatgagct
tttaaagtcaaaattcacttttcggaaagagcgaaattacgtcaaaaaag
aggtatcaaattgttttattatcaatcaatcaagcaaGGTCGTTAAATCG
TTAGAAAAGAGCatgttagatatttttattcaattttaaaaaatttttta
gattctttactttCACAGAATTTATTAACAATAAGTTATTCGTTCAGAAA
AGAACCACCACCATACACTTTCTAGCATATTCCAGGCAAACCCACATTCT
CTGTTCTTTCATAAGACGCgacattttcataaagaaggcaaattttgcct
atttgcaaaatatttttgataaaaatatttacaataaatttatataaatc
tacttcgttgttaatttattattttacaaactttaaTTAACTACAACACT
AATCAACGAGGTCGCACACTCGAAAAACACAAtgttaaagataaaaaaac
aattataatttgatacctcatttttgacgtgtttttgcaCTCTCCgataa
ttgaattttgactttaaaagctcataaatgaagaaccactgaaccaaatt
taaaaagtaatagctcaaagtttaagttagagcatcctctatcattaaaa
aaaaaagattaagttTATATTACCTTTATTTCAGACCCTAGCCAACGAAA
actgtccgaactttttcgtggatCACCCGGTATTTATCATAGTTTTGGTA
GATTTGTTAGACCCTTTAATTAGCTTCCTTCTATTATACCCAAAAAAGAT
GTTCCattgttaaaaataagttaaatattttaaaaaaatgacataTTACA
AAATGATTTACACATCAACTGATaatttgtcccttccgttacacAAAATA
CACTCTaccgtcaacttgaaaaatatttattcaaattttatcagTGGGAT
TGATTCAACAACTCTGAAGAAGCATTTTTCAATAAATGTCTTTCTTTAAA
TTGCAATATATAAGGAGAAAAACCTAATCTCCATTGGTTTATTGATAAGG
GTTAAAAACTTGACCGGGTGGCAATTAGAGCTACAAACCTTTTATAAAAC
AATGTTATTGAGGGACACGCAATTGATTATCATGATAGAACCATTACTta
atataaataaataagtttagAAGCTTTTTGAGGATAAATATTTTCTAgtg
taacggaagggacaggtgtaccaaaaatgtggcctttacccACGTGCAAT
CATTAGGTTTGAAATTGTCAACTAACCTCAATTCTTTATTGTTTAGTTGC
AAACAGCAGTGTAGCTGTAAACCTTCATATTTACAGGAAAGGGTGTTTCA
ACCCAATGCAACACGTAATTTACGTTTCATCTAGTCCGATAAAGgcatta
aaaaatcatttttttgaagtttgcaaaaaaccgccatatattaaaaaaat
gattgacaaatTGAAGTTTTTCCTCCTGTAAGTGTTTAGAGTTGCACTGT
ACAGATTTGTAATATAATCTAAAATGCTTGCAAAATCCAAAGCATTTTGG
TCAGTGATTGTTTCATTCTAAAAATTGAATTGGCTTTTGGCTGAAGTTAA
TTTTCAAGGTTTAAAATCAtaattttgcttaaaatagAGCTAGGTCATTC
CTTTGCTTTAGGATTTTCAATTAACATAGCCTCAAAGCCAGCAGAACTTG
ATGCAGCTAttgagatattttcgtgttcaGCCTCAGCTAGTCCGAAACGC
AGGTCATGATAGTtttaattctttgaaaaggtagtattttgagaaaattt
ttacattgaaGAGAGCTTTTTCCTGACATAAACActatttattttgattt
cacCAATCCATAGAAAAAGCATATATATGAAAGAACGATGTCAGCCTCTG
AACCAGCCCCCGTAGAAGATGTTCAAGGTGATGGACGGTGGTCCAGTATG
GTGAGTtgctttatttttttaagaaaccaatattttattttagtttgaac
GTTTCTCTTTTTGATGAACCCAATGTTTTAAGTCATGGTCCTCTTCAAAC
ACTCACTTTATTTCCTAAGGGGCTGCGAAGCCCAAGAATTGTAgtgatga
ttttttttaccaaaaattcaattttgatcTATTTGAGAGCCGTTGATTCG
ATAGCGTTTTTATAAAGCACTTTATATTGTTTTGCATTCTATTCATTGGG
TCGGGATTGattcattttcaataaaactcaAATAGAAGAAAACTTGAGAT
TGacgaaaaataacaaagaaGTTTTTAtatatagtagggggccaagcctg
gggttccgtgacatcttttctatgacctagccatttttggtctattccaa
agaacagtatattacaaaatatttttgagagggagacgcggattaggccc
gggaaaattttttatgaccaaaatagtgacgccatatgcaaaactgcaag
ggaaaataaggggtagagaaatagcttattttttaaagtcaaaataaacg
aaaattatttgtaccatctgatagagcatgaaactccgagcaaaaaatta
tattacaacaactctctgactaaaacacacaatggcgtatggcgtcacta
tttttgtCATGAAAAGTTTCCCGGGCCTTTATttgcgtcctccctctcaa
aaatatcttgtaatatactgttcttttgaatagactaaaaatggctaggt
catagaaaagatgtcacggaacccaaggcttggccccctactaataaaca
tttaaaaaaaatggttgTTTGAGGCATATTAACATGTTTcatctttaaat
ttttagcaTCAAAGGCAAGTGGAAAGCTGCAGACTGCAAAAGCCAAATGT
CCTGTTTGTTGGAGACTCACTTATTCAACGTCTAGAAGATACTGAGGTTT
CCTTTGTCTGCCCAATACTGTATTGTTATtaccatagtgtcctccagggt
ttgttccccccactaaattcttgatttttttaaatctccctcctcttttt
ttttgcccctacagtatatggcccccaaaacggcgatcaaatttgaaatt
tctctcaaatctagaggaaaagagattttacaaaaatttttgctgtataa
aaacctttaacatctctactttatttcctggaagttctttttcaaaattt
tcaatttcaacaatatttttcaatcgctttaagataggtagcttttttct
aatggcccccaaaacggaggtttgaaattttagcgatttctcgagttatc
tttaagatatgaatacagaattttgaccatagttttgaaatatgatttag
agggttttgggcataaatttatttgataaaatttttacagtatacccctg
gttgtcaaaatgcaggtttggggcccccaaaacggaggggtagttaaaat
caaattattaaggccagtggtaatagggggaaaaacgatgaacatatttg
tgttttcccttaaattgaCGActcgatggatgtaaaatttatgattttaa
tgaaatatttgaagattttcgatattgcaaagtccaaactgaaaatttag
aaattttcaaaatgacaattttgatttaacaacgtctcaatcaagttttt
gaaaacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNgaaaatagttccattcatgtatg
gaataagctgtgaaaattttagaaaaaaagctcaactgaaactgaaaata
ttaagctttaaagatatttttctcctatattttgcaaaaaattgacagaa
tttgctgtttttgctgattcagcgaaaaattttatatataatgttaattt
tttgttataaactattaactcaaggtaataggaatagaattccaagatct
tttctttttctcatatttagaattttcggttttgtcaaccacgcatgctg
gaaaaactggaaaacctggaaaaactggaaaaatggcctttttctgaaaa
ctagctggaaaaactggaaatagGTACATTTTCCAAACAGGaaagctgga
aaaactggaaaagcttttttgaaatttcaatttcaactttATGTCAGGAA
TTGGTTAGAATTATTATGTGATTATACatatatataattttcataAGATG
TTATCTAGTATGagtttagccattttcagtttaGTTCATCAGACATTCTT
TTGTCAAAGCATAGATCTCTATgaccgatttgaaagaaatgtcttttgaa
aatctagaagtaccagtggataccccttaaaacctacaaagctGCACTAT
GGGCTCTCTTAGCCAccaaattcaattcaatattgTTTAGTTCACTattt
tacaacctcttataaatgtactttcataaaatacctaatttcgAGAATTT
CAATTATCgcaaagtgttataaaattcaaagttatctaaattttatcaag
aatcacatcaaaaaataagtggccccccactttttggtagaccatgtcat
acgtttttaagagttactattttaagctggtttgagaccaaatcaaacca
catAAACTATTATTCTTCCCAattagatatcgttttaaggtgttttgagg
gtgtaaaatgtgaaaaatcttcttcgtcgcccaaccatggtgggcgacat
tctttttccaaaatgttggctccctcactcaaaatggctcgccggggccc
atacgatggctagccacgatggctaaaaAGATCTATAGAATATCTACAAG
ATCTATAAGAATatgaaaatataattcttcTAAGCCATTTACTTAATCGT
GGTTAAAGATTGCAATGcattgttatcttttttctcatttctttcataaa
atgaaaTACCACAGACAGCGTACTTTCAACACATAAAGTTTCAGCCTAAA
ATTCCACCTACGTTTTCTGATAGAGGGtacctttatttttttgtaggtTT
TGAGGGGTATCCGCTGGTAATGATTTTGCACTCGCTTATAGCTGGAAAAA
AGTACAGATTTTTGGGTTAAGGCTGGAAAAAGGTACATTTTCCAGCTGAA
AATACCTGGAAAAAAGGATGTTTTTGACCCAAAAAGCTGGatttttcatc
taaaataaGTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaatccgtctcaaaccagcaaaaacatgctcattc
ttaagtataaccatcattctttcaaaataaacaaaaatcgtttaattctg
ataaatctgcAAGTCAGAAtctttattttaataaaaaccTCCGtcttggg
ggccgtctccgttttgggggccatatactgtatgacttttcagtttttta
gtttcccccctcttttgctttacccccagaaaattctgaaaatatcagtt
ccccccatatacccatataaacttctcaaatttcaacctgacacaaacgg
AACGAAAATGGGTTCCTACTGTAGATGCTAAATGCAACATATTCAATAAA
CAGAAAAACTATAGGAACAATAGGAATTTTCAAATCAGTTCTTAGCAGAA
TATTTTTATCAGAAAATAACAATTTCTTTGTTTATTCAGACGTGGGAAGA
TACAATTAAACCATTGAATGCTGTGAACGCCGGGATAGGTGGCGACCGGA
CTGAACATGTTTTATGGCGACTACAAAATGGCCTTCTTCAACATTGTAAA
CCTAAAGTATTTTTATTATGGTTTTTCAACAATATTCACGACTCTCTGAT
TGACTTTATTACACTTATGTAtgttttattgacaaaatttcTTACTCCTA
AAAACTAttacttttattcttttatcctttttATAATCATTTGTCACAAA
AAGTTATTGCAGCGAATTTTATAGCCTCTAGAAGGAAGCTCGTTGGGGTC
GGAAACTTTTTTCCACCTCAGCGCACCGTGTTCTAGAGGCTATGACTTTT
GACACAATagttttaagtaaaaaaaaatatataaatttaatCTTGTCAcg
ttatattttgttttctccAGGTCGTTGTTATTTTGTGTGGTACAAATAAT
CACCAGCATTCATCTGATGAAATTGTGGATGCTCTTGAAGCAATCTGTTG
GAGTGTGGCAGATGTACTGAAAGACACTAAGATCGTTCTTATCGTAAGAA
TCATAACGTTCTCCTTTAAAATACTGAAATTATTATCTTAACTGTATATT
CGAACTTGGTAATTTGAAtctctttgtaattcgaacaaacaAGATTCCCT
GTTCGAATTCGAATCCACGAAAGTCGACTTTAAAAGACTAACCCTTTGAC
GGAAATCCCTCACAATCCCATGTTGCTCTATTTTTAAGTCTGCCAGTGGC
TTTGACGGATATGGCTCAGATAATTGCACTGAGTCGTAAAAATTTATGAT
TTGTTGGTCCAGGATACAATAGATATGATGAAACTTTCACCGCGCTGAAT
CTAaaaatagattttatttttgacataatcattactctcgatgtgtttgt
acgagttccaatcccatcaacctttgcgttaatctcttttgtACGTTAAT
TACATAATTTGACAAAGGATATTtaacaacttgcacgtatctttgattga
gccgcattgaattgtgggattgcaactcgtacaaatgtctaaaaaagtga
aaagtaataattatgacgtatatgttgcggagcgctattataatacacct
tttcgaccgtagccgccaattaccgcgcgggcatttttttgtccgcttca
TCCCAccaaaaccgtcccagtccttttttcgcacctatagacaatagaaa
aatgtgtcaaaaaagggttggatcgagtttaaggggataattaaataatt
aagtggcacgcgcctgaccgcgcgactacggtcgaaaacgATAATTGATA
TATCTTTTCTGAAGGCTTTGCTACCACGTGGAGAAAAAGACAATCCATTG
CGTAATAAAATCTATCAAATCAATTACGGTATCGAACAGATTATATCAAC
CATTCCGAACACTCATTTAATCAATGCTGACCCTGGGTTTGTTCGTTCAG
ATGGTGTCATCTTTCCTGAAGACATGGCTGACTATTTACATTTAACACGC
CGCGGGTATAAGAAGTTTTGTGTCCCCATCATGTCGTGTGTGAAGAAGTT
TCTGCAAGAAGATGCGAAAAAGGAAAAAGCTTTTAATAATAGTATTTATA
CTTTCCATGAGTGAAGATTTGTTGAACAGCTACttcgataaatttttttt
aagcatGTATAAAATCGTAATTAGGNAATAATAGTATTTATACTTTCCAT
GAGTGAAGATTTGTTGAACAGCTACttcgataaattttttttaagcatGT
ATAAAATCGTAATTAGGTTTTTAACAGTGGCTCTATCTCTAAAGATCTAA
TCTTTAAGCATTACAGAGTCTGGCAAGGGAAAGACACTTTAAAAAAACTG
TATTTGGACTATGCAgcactgcaatgtcttccacggacccaatagctgat
tggttgaaagtgacgtaaaatcaatcaatactTCACTtgtaaccaatcag
ctgttgggtccgtggaagacattgcaatggtgcatatcatgaagaCGGAC
CAAGCTGCAAATGAGGTATTTTCGAGATTACTTCGACGAAATTTAGTAAA
CACTTTAATTGATACTTTGATGTCCTCGATTTCAGCGTTTGCATTTTGTT
GACCTCTAACAATCAAATCGATTTGGTATTTGATTTTGCAATTTGTTCTG
TTTGTTGGGAGCAGATGTATTTAATTCTGGTAGTCAAATTGTTTTGGCAT
TTTTATATTAATCAAAACGaattttcttgaatttattagataaattttca
ttttactaaataactaaaaatgacaatataattttttgtaACTCTTCGtt
aatcattttttatttttacatgcaGTACATTAGAATATTTCTTTAAAGTC
TATTTATATCATCGATAATTCATCCATGAATTTTTAgtatatctttttaa
ttttacgtTATAAATTTCCTTCTAGAAGATGAACATTCAATAAATAGTTT
GATAACATATATTTCCATTGCTCCAAttatttaatgttttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031678XLOC_031678Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049998-exon-scaffold_167-1491911889:1816804..1817166TCONS_00049998-exon-scaffold_167-1491911889:1816804..1817166Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1510915933:1816804..1817166TCONS_00049998-exon-scaffold_167-1510915933:1816804..1817166Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1575043694:1816804..1817166TCONS_00049998-exon-scaffold_167-1575043694:1816804..1817166Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1491911889:1833210..1833299TCONS_00049998-exon-scaffold_167-1491911889:1833210..1833299Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1510915933:1833210..1833299TCONS_00049998-exon-scaffold_167-1510915933:1833210..1833299Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1575043694:1833210..1833299TCONS_00049998-exon-scaffold_167-1575043694:1833210..1833299Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1491911889:1836443..1836548TCONS_00049998-exon-scaffold_167-1491911889:1836443..1836548Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1510915933:1836443..1836548TCONS_00049998-exon-scaffold_167-1510915933:1836443..1836548Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1575043694:1836443..1836548TCONS_00049998-exon-scaffold_167-1575043694:1836443..1836548Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1491911889:1836874..1836996TCONS_00049998-exon-scaffold_167-1491911889:1836874..1836996Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1510915933:1836874..1836996TCONS_00049998-exon-scaffold_167-1510915933:1836874..1836996Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1575043694:1836874..1836996TCONS_00049998-exon-scaffold_167-1575043694:1836874..1836996Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1491911889:1837768..1838945TCONS_00049998-exon-scaffold_167-1491911889:1837768..1838945Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1510915933:1837768..1838945TCONS_00049998-exon-scaffold_167-1510915933:1837768..1838945Clytia hemisphaericaexon
TCONS_00049998-exon-scaffold_167-1575043694:1837768..1838945TCONS_00049998-exon-scaffold_167-1575043694:1837768..1838945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1816804..1838945 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.967162	1.17654	5.65113	9.80454	2.04369	1.24883	2.54656	2.23752	1.00457	0.221534	1.14703	0.721616	0.681837	1.34772	0.149108	0.641861	0.315338	0	0.614362	0.394777	0.67805	0.334585	1.93257	1.43583	1.85958	1.24695	0.379323	1.60379	2.46157	2.18608
Blast
[Close]
BLAST of TCONS_00049998 vs. Swiss-Prot (Human)
Match: PA1B2 (Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.452e-41
Identity = 50/130 (38.46%), Postives = 80/130 (61.54%), Query Frame = 2 
Query:  560 VVVILCGTNNHQHSSDEIVDALEAICWSVADVLKDTKIVLIALLPRGEKDNPLRNKIYQINYGIEQIISTIPNTHLINADPGFVRSDGVIFPEDMADYLHLTRRGYKKFCVPIMSCVKKFLQEDAKKEKA 949
            V+V+  GTNNH+++++E+   +EAI   +       KI+++ LLPRGEK NPLR K  ++N  ++  +  + N  L++ D GFV SDG I   DM D+LHLT  GY K C P+   + + L+E  ++++ 
Sbjct:   97 VIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLEETPEEKQT 226

HSP 2 Score: 80.1073 bits (196), Expect = 3.452e-41
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:  361 EHQRQVESCRLQKPNVLFVGDSLIQRLEDTETWEDTIKPLNAVNAGIGGDRTEHVLWRLQNGLLQHC--RCYFVW 579
            +H R V  C+ ++P+VLFVGDS++Q ++  E W +   PL+A+N GIGGD T HVLWRL+NG L++   +   VW
Sbjct:   27 QHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVW 101
The following BLAST results are available for this feature:
BLAST of TCONS_00049998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PA1B23.452e-4138.46Platelet-activating factor acetylhydrolase IB subu... [more]
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