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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050198 ID=TCONS_00050198|Name=TCONS_00050198|organism=Clytia hemisphaerica|type=transcript|length=1615bp
gttttttaatcaaatcccttaagagtaattaagaacttaatcgcacgatg
ggttattttttcttatttggcacgccctcaaagagagcaattaatcgtta
attgcaNTATATTAcaaacttatgaaaaaaatagagGTTAATTCTTTCGT
GAATTACGAGTAATGTTCAatctctatcaatccttttacctaagtaattc
aaagaaataaaatcgcgacggaatattgtcggattttttatacctcaatt
ttgaaatactggCGGTACGTGGTTACACCCAAGGTTGGAAACTACATCTT
ATTACCCTTCATATCGTTTGTTCAGTTTCTGACGGCTAATGCAATCTAAA
AATTATAGTATCTATTTTCGTTTTTGAGACATGTTATAACTTACTCGAGG
CATGAAAAACCCTGAGGAAAGTGGCTCAGATAGATCAAGCGTGCAAATAA
GTTCCCCTCTTATCGAAAAAATCTGTTCCCGTTGAAGTTATTTAAGCTCT
TTCTAAATCCTGGAAAGAGCAATGGAGTTACTTTGTTTCAGAAATGGATA
TTTGTCCACGAAATATTATAATCACTGTCGACCATCATTACTAGTACTAC
AGAAAAGTAATATATAAAGATAAaagcaataaataaaaaaatgaggGCCG
CGGCATCGAGGAGCAGCGAGTTCAGAGGTTACTTTGGTCAACAATGAAAT
ATATTACCAAGACAATTAAAAAAACGCCTTTCACACCATTGCGTACGAGT
AATATGATAcacaaataaaacaaacaaaatactACTGCGCGATTCGTTTA
CGCATGCTCTGTAACTTTTCAATCCAACGTTCTTTTCGCACTTCAGGAGT
TTCACTGAAAAGAGCGCCAAATAATGGTTCATGACTGGTATCCTGTTTCA
ACAATAATGcttctttttgttgaaaagctGACATATCCATCGATTGATAC
ATATCACTTGCTTTATTCGCATTCGATTGCTGGTTCtgtttattcttctt
tttcttcttctttccttTACCAGCGGTCGGTTGTGTTGTGGCTCCACTCA
AACTCTTATAAAAACTTTCCTGAACAAAACCGTCTTCCTCAATTTTCCGT
ATATCATCTGCAGAAGGTTTATTGGCAATTAATTCATCTTTTGGTTGTTT
CACTGTCAGGGCTGTATCAGATGTTGTCAGTAAACGGATTTTCTCTTTCA
AATCTAATTGGTTGCTACCTTTACTCGCACGTCCTCGGCTTCTCGATCGA
TCGCGTGATTTATCCCTAGACCTATCACGTGATCTATCATATGATTTCGA
ACGATCACGTGACCTCGAACGTCCCCTTGATCTGTCATAAGAGCGATCAC
GCGATCTTCCACGACGTCTATCGTACGAGCGGTCACGAGATCTGTCGCGA
GAACGCTTACGTGAGTGTTTCTTATGCTTGCGATCGTATGACGAACTACG
GGATCGGCTTCTTGATCGTGATCGCCGTCGGTGTTTCTTTGATTTACGGC
TACTCCGACTTGAATCTTCATCCGAACTATAACTTCCCATGTTGTATACt
ctttattgttgttttttgtcttcttgtttgtttgttttttttgttttttt
tttttttgctgaaag Run BLAST on NCBI protein sequence of TCONS_00050198-protein >TCONS_00050198-protein ID=TCONS_00050198-protein|Name=TCONS_00050198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MGSYSSDEDSSRSSRKSKKHRRRSRSRSRSRSSSYDRKHKKHSRKRSRDR
SRDRSYDRRRGRSRDRSYDRSRGRSRSRDRSKSYDRSRDRSRDKSRDRSR
SRGRASKGSNQLDLKEKIRLLTTSDTALTVKQPKDELIANKPSADDIRKI
EEDGFVQESFYKSLSGATTQPTAGKGKKKKKKNKQNQQSNANKASDMYQS
MDMSAFQQKEALLLKQDTSHEPLFGALFSETPEVRKERWIEKLQSMRKRI
AQ Run BLAST on NCBI transcript from alignment at scaffold_167:1839331..1840945 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050198 ID=TCONS_00050198|Name=TCONS_00050198|organism=Clytia hemisphaerica|type=transcript|length=1615bp|location=Sequence derived from alignment at scaffold_167:1839331..1840945 (Clytia hemisphaerica)
ctttcagcaaaaaaaaaaaaaacaaaaaaaacaaacaaacaagaagacaa
aaaacaacaataaagaGTATACAACATGGGAAGTTATAGTTCGGATGAAG
ATTCAAGTCGGAGTAGCCGTAAATCAAAGAAACACCGACGGCGATCACGA
TCAAGAAGCCGATCCCGTAGTTCGTCATACGATCGCAAGCATAAGAAACA
CTCACGTAAGCGTTCTCGCGACAGATCTCGTGACCGCTCGTACGATAGAC
GTCGTGGAAGATCGCGTGATCGCTCTTATGACAGATCAAGGGGACGTTCG
AGGTCACGTGATCGTTCGAAATCATATGATAGATCACGTGATAGGTCTAG
GGATAAATCACGCGATCGATCGAGAAGCCGAGGACGTGCGAGTAAAGGTA
GCAACCAATTAGATTTGAAAGAGAAAATCCGTTTACTGACAACATCTGAT
ACAGCCCTGACAGTGAAACAACCAAAAGATGAATTAATTGCCAATAAACC
TTCTGCAGATGATATACGGAAAATTGAGGAAGACGGTTTTGTTCAGGAAA
GTTTTTATAAGAGTTTGAGTGGAGCCACAACACAACCGACCGCTGGTAaa
ggaaagaagaagaaaaagaagaataaacaGAACCAGCAATCGAATGCGAA
TAAAGCAAGTGATATGTATCAATCGATGGATATGTCagcttttcaacaaa
aagaagCATTATTGTTGAAACAGGATACCAGTCATGAACCATTATTTGGC
GCTCTTTTCAGTGAAACTCCTGAAGTGCGAAAAGAACGTTGGATTGAAAA
GTTACAGAGCATGCGTAAACGAATCGCGCAGTagtattttgtttgtttta
tttgtgTATCATATTACTCGTACGCAATGGTGTGAAAGGCGTTTTTTTAA
TTGTCTTGGTAATATATTTCATTGTTGACCAAAGTAACCTCTGAACTCGC
TGCTCCTCGATGCCGCGGCcctcatttttttatttattgcttTTATCTTT
ATATATTACTTTTCTGTAGTACTAGTAATGATGGTCGACAGTGATTATAA
TATTTCGTGGACAAATATCCATTTCTGAAACAAAGTAACTCCATTGCTCT
TTCCAGGATTTAGAAAGAGCTTAAATAACTTCAACGGGAACAGATTTTTT
CGATAAGAGGGGAACTTATTTGCACGCTTGATCTATCTGAGCCACTTTCC
TCAGGGTTTTTCATGCCTCGAGTAAGTTATAACATGTCTCAAAAACGAAA
ATAGATACTATAATTTTTAGATTGCATTAGCCGTCAGAAACTGAACAAAC
GATATGAAGGGTAATAAGATGTAGTTTCCAACCTTGGGTGTAACCACGTA
CCGccagtatttcaaaattgaggtataaaaaatccgacaatattccgtcg
cgattttatttctttgaattacttaggtaaaaggattgatagagatTGAA
CATTACTCGTAATTCACGAAAGAATTAACctctatttttttcataagttt
gTAATATANtgcaattaacgattaattgctctctttgagggcgtgccaaa
taagaaaaaataacccatcgtgcgattaagttcttaattactcttaaggg
atttgattaaaaaac Coding sequence (CDS) from alignment at scaffold_167:1839331..1840945 >TCONS_00050198 ID=TCONS_00050198|Name=TCONS_00050198|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_167:1839331..1840945 (Clytia hemisphaerica)
ATGGGAAGTTATAGTTCGGATGAAGATTCAAGTCGGAGTAGCCGTAAATC
AAAGAAACACCGACGGCGATCACGATCAAGAAGCCGATCCCGTAGTTCGT
CATACGATCGCAAGCATAAGAAACACTCACGTAAGCGTTCTCGCGACAGA
TCTCGTGACCGCTCGTACGATAGACGTCGTGGAAGATCGCGTGATCGCTC
TTATGACAGATCAAGGGGACGTTCGAGGTCACGTGATCGTTCGAAATCAT
ATGATAGATCACGTGATAGGTCTAGGGATAAATCACGCGATCGATCGAGA
AGCCGAGGACGTGCGAGTAAAGGTAGCAACCAATTAGATTTGAAAGAGAA
AATCCGTTTACTGACAACATCTGATACAGCCCTGACAGTGAAACAACCAA
AAGATGAATTAATTGCCAATAAACCTTCTGCAGATGATATACGGAAAATT
GAGGAAGACGGTTTTGTTCAGGAAAGTTTTTATAAGAGTTTGAGTGGAGC
CACAACACAACCGACCGCTGGTAaaggaaagaagaagaaaaagaagaata
aacaGAACCAGCAATCGAATGCGAATAAAGCAAGTGATATGTATCAATCG
ATGGATATGTCagcttttcaacaaaaagaagCATTATTGTTGAAACAGGA
TACCAGTCATGAACCATTATTTGGCGCTCTTTTCAGTGAAACTCCTGAAG
TGCGAAAAGAACGTTGGATTGAAAAGTTACAGAGCATGCGTAAACGAATC
GCGCAGTag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050198-exon-scaffold_167-1491911889:1839331..1840945 | TCONS_00050198-exon-scaffold_167-1491911889:1839331..1840945 | Clytia hemisphaerica | exon |
| TCONS_00050198-exon-scaffold_167-1510915933:1839331..1840945 | TCONS_00050198-exon-scaffold_167-1510915933:1839331..1840945 | Clytia hemisphaerica | exon |
| TCONS_00050198-exon-scaffold_167-1575043694:1839331..1840945 | TCONS_00050198-exon-scaffold_167-1575043694:1839331..1840945 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1839331..1840945 . |
Blast
The following BLAST results are available for this feature:
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