TCONS_00050131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050131
Unique NameTCONS_00050131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2961

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050131 ID=TCONS_00050131|Name=TCONS_00050131|organism=Clytia hemisphaerica|type=transcript|length=2961bp
NTAAATTTTGGTTGAGGCTTAAAGCgttatttttaaatataatatTGATG
CCTGCTCTATTTATACTCGGCTATTTCTTAAATCTGATGGACGGGTTATC
CCCAAGAGCAGCAACGggctaggaagtatgaaatatctgtttttgaggtc
cctttctcctggaaaaaaactatctgttctgtatcctgggctctcctgga
ttatatccatctgttttggtaaaaaatgggattcctggttctcaaagaaa
tattatgctcctggaaaaatataacagctattctctaagaaagttaaaat
gctcctagaaaatgagaccttttaagaaaaatatgaagctccctggaaaa
aaatctggcatcggctgtttttcaaaatttagctcctggattttttgaac
GGATTGTCCGCTGGAAGATTGTACAGTAggtgtgtttttccttaaaaagt
gCTTTTGGATTTTAAAAACAGATGTTtttaaggcgacccctggattttac
ctgggtgttttgaggaaagtttctcctagatttatccataaaatttactt
tcctggaaaaaaagatcagatatttcaaaaaatatgcTGGCGACTGCTCT
TGTATCCCTAATTTGTTCTTTGGTAATGACTTGAGCCTTAAATGGATGAA
ATTTAGTAAGTGCGGAATGAAGTTTGAGACATGATTCCAACTTAAAAAAC
TAGAACAGGTTAAGAACTATTTTATAGGCTTTGAAGTATAGAGCCGAGCC
ATAaaaatttaatgtttctaatagaaaaatgtaactttttgatACCAATG
ACCCTAACCTTGCAACAATTCAACAATCAATatcaaaataccaaatttta
cttgaaaatttgggaaaagaTGTAAAAGTTTTCATACATTTATCACTGAC
CACTTCCGCTGTCTTTAAATAGCACAATATTGTCAAGAATCTGAAATGAT
AGGTCTGAGGTTTttggaaaaagtcgaaaaacgAACAATCAATGTTTATT
AGATATTTACGTGAGTATTCAGGAATGAAGTCTCAAAAGTcaaaaggttg
aaaattttcatccttttttcttttagttaAAAGTTCACCAAATGGAGTTG
CTTTCAATGTTTGCATCAAACCAGCTCAAAAGGTCAAGAAAGTATTAGTT
TATTCGCCGAGCACGAAGAAAACCTGTGACGAAAAGATGCAAACTGTTAT
TCAGAACAGAACTATGCTTCAAAAGATgaaagagaaagaagaagaagcaa
GAATCCAAAAAGCTTTGAAAGCCAAACGTCAACAAGAAGAACTTAACGAA
AGTCGAAAGAAGCTGGCAGAAATGAAGCTCTCACAACAACTAGAAAAGGC
CGAAGAAATCCGAAAAGCTAATCAAAAAGCCGTCCTCGAAAAAGCGAAAT
ATTGCTTAGAGAAGGTTGAATATGTTCGTAATTCTAACCAACAAAAAATC
GCAGaacttgatgaaaaaattcGACAAAATTTGACTGAAGCTGAAGAAAA
ACGAAACGCACGATTCAGCGAGATTCGAGAAAAGTGTGGCAAACATGTTG
AAATCGCCAAAAAGACTGCTGAACAgataaaacaaatcaaaatgaatcGA
GACAGTTAATCAGATGGGTCGCTGTATGATTTAAGCCtttaaataaaaaa
ggaaaatggtgaaggtttttttagaatttttagttTCAGTTTctgtttgt
aaatttttttcataaatcataATTGGAATGATAAATTAAAAATTAGAAAG
ATAAAATTAGAATcagaatttaaaacaaaaatggctTCGTATAAATTATT
TTCAGGTACCCAATAAACATCCCTATATCCTTAGAGAACTAATTTTTGGG
AGGGCTATTTTGGCGCAGTGCATTAatcataaataataaaaaaagtgtga
attTATTTTAACGACACAGCAATTTCTACAAAACCAAAAACTTTTTCTAC
CGGAAAACTTGGTTTCGCGAATTACAAATCGTTGACTTTGCattaaaaga
aaacttaaaattcatgaaaCAAGGTAGAAACACAAAGACCTCCGAACATG
ACGTTCGAAATTTAGAACGGcatgtttttctccaaaaagtgGTACGAATA
TTTCTATGACTGTTCGattttttctctgaaaactTTCTATAGCGGTCGGT
TTTCTAAAAGCTTTCGTACTGTATAGTTGCTCTCATCCAGGGAAATTTAG
GCATTAGTCTCTTTCGTGCAAAAAGGGTGGCATACTATTTTATTCAAgtc
aaagaaaatattattggagtgacaaaagtgattcaaaataTACCTaagtg
tatatattttcgcgggtactaaatttcgcgagttttacgGCAAAATTAGA
CCTTTTCTTTTATAACCCTTATCTTGAAAGATATCcaattaccttaagtg
gattaattttggcgtggatttaatttggcgatcgggcaaaatgcgatttt
tggcgaggatttaatttggcgattgatcaattttgtaaaatttggcgggg
atttaatttgtcGAATTGGGAATTTGGAGACGCTTAAATGGATGAAAATT
ACTACAAAATATACTTAAAAGGTGTGATCTTTCGCATAAtactctttttg
ttaaatttggcgaggatttaatttggcgaatggccgatttttgaaatttt
ggcgaggatttaatttggcgaattttgtccAAATTCGCCAattttaatcc
ccgccaaaattaatccacttacgGTAAGTAAATTACGAAGTTTAACACAG
GCGAAAATTTCCAGAGTGGCGGTCGCGAAATTTAGTACTcgcgaaaatat
atacagtatatggcccccaaaacggaggtNAttccaaataaaaaacaaaa
tgctaCCAAAAAATGCATTGCTGAAAAGGTATTTTAATGTCTAAGCGTTT
AACTTAGGGCGCTTGAACTATGATATTGTTTATGTTACTATGCTactttt
tttctcccttt
Run BLAST on NCBI

protein sequence of TCONS_00050131-protein

>TCONS_00050131-protein ID=TCONS_00050131-protein|Name=TCONS_00050131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MQTVIQNRTMLQKMKEKEEEARIQKALKAKRQQEELNESRKKLAEMKLSQ
QLEKAEEIRKANQKAVLEKAKYCLEKVEYVRNSNQQKIAELDEKIRQNLT
EAEEKRNARFSEIREKCGKHVEIAKKTAEQIKQIKMNRDS
Run BLAST on NCBI

transcript from alignment at scaffold_167:1842313..1846196-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050131 ID=TCONS_00050131|Name=TCONS_00050131|organism=Clytia hemisphaerica|type=transcript|length=3884bp|location=Sequence derived from alignment at scaffold_167:1842313..1846196- (Clytia hemisphaerica)
NTAAATTTTGGTTGAGGCTTAAAGCGTTATTTTTAAATATAATATTGATG
CCTGCTCTATTTATACTCGGCTATTTCTTAAATCTGATGGACGGGTTATC
CCCAAGAGCAGCAACGGGCTAGGAAGTATGAAATATCTGTTTTTGAGGTC
CCTTTCTCCTGGAAAAAAACTATCTGTTCTGTATCCTGGGCTCTCCTGGA
TTATATCCATCTGTTTTGGTAAAAAATGGGATTCCTGGTTCTCAAAGAAA
TATTATGCTCCTGGAAAAATATAACAGCTATTCTCTAAGAAAGTTAAAAT
GCTCCTAGAAAATGAGACCTTTTAAGAAAAATATGAAGCTCCCTGGAAAA
AAATCTGGCATCGGCTGTTTTTCAAAATTTAGCTCCTGGATTTTTTGAAC
GGATTGTCCGCTGGAAGATTGTACAGTAGGTGTGTTTTTCCTTAAAAAGT
GCTTTTGGATTTTAAAAACAGATGTTTTTAAGGCGACCCCTGGATTTTAC
CTGGGTGTTTTGAGGAAAGTTTCTCCTAGATTTATCCATAAAATTTACTT
TCCTGGAAAAAAAGATCAGATATTTCAAAAAATATGCTGGCGACTGCTCT
TGTATCCCTAATTTGTTCTTTGGTAATGACTTGAGCCTTAAATGGATGAA
ATTTAGTAAGTGCGGAATGAAGTTTGAGACATGATTCCAACTTAAAAAAC
TAGAACAGGTTAAGAACTATTTTATAGGCTTTGAAGTATAGAGCCGAGCC
ATAAAAATTTAATGTTTCTAATAGAAAAATGTAACTTTTTGATACCAATG
ACCCTAACCTTGCAACAATTCAACAATCAATATCAAAATACCAAATTTTA
CTTGAAAATTTGGGAAAAGATGTAAAAGTTTTCATACATTTATCACTGAC
CACTTCCGCTGTCTTTAAATAGCACAATATTGTCAAGAATCTGAAATGAT
AGGTCTGAGGTTTTTGGAAAAAGTCGAAAAACGAACAATCAATGTTTATT
AGATATTTACGTGAGTATTCAGGAATGAAGTCTCAAAAGTCAAAAGGTTG
AAAATTTTCATCCTTTTTTCTTTTAGTTAAAAGTTCACCAAATGGAGTTG
CTTTCAATGTTTGCATCAAACCAGCTCAAAAGGTCAAGAAAGTATTAGTT
TATTCGCCGAGCACGAAGAAAACCTGTGACGAAAAGATGCAAACTGTTAT
TCAGAACAGAACTGTAAGAAAAGACCCTAAATTAACTCCCAAACGAACCA
AATCCTAGAAAATCCTCCCTAAAGCCAATGCAAAGCCTTGAAATTTTCAT
TTTAACATGTGAAAGTCAACGCAAAATTTTGGTAACTCTTTACACCCCTA
CGAGACATTTTCAATTAATTTAGAAATCACGCCCTTATCCAACTTTTTTG
GTCATCGTAGCTGCCTTTGGATCCATTTAAAGAGTAGATCGTTTTTTGGT
AAAGAGATTTTTTAGGTGTGGAATATGACCCTCTTCCACTCCCATTTGCC
CAGTAATTACTTAAATCTCGAATCCTGATCATCTCGTATAGTTAATTTCG
GATGTGGTCTGAACACTCTATTGTACCCTTACTTAGTGAAAGTAAATTAT
TTTTCTACAGATGCTTCAAAAGATGAAAGAGAAAGAAGAAGAAGCAAGAA
TCCAAAAGTAAGTTTGAGTGTTTTTCACAACAGTGATTTGAATGTAGCTC
TGTCAACAGAGCAACCATCTCTTTTCATCGTTTCGTCCAACTTAACTCAT
AAATTGCCGTCACTTGGCCGAATCTTTATTATCTTGTAAAATACTTTCGC
GAATTCGCTATGTTTAAAAATTTCAGTCAAAACGCTAAAATGAGCCAAGA
ATCGTGAAAATCACAAATACTTAAAATATTGGGATTCTCAAAATATAACT
ACCGGTAGACTTATAACTATAAATTTCTACATAGAGCTTTGAAAGCCAAA
CGTCAACAAGAAGAACTTAACGAAAGTCGAAAGAAGCTGGCAGAAATGAA
GCTCTCACAACAACTAGAAAAGGCCGAAGAAATCCGAAAAGCTAATCAAA
AAGCCGTCCTCGAAAAAGCGAAATATTGCTTAGAGAAGGTATTTTTTCAA
CTAATCACCGTGTTTCAAAAATTGCTTCAACTTCAAGTATCAAAAGACTA
TGGCTAAAAATGCAAATAAACGTGTCAAAGCAAACACTACATCTACTTCT
AATCGGTTCTGAATGAGAAAAATTTGAATCTATAACTGATTTTCAAGTGT
ACTTTGTGGTCCAATTTTAGTCTGAAAATATACAGCAATTTAAATGATGC
GATTCATAAAATTTTTAAATTCTTTTTCTCTACACAGGTTGAATATGTTC
GTAATTCTAACCAACAAAAAATCGCAGAACTTGATGAAAAAATTCGACAA
AATTTGACTGAAGCTGAAGAAAAACGAAACGCACGATTCAGCGAGATTCG
AGAAAAGTGTGGCAAACATGTTGAAATCGCCAAAAAGACTGCTGAACAGA
TAAAACAAATCAAAATGAATCGAGACAGTTAATCAGATGGGTCGCTGTAT
GATTTAAGCCTTTAAATAAAAAAGGAAAATGGTGAAGGTTTTTTTAGAAT
TTTTAGTTTCAGTTTCTGTTTGTAAATTTTTTTCATAAATCATAATTGGA
ATGATAAATTAAAAATTAGAAAGATAAAATTAGAATCAGAATTTAAAACA
AAAATGGCTTCGTATAAATTATTTTCAGGTACCCAATAAACATCCCTATA
TCCTTAGAGAACTAATTTTTGGGAGGGCTATTTTGGCGCAGTGCATTAAT
CATAAATAATAAAAAAAGTGTGAATTTATTTTAACGACACAGCAATTTCT
ACAAAACCAAAAACTTTTTCTACCGGAAAACTTGGTTTCGCGAATTACAA
ATCGTTGACTTTGCATTAAAAGAAAACTTAAAATTCATGAAACAAGGTAG
AAACACAAAGACCTCCGAACATGACGTTCGAAATTTAGAACGGCATGTTT
TTCTCCAAAAAGTGGTACGAATATTTCTATGACTGTTCGATTTTTTCTCT
GAAAACTTTCTATAGCGGTCGGTTTTCTAAAAGCTTTCGTACTGTATAGT
TGCTCTCATCCAGGGAAATTTAGGCATTAGTCTCTTTCGTGCAAAAAGGG
TGGCATACTATTTTATTCAAGTCAAAGAAAATATTATTGGAGTGACAAAA
GTGATTCAAAATATACCTAAGTGTATATATTTTCGCGGGTACTAAATTTC
GCGAGTTTTACGGCAAAATTAGACCTTTTCTTTTATAACCCTTATCTTGA
AAGATATCCAATTACCTTAAGTGGATTAATTTTGGCGTGGATTTAATTTG
GCGATCGGGCAAAATGCGATTTTTGGCGAGGATTTAATTTGGCGATTGAT
CAATTTTGTAAAATTTGGCGGGGATTTAATTTGTCGAATTGGGAATTTGG
AGACGCTTAAATGGATGAAAATTACTACAAAATATACTTAAAAGGTGTGA
TCTTTCGCATAATACTCTTTTTGTTAAATTTGGCGAGGATTTAATTTGGC
GAATGGCCGATTTTTGAAATTTTGGCGAGGATTTAATTTGGCGAATTTTG
TCCAAATTCGCCAATTTTAATCCCCGCCAAAATTAATCCACTTACGGTAA
GTAAATTACGAAGTTTAACACAGGCGAAAATTTCCAGAGTGGCGGTCGCG
AAATTTAGTACTCGCGAAAATATATACAGTATATGGCCCCCAAAACGGAG
GTNATTCCAAATAAAAAACAAAATGCTACCAAAAAATGCATTGCTGAAAA
GGTATTTTAATGTCTAAGCGTTTAACTTAGGGCGCTTGAACTATGATATT
GTTTATGTTACTATGCTACTTTTTTTCTCCCTTT

Coding sequence (CDS) from alignment at scaffold_167:1842313..1846196-

>TCONS_00050131 ID=TCONS_00050131|Name=TCONS_00050131|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_167:1842313..1846196- (Clytia hemisphaerica)
GTTGAATATGTTCGTAATTCTAACCAACAAAAAATCGCAGAACTTGATGA
AAAAATTCGACAAAATTTGACTGAAGCTGAAGAAAAACGAAACGCACGAT
TCAGCGAGATTCGAGAAAAGTGTGGCAAACATGTTGAAATCGCCAAAAAG
ACTGCTGAACAGATAAAACAAATCAAAATGAATCGAGACAGTTAAAGCTT
TGAAAGCCAAACGTCAACAAGAAGAACTTAACGAAAGTCGAAAGAAGCTG
GCAGAAATGAAGCTCTCACAACAACTAGAAAAGGCCGAAGAAATCCGAAA
AGCTAATCAAAAAGCCGTCCTCGAAAAAGCGAAATATTGCTTAGAGAAGA
TGCTTCAAAAGATGAAAGAGAAAGAAGAAGAAGCAAGAATCCAAAAATGC
AAACTGTTATTCAGAACAGAACTGTTGAATATGTTCGTAATTCTAACCAA
CAAAAAATCGCAGAACTTGATGAAAAAATTCGACAAAATTTGACTGAAGC
TGAAGAAAAACGAAACGCACGATTCAGCGAGATTCGAGAAAAGTGTGGCA
AACATGTTGAAATCGCCAAAAAGACTGCTGAACAGATAAAACAAATCAAA
ATGAATCGAGACAGTTAAAGCTTTGAAAGCCAAACGTCAACAAGAAGAAC
TTAACGAAAGTCGAAAGAAGCTGGCAGAAATGAAGCTCTCACAACAACTA
GAAAAGGCCGAAGAAATCCGAAAAGCTAATCAAAAAGCCGTCCTCGAAAA
AGCGAAATATTGCTTAGAGAAGATGCTTCAAAAGATGAAAGAGAAAGAAG
AAGAAGCAAGAATCCAAAAATGCAAACTGTTATTCAGAACAGAACTGTTG
AATATGTTCGTAATTCTAACCAACAAAAAATCGCAGAACTTGATGAAAAA
ATTCGACAAAATTTGACTGAAGCTGAAGAAAAACGAAACGCACGATTCAG
CGAGATTCGAGAAAAGTGTGGCAAACATGTTGAAATCGCCAAAAAGACTG
CTGAACAGATAAAACAAATCAAAATGAATCGAGACAGTTAAAGCTTTGAA
AGCCAAACGTCAACAAGAAGAACTTAACGAAAGTCGAAAGAAGCTGGCAG
AAATGAAGCTCTCACAACAACTAGAAAAGGCCGAAGAAATCCGAAAAGCT
AATCAAAAAGCCGTCCTCGAAAAAGCGAAATATTGCTTAGAGAAGATGCT
TCAAAAGATGAAAGAGAAAGAAGAAGAAGCAAGAATCCAAAAATGCAAAC
TGTTATTCAGAACAGAACTGTTGAATATGTTCGTAATTCTAACCAACAAA
AAATCGCAGAACTTGATGAAAAAATTCGACAAAATTTGACTGAAGCTGAA
GAAAAACGAAACGCACGATTCAGCGAGATTCGAGAAAAGTGTGGCAAACA
TGTTGAAATCGCCAAAAAGACTGCTGAACAGATAAAACAAATCAAAATGA
ATCGAGACAGTTAAAGCTTTGAAAGCCAAACGTCAACAAGAAGAACTTAA
CGAAAGTCGAAAGAAGCTGGCAGAAATGAAGCTCTCACAACAACTAGAAA
AGGCCGAAGAAATCCGAAAAGCTAATCAAAAAGCCGTCCTCGAAAAAGCG
AAATATTGCTTAGAGAAGATGCTTCAAAAGATGAAAGAGAAAGAAGAAGA
AGCAAGAATCCAAAAATGCAAACTGTTATTCAGAACAGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031736XLOC_031736Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050131-exon-scaffold_167-1575043694:1844984..1846196TCONS_00050131-exon-scaffold_167-1575043694:1844984..1846196Clytia hemisphaericaexon
TCONS_00050131-exon-scaffold_167-1575043694:1844540..1844586TCONS_00050131-exon-scaffold_167-1575043694:1844540..1844586Clytia hemisphaericaexon
TCONS_00050131-exon-scaffold_167-1575043694:1844109..1844262TCONS_00050131-exon-scaffold_167-1575043694:1844109..1844262Clytia hemisphaericaexon
TCONS_00050131-exon-scaffold_167-1575043694:1842313..1843859TCONS_00050131-exon-scaffold_167-1575043694:1842313..1843859Clytia hemisphaericaexon
TCONS_00050131-exon-scaffold_167-1510915933:1844984..1846196TCONS_00050131-exon-scaffold_167-1510915933:1844984..1846196Clytia hemisphaericaexon
TCONS_00050131-exon-scaffold_167-1510915933:1844540..1844586TCONS_00050131-exon-scaffold_167-1510915933:1844540..1844586Clytia hemisphaericaexon
TCONS_00050131-exon-scaffold_167-1510915933:1844109..1844262TCONS_00050131-exon-scaffold_167-1510915933:1844109..1844262Clytia hemisphaericaexon
TCONS_00050131-exon-scaffold_167-1510915933:1842313..1843859TCONS_00050131-exon-scaffold_167-1510915933:1842313..1843859Clytia hemisphaericaexon
TCONS_00050131-exon-scaffold_167-1491911889:1844984..1846196TCONS_00050131-exon-scaffold_167-1491911889:1844984..1846196Clytia hemisphaericaexon
TCONS_00050131-exon-scaffold_167-1491911889:1844540..1844586TCONS_00050131-exon-scaffold_167-1491911889:1844540..1844586Clytia hemisphaericaexon
TCONS_00050131-exon-scaffold_167-1491911889:1844109..1844262TCONS_00050131-exon-scaffold_167-1491911889:1844109..1844262Clytia hemisphaericaexon
TCONS_00050131-exon-scaffold_167-1491911889:1842313..1843859TCONS_00050131-exon-scaffold_167-1491911889:1842313..1843859Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050131-proteinTCONS_00050131-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1842313..1846196 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
532.446	525.645	537.599	549.456	1.50682	1.07925	1.36058	1.68639	0.646261	1.01599	0.82599	0.765016	0.577044	0.430895	0.414974	0.630026	0.731172	0.678009	0.583067	0.522714	2.37757	2.06555	218.157	174.163	323.08	192.616	10.7941	13.7812	83.5728	96.9564
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top