TCONS_00050132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050132
Unique NameTCONS_00050132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1065

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050132 ID=TCONS_00050132|Name=TCONS_00050132|organism=Clytia hemisphaerica|type=transcript|length=1065bp
CTCCGACTTCGATCTCGAGTCTCAATTCTTATACAATGACCCACATCCAG
TAAACTCATGTCTGAAAGTCAGTAAAAAATCATGTGGTACTTTCAAAGAT
AAACAATTTAAAACTTCACCTTGTTCAACTCGGAGCCCATCCCCTGATGA
GGAATTAAGACAGACACCATTTCGACTGGATAGtggtaaaacctctttta
ccgGACAACAAAACTCAAGAACTAAAGAGAAGTCTTATAGTACAAAGAAG
TCGACTAAAAGAGGATCAAAGACGGTCAAAAGTACTTTAGAAGGTGCTTT
CGATTTGAACAAATCAGAGAATTCGAGTGACGAAGAAACAGAAGGGTCGA
GTAACAGAAGATTTCTGATCGAATCCGATCAAATTCGGGTTACAATATCG
GGGAATAAACTGGCGAAAGGAACATTCAAAATCACACATGAATCGAGTGG
AAGATCTACACTTCAAAAACAAAGCCAAgGAGAGAAAAGGAGCAGCAAGA
CCTCCGAAGACAAGCCTTGTTTGCAATGTTTGAGTCCGTACCAAGCTCGA
CAGATGCTTCACCGCCATACGTTCCCTCTTAAAAGCACATCGATGAGACC
CCGAACACGGCACAAACCAGTTGTCATTACTCAGCAACCCGTCACTTCAc
ctttatcaaaatatttcacacaaaaacaacgGAAAGAACCTGTGAAAGGA
TTTTCACGCGCACATGAAAACGAAGCTTACAAGCGTGCACAGGCTAAATA
CATGGCTAGTGAGCGGGAAGAATATATTCCACCGACGAATATAATCTCAA
CTCCTGACTCTTTTTTAAGGATGCAGCAACAGCAACAGCCGTTTAGCAAA
AAACCTTTATCTCGATGTTCCATGCAAAAAGCACGCCAAATTCTAGCACT
TGAGAGTATCAAGAATAAACAAGACCATCGTCAAGGAgatatcaaaataa
acaaagatggcagaatgAAACCACCAAGAAGAGTCTCTTTTAGCATCTGA
TGTTCTTATTATTTGTATTAATTGGGAATTcttaaattcttgaaaataac
aATTCGAACCcagaa
Run BLAST on NCBI

protein sequence of TCONS_00050132-protein

>TCONS_00050132-protein ID=TCONS_00050132-protein|Name=TCONS_00050132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
SDFDLESQFLYNDPHPVNSCLKVSKKSCGTFKDKQFKTSPCSTRSPSPDE
ELRQTPFRLDSGKTSFTGQQNSRTKEKSYSTKKSTKRGSKTVKSTLEGAF
DLNKSENSSDEETEGSSNRRFLIESDQIRVTISGNKLAKGTFKITHESSG
RSTLQKQSQGEKRSSKTSEDKPCLQCLSPYQARQMLHRHTFPLKSTSMRP
RTRHKPVVITQQPVTSPLSKYFTQKQRKEPVKGFSRAHENEAYKRAQAKY
MASEREEYIPPTNIISTPDSFLRMQQQQQPFSKKPLSRCSMQKARQILAL
ESIKNKQDHRQGDIKINKDGRMKPPRRVSFSI
Run BLAST on NCBI

transcript from alignment at scaffold_167:1862002..1865408-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050132 ID=TCONS_00050132|Name=TCONS_00050132|organism=Clytia hemisphaerica|type=transcript|length=3407bp|location=Sequence derived from alignment at scaffold_167:1862002..1865408- (Clytia hemisphaerica)
CTCCGACTTCGATCTCGAGTCTCAATTCTTATACAATGACCCACATCCAG
TAAACTCATGTCTGAAAGTCAGTAAAAAATCATGTGGTACTTTCAAAGAT
AAACAATTTAAAACTTCACCTTGTTCAACTCGGAGCCCATCCCCTGATGA
GGAATTAAGACAGACACCATTTCGACTGGATAGTGGTAAAACCTCTTTTA
CCGGACAACAAAACTCAAGAACTAAAGAGAAGTCTTATAGTACAAAGAAG
TCGACTAAAAGAGGATCAAAGACGGTCAAAAGTACTTTAGAAGGTGCTTT
CGATTTGAACAAATCAGAGAATTCGAGGTAAGCATTATTCATATTACTTT
CGGTTGGTGCTTTTGGTTGAGAAGAACGGAAAGCCTGTCATATAGTAAAA
TTATAGTCCGTATAAAAAACCCTGGCTTATTGTTTTAACTTTTTGTTAGC
TTTTTCCTTTATTAAATATATCAAAAGATAAAAATCGATTTGCTCAGTTT
TTGATCACGTTACCAATTACTCCTCTTGGGATTGGTTTATGATTTAATCA
CATGATCAAAAAAAATAAGTAAAACAAACTGATTTATTAACGCAAGTTCA
AATGAGAATCAATGGAAGGAAACAAAAGGTTACCAGACCGGGTTTTTTTT
ATACGGACTATGGTAATCTTTTCTGCAAATTCATTATCGACCTCTTCACT
TCTATGGTTGCACTCGTGGCTAATTCTTCTCCATGGTCACATAGACTATC
TATTTTATCTATATATTTCGTACTAAAAGGTCCTAGGACCTATTATCCGT
ACATATGACCACGATGAAAATGATGGAGAAAGTTTGTTTAACGGTATTTA
ACGTTAATTCTTGAACGGGGTTTGAAATTGTCAGGTTCGACCGTCGGATG
TACAATGTTTCTCTGACGTCATCAGGTTTATGTCACTGCTATGGACAAAA
GACCTTTTCATAAATTACGTTACGAACATCACTTGCCTCGTTTTGAAATT
ATTGCCATGGTGATTAATTCCCAGCGGATTTTATCAAAACTACTTTATAT
TCATAAAATAACCATTAAATGTCTCAAGGGACATAATCACCATGGAAATT
GTTTGAATACGAGGCAAGGAATGTTCGTGACGTAATTTATGAAAAGGTCT
ATCAGCTATCCATGTTGCGTACGTACAAGAGTTTTGTAATCTTTCACCAT
ACTAAGATAGTAAATGCTATCCTGTTTCATTAAACATAGGCTAGGGATAC
TGGACTAGAATAACTCCTTGTACTTGATTCTTTTTATAGTGACGAAGAAA
CAGAAGGGTCGAGTAACAGAAGATTTCTGATCGAATCCGATCAAATTCGG
GTTACAATATCGGGGAATAAACTGGCGAAAGGAACATTCAAAATCACACA
TGAATCGAGTGGAAGATCTACACTTCAAAAACAAAGCCAAGGTAAAATAT
TCTGAAAATATATCTTTTAACTTCAAAATGATACAACTTGGTAGGGGGAA
GCAGAGTAGACTGGGACAATTGCGTTTAGCTTTAGGCATTGAAATATTTG
GCTAACCCATAATCAGTTTGAGGAAAATTAGTCCCAACCGAAGGTGATGA
AAAGCAAATATCTCGCTTCCCAACTAATGATTATAGCTTTCTCCTCACTT
CTCTATGTTAAATTGGGAAGAAACTATAGGCATCCGTATAAGACTCATGC
TCTAAAGAAATTTAGAATGTTCAAAATTTCATCAGAGAAGTGGAAGATCG
TCTAGGCTTGACGAGGATCAGATTAGGATCCAAAACTAAAAGGTTTTGTT
TCAAGTTATTTTACGATCTTCTGTACCATTATAATACGGAAATGAGTAAG
AGAAATTTCGTGCATGTAGCTAAAAGGTTTTGTTTCAAGTTATTTTACGA
TCTTCTGTACCATTATAATACGGAAATGAGTAAGAGAAATTTCGTGCATG
TAGCTAAAAGGTTTTGTTTCAAGTTATTTTACGATCTTCTGTACCATTAT
AATACGGAAATGAGTAAGAGAAATTTCGTGCATGTAGCTAAAAGGTCTTG
TTTCAAGCTGTTTCACGATCTTCTGTACCATTATAATACGGAAATGAGTA
AGATAAATTTCGTGCATGTAGCTAAAAGGTCTTGTTTCAAGTTTCTACAT
TTGTACATGTGGCTTCTCATTTAATAATAAACGACTCGGTTATTTCAGGA
GAGAAAAGGAGCAGCAAGACCTCCGAAGACAAGCCTTGTTTGCAATGTTT
GAGTCCGTACCAAGCTCGACAGATGCTTCACCGCCATACGTTCCCTCTTA
AAAGCACATCGATGAGACCCCGAACACGGCACAAACCAGTTGTCATTACT
CAGCAACCCGTCACTTCACCTTTATCAAAATATTTCACACAAAAACAACG
GAAAGAACCTGTGAAAGGATTTTCACGCGCACATGAAAACGAAGCTTACA
AGCGTGCACAGGCTAAATACATGGCTAGTGAGCGGGAAGAATATATTCCA
CCGACGAATATAATCTCAACTCCTGACTCTTTTTTAAGGCAAGTATTGAA
TTATTTTATACACGCTTTTTTCATAAGAATACACTTAAAACACTCATGAT
GAAATCAGCCAAAATTTTAAGAATATGATAAGAATATAACCATCATGGAT
TTTGCAAACTATCCCTCCAGTAATGCTCAAAAAATAATAATCAATACTAT
CACAAAAATGCAATTTTTATGCTTCAGATACGTATAACATGCCAAATTTA
GGTTGAATCTGGATAAGAATACCTAAGAATACCGTAAGAATATTTTTGGA
TGACTTTCCCAAAAAGTTAAGAATATCCAATATAAAATATTAACGTGTAT
AGATCAGACCCTGAACTATTGGTAAATCATTGTAAACCCGACCCCTGTCT
ATAAAGCATACCGTTTTCACGTCAAAATTTTTACTGAATCCCGGAATCCC
GAAAATTGAAAACAATAATAACATCGTTACACCGTTTTGTACAGGTTAAA
GATACCGGTATATTGACAAAAAATAAGGGTAAATACCATCACCGTCTGGT
TTTCTTTTTCTTCGTCAAATCCCGTAATACCGTACTTAAAAAGGGTCGAT
CCCGTCATCACACTTTAGAAGTCCATCTGAAAGTAATCAATTGATTGTAT
TGTTATTTCAGGATGCAGCAACAGCAACAGCCGTTTAGCAAAAAACCTTT
ATCTCGATGTTCCATGCAAAAAGCACGCCAAATTCTAGCACTTGAGAGTA
TCAAGAATAAACAAGACCATCGTCAAGGAGATATCAAAATAAACAAAGAT
GGCAGAATGAAACCACCAAGAAGAGTCTCTTTTAGCATCTGATGTTCTTA
TTATTTGTATTAATTGGGAATTCTTAAATTCTTGAAAATAACAATTCGAA
CCCAGAA

Coding sequence (CDS) from alignment at scaffold_167:1862002..1865408-

>TCONS_00050132 ID=TCONS_00050132|Name=TCONS_00050132|organism=Clytia hemisphaerica|type=CDS|length=3996bp|location=Sequence derived from alignment at scaffold_167:1862002..1865408- (Clytia hemisphaerica)
GATGCAGCAACAGCAACAGCCGTTTAGCAAAAAACCTTTATCTCGATGTT
CCATGCAAAAAGCACGCCAAATTCTAGCACTTGAGAGTATCAAGAATAAA
CAAGACCATCGTCAAGGAGATATCAAAATAAACAAAGATGGCAGAATGAA
ACCACCAAGAAGAGTCTCTTTTAGCATCTGAGAGAGAAAAGGAGCAGCAA
GACCTCCGAAGACAAGCCTTGTTTGCAATGTTTGAGTCCGTACCAAGCTC
GACAGATGCTTCACCGCCATACGTTCCCTCTTAAAAGCACATCGATGAGA
CCCCGAACACGGCACAAACCAGTTGTCATTACTCAGCAACCCGTCACTTC
ACCTTTATCAAAATATTTCACACAAAAACAACGGAAAGAACCTGTGAAAG
GATTTTCACGCGCACATGAAAACGAAGCTTACAAGCGTGCACAGGCTAAA
TACATGGCTAGTGAGCGGGAAGAATATATTCCACCGACGAATATAATCTC
AACTCCTGACTCTTTTTTAAGTGACGAAGAAACAGAAGGGTCGAGTAACA
GAAGATTTCTGATCGAATCCGATCAAATTCGGGTTACAATATCGGGGAAT
AAACTGGCGAAAGGAACATTCAAAATCACACATGAATCGAGTGGAAGATC
TACACTTCAAAAACAAAGCCAAGTCCGACTTCGATCTCGAGTCTCAATTC
TTATACAATGACCCACATCCAGTAAACTCATGTCTGAAAGTCAGTAAAAA
ATCATGTGGTACTTTCAAAGATAAACAATTTAAAACTTCACCTTGTTCAA
CTCGGAGCCCATCCCCTGATGAGGAATTAAGACAGACACCATTTCGACTG
GATAGTGGTAAAACCTCTTTTACCGGACAACAAAACTCAAGAACTAAAGA
GAAGTCTTATAGTACAAAGAAGTCGACTAAAAGAGGATCAAAGACGGTCA
AAAGTACTTTAGAAGGTGCTTTCGATTTGAACAAATCAGAGAATTCGAGG
ATGCAGCAACAGCAACAGCCGTTTAGCAAAAAACCTTTATCTCGATGTTC
CATGCAAAAAGCACGCCAAATTCTAGCACTTGAGAGTATCAAGAATAAAC
AAGACCATCGTCAAGGAGATATCAAAATAAACAAAGATGGCAGAATGAAA
CCACCAAGAAGAGTCTCTTTTAGCATCTGAGAGAGAAAAGGAGCAGCAAG
ACCTCCGAAGACAAGCCTTGTTTGCAATGTTTGAGTCCGTACCAAGCTCG
ACAGATGCTTCACCGCCATACGTTCCCTCTTAAAAGCACATCGATGAGAC
CCCGAACACGGCACAAACCAGTTGTCATTACTCAGCAACCCGTCACTTCA
CCTTTATCAAAATATTTCACACAAAAACAACGGAAAGAACCTGTGAAAGG
ATTTTCACGCGCACATGAAAACGAAGCTTACAAGCGTGCACAGGCTAAAT
ACATGGCTAGTGAGCGGGAAGAATATATTCCACCGACGAATATAATCTCA
ACTCCTGACTCTTTTTTAAGTGACGAAGAAACAGAAGGGTCGAGTAACAG
AAGATTTCTGATCGAATCCGATCAAATTCGGGTTACAATATCGGGGAATA
AACTGGCGAAAGGAACATTCAAAATCACACATGAATCGAGTGGAAGATCT
ACACTTCAAAAACAAAGCCAAGTCCGACTTCGATCTCGAGTCTCAATTCT
TATACAATGACCCACATCCAGTAAACTCATGTCTGAAAGTCAGTAAAAAA
TCATGTGGTACTTTCAAAGATAAACAATTTAAAACTTCACCTTGTTCAAC
TCGGAGCCCATCCCCTGATGAGGAATTAAGACAGACACCATTTCGACTGG
ATAGTGGTAAAACCTCTTTTACCGGACAACAAAACTCAAGAACTAAAGAG
AAGTCTTATAGTACAAAGAAGTCGACTAAAAGAGGATCAAAGACGGTCAA
AAGTACTTTAGAAGGTGCTTTCGATTTGAACAAATCAGAGAATTCGAGGA
TGCAGCAACAGCAACAGCCGTTTAGCAAAAAACCTTTATCTCGATGTTCC
ATGCAAAAAGCACGCCAAATTCTAGCACTTGAGAGTATCAAGAATAAACA
AGACCATCGTCAAGGAGATATCAAAATAAACAAAGATGGCAGAATGAAAC
CACCAAGAAGAGTCTCTTTTAGCATCTGAGAGAGAAAAGGAGCAGCAAGA
CCTCCGAAGACAAGCCTTGTTTGCAATGTTTGAGTCCGTACCAAGCTCGA
CAGATGCTTCACCGCCATACGTTCCCTCTTAAAAGCACATCGATGAGACC
CCGAACACGGCACAAACCAGTTGTCATTACTCAGCAACCCGTCACTTCAC
CTTTATCAAAATATTTCACACAAAAACAACGGAAAGAACCTGTGAAAGGA
TTTTCACGCGCACATGAAAACGAAGCTTACAAGCGTGCACAGGCTAAATA
CATGGCTAGTGAGCGGGAAGAATATATTCCACCGACGAATATAATCTCAA
CTCCTGACTCTTTTTTAAGTGACGAAGAAACAGAAGGGTCGAGTAACAGA
AGATTTCTGATCGAATCCGATCAAATTCGGGTTACAATATCGGGGAATAA
ACTGGCGAAAGGAACATTCAAAATCACACATGAATCGAGTGGAAGATCTA
CACTTCAAAAACAAAGCCAAGTCCGACTTCGATCTCGAGTCTCAATTCTT
ATACAATGACCCACATCCAGTAAACTCATGTCTGAAAGTCAGTAAAAAAT
CATGTGGTACTTTCAAAGATAAACAATTTAAAACTTCACCTTGTTCAACT
CGGAGCCCATCCCCTGATGAGGAATTAAGACAGACACCATTTCGACTGGA
TAGTGGTAAAACCTCTTTTACCGGACAACAAAACTCAAGAACTAAAGAGA
AGTCTTATAGTACAAAGAAGTCGACTAAAAGAGGATCAAAGACGGTCAAA
AGTACTTTAGAAGGTGCTTTCGATTTGAACAAATCAGAGAATTCGAGGAT
GCAGCAACAGCAACAGCCGTTTAGCAAAAAACCTTTATCTCGATGTTCCA
TGCAAAAAGCACGCCAAATTCTAGCACTTGAGAGTATCAAGAATAAACAA
GACCATCGTCAAGGAGATATCAAAATAAACAAAGATGGCAGAATGAAACC
ACCAAGAAGAGTCTCTTTTAGCATCTGAGAGAGAAAAGGAGCAGCAAGAC
CTCCGAAGACAAGCCTTGTTTGCAATGTTTGAGTCCGTACCAAGCTCGAC
AGATGCTTCACCGCCATACGTTCCCTCTTAAAAGCACATCGATGAGACCC
CGAACACGGCACAAACCAGTTGTCATTACTCAGCAACCCGTCACTTCACC
TTTATCAAAATATTTCACACAAAAACAACGGAAAGAACCTGTGAAAGGAT
TTTCACGCGCACATGAAAACGAAGCTTACAAGCGTGCACAGGCTAAATAC
ATGGCTAGTGAGCGGGAAGAATATATTCCACCGACGAATATAATCTCAAC
TCCTGACTCTTTTTTAAGTGACGAAGAAACAGAAGGGTCGAGTAACAGAA
GATTTCTGATCGAATCCGATCAAATTCGGGTTACAATATCGGGGAATAAA
CTGGCGAAAGGAACATTCAAAATCACACATGAATCGAGTGGAAGATCTAC
ACTTCAAAAACAAAGCCAAGTCCGACTTCGATCTCGAGTCTCAATTCTTA
TACAATGACCCACATCCAGTAAACTCATGTCTGAAAGTCAGTAAAAAATC
ATGTGGTACTTTCAAAGATAAACAATTTAAAACTTCACCTTGTTCAACTC
GGAGCCCATCCCCTGATGAGGAATTAAGACAGACACCATTTCGACTGGAT
AGTGGTAAAACCTCTTTTACCGGACAACAAAACTCAAGAACTAAAGAGAA
GTCTTATAGTACAAAGAAGTCGACTAAAAGAGGATCAAAGACGGTCAAAA
GTACTTTAGAAGGTGCTTTCGATTTGAACAAATCAGAGAATTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031737XLOC_031737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050132-exon-scaffold_167-1575043694:1865082..1865408TCONS_00050132-exon-scaffold_167-1575043694:1865082..1865408Clytia hemisphaericaexon
TCONS_00050132-exon-scaffold_167-1575043694:1863968..1864119TCONS_00050132-exon-scaffold_167-1575043694:1863968..1864119Clytia hemisphaericaexon
TCONS_00050132-exon-scaffold_167-1575043694:1862871..1863210TCONS_00050132-exon-scaffold_167-1575043694:1862871..1863210Clytia hemisphaericaexon
TCONS_00050132-exon-scaffold_167-1575043694:1862002..1862247TCONS_00050132-exon-scaffold_167-1575043694:1862002..1862247Clytia hemisphaericaexon
TCONS_00050132-exon-scaffold_167-1510915933:1865082..1865408TCONS_00050132-exon-scaffold_167-1510915933:1865082..1865408Clytia hemisphaericaexon
TCONS_00050132-exon-scaffold_167-1510915933:1863968..1864119TCONS_00050132-exon-scaffold_167-1510915933:1863968..1864119Clytia hemisphaericaexon
TCONS_00050132-exon-scaffold_167-1510915933:1862871..1863210TCONS_00050132-exon-scaffold_167-1510915933:1862871..1863210Clytia hemisphaericaexon
TCONS_00050132-exon-scaffold_167-1510915933:1862002..1862247TCONS_00050132-exon-scaffold_167-1510915933:1862002..1862247Clytia hemisphaericaexon
TCONS_00050132-exon-scaffold_167-1491911889:1865082..1865408TCONS_00050132-exon-scaffold_167-1491911889:1865082..1865408Clytia hemisphaericaexon
TCONS_00050132-exon-scaffold_167-1491911889:1863968..1864119TCONS_00050132-exon-scaffold_167-1491911889:1863968..1864119Clytia hemisphaericaexon
TCONS_00050132-exon-scaffold_167-1491911889:1862871..1863210TCONS_00050132-exon-scaffold_167-1491911889:1862871..1863210Clytia hemisphaericaexon
TCONS_00050132-exon-scaffold_167-1491911889:1862002..1862247TCONS_00050132-exon-scaffold_167-1491911889:1862002..1862247Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050132-proteinTCONS_00050132-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1862002..1865408 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.870365	0.44458	0.703909	0.826398	0.111784	0	0.106571	0	0	0.173045	0.167961	0.0828083	0.0551288	0.0858777	0	0	0.0311133	0.0318902	0.044058	0.0461035	0.200362	0.117275	0.475211	0.388832	0.578483	1.46942	0	0.242605	0.0460018	0.32808
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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